mRNA_H-paniculata_contig48.11880.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig48.11880.1 vs. uniprot
Match: D8LEG9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEG9_ECTSI) HSP 1 Score: 1075 bits (2781), Expect = 0.000e+0 Identity = 1028/2533 (40.58%), Postives = 1310/2533 (51.72%), Query Frame = 3
Query: 1494 LAVAETLQEVPGG-VSASFLIDHFIGTALRQSQRVEALEGEVCNMRARCARLARVARGESVEPANVVAPHSDTIEVRTEKGEGQHQSKG----------DE-WIEAAVQDAAVAMESGRRRALEEEIESLRNQLLTQRGRTDALQREVEDERQRRSFIGVHRSMDRPED--------------EMSVLRRELSRATSEIEALRVHAADLRSHIHSENWSSHMYKGGNSGDTNDRS------RGDADTDVTGGYSNVRPGDRTAATSAALKESGIA-----YVVGGSSPCSECSQLTSLLAERNAQVDVLTTTVEALQVSSTSTLS----SPRKHEDIPSGSNGDRGRGRSESPRRRAVRAGKRAPAS-ASLATLDERMTDVDG--------GVGILNQISAQGLVRHCVALATRLSATMARAWASERRADRSVVELDRKEREVSATQTKFTELAERCRSLDAERCKATSALKRMHAESAVRLREAGEEASKLRSALRDAELGANDAQQTLQSVRDEELALEAELHKARERHRDDINRLSEGQVTRLKEIANRLCVYNAT-SQP----FGRLAASEGEFEASASASAVTPMASTIARIAEQWQAYVAK------------------------------PKPPSSXXXXXXXXXXXXXXXXXXXXXXXERQGVAAA-FLQETATQLDNECARAVRRARAFEWELRSVHQDMLDQADVLEELRLERTRLCARVTAAEAALVAASHITTRSLPAGNVSTAGVDN----------SFCFAVSSGSDAAFAGGKSASDSIADSRQSGRGDGPGNATVAAFSLLEKRLAAALEDLVTAEAARSAVEASEVAATARAEACEAEATGIRATVDVLNVELDRYKLTA-IDKLRTEALEWRREIRAEIGRWWQDDLASHQRNMHLHNGIALDWGSSGATDEATVAVTS----------------------TSAESSTAFPSLRENRPYFRSDPVNFGVSGKEAMAQALIAGRVEQAILEERLMAQEQSLTRVRSETLHLRSTLERWHGEFVSPAME----ARRHRP----MTSAAVHKPP----------IISMRERLDKSSLAATAELIGAREKIAGLRTEVTTLRALVARVREDERQARETADRRVKSARETVQRRAEGDLCDAAERLAEERERFKLQLGAAHADVLRLGAESAELERRNQQLELER-----SAGRVRSWLD-----------------DSNNSTRRSRSRGSPPGDHLAASGNALRWRNEEEPREQRERVFAE-GGEEGALTREKTLREAAEEEREALRRMANGLAIELRTVTEAKAEAEDERQTLVQEAAKAKAEAQTASLAREVQEGALKELGRLLEFAKE--GTTMSGVPAESRHGGDGQLRSTGASLGWDRSKEEASRFARVMVAAKVAEAGLLRRLQDASASEAELRHMLRRRDRRIEELKSEQVKTDRLARSRGGESTTPWPP--------LTGRPSVNNLENALGPGGELAAGKKTEPGVGQGKYAAA-RAETEISQAATVMRLKLDLAEAAARGDVGDAATSTASRLALRLL----STSGGAT--------CDLCGGSVMPRERRNLQTSTYLSESQQGRGASFLMPSAEIERKAARAEDSRKMD-----KPKVPVA-------------GAATASHAATAHDSDEMGEKPGVQPFSNQHHQ--APTGTAARKPLQKRPPVLSRGVRSLEAKLARLERDLGGDGD--LTTSRDNAGSAVVGDSHRSRSPSSAFRASRPPRKAWVKAVRELRVQMSELHDRAESSEEPLNEDCAMRQELEEEVLRLRVELLRQQRNYWQATAELKDRYERVFAGGGGTSERLRPTATENRVTSEDFRSRMEGREKKNDGGKDMDDVGVQAQCSVSNRSTTPINEIQRRNTQGEDQSSIPGARGSSQQEVGIHSLRESLRNAEELLTEKEQELQDLRRVFLQEAEEARREIARSIGAQKARVTALEEKVRLVREKVKTMARPKQNRFQKVKGRVGVNRGGGDDVSASLS-TSAIPLSVDELLNMLAAADEEAFEAKGRAQRAEYDLRALSAEADALRRSAEGCRRAPNVADSHAPQEDCDTHACPSAAGDSSGNPPARVVVGVSEFVSVTCAARLVSAEVEVERLRDECLAASAVALEARREVSALRLATSRANAAHMWDGRAREKKLQKQVSTLKREKNRLRDAADGVLFPGPGGGKSSRSRAEE-------------EAAEAAMDKSRAQLAAAREDSERRSRTITALRAAKLSLEKQLEKSQKKLDDAEAKLNRALKDNGVKGNALQALRGKMSVLEAETKAAKQTVKPVADAPASAAECIVANGPGAGAAGAVAKTFTGDG-AGGHRKEPETN--SSQETTMRELRAERDRLQANMRARQGLLSKRAAELDARMAELQRMEEQACSLRAAVARKDDAYRTTKKQLLSIRQEYELLKASSQRWQADADIKWRNLKQASESAAREVMASRQTGDAATRELVALKSAFRSFLKTLWDDLLSRPLALAAEASTRD 8426
+AV +TL V GG VSA LID F GT RQS+RV+ +E +V MR RCARLAR+ARG++ + + P G G+ + G DE W+ A VQ+AA AME+GRRR LE+E+ESLRN++L +R R DA Q E DER+ RS D + + + LRR+L A EIEALR H DLRS + S W S +G ND S RG + G + AA AAL+E S+ E +LTSLL+E++AQ+ VLT+TVEALQ S SPRK G N D + SPR R R R P S SL DV G GVG+LN + AQGL R CV+LA RL++ +AR +ERRA+R E R++R++ K +AL + AESA RLREAGEEAS+LR ALRDAELGA+DA Q L S R E AL EL + R++HR+++ RLSE R+KE A+RL + A+ QP G G A++ A +P+A+ IA +A W+A+V+ XXXXXXXXXXXXXXXX ERQ A A FLQETA +LD EC+RAVRRARA EWEL + LD LEE R E RL AR AEA++ + D F GG + ++ S ++GR TVAA SLLEKR AAA+EDLV A AAR+A A E A D+L +L+R+K++A +++ A EWRREIRAE+GRWW+DDL + LH G+ LDWGS+GA D A VA+T TS +A P + + + GVSG+EAMAQALIAGR EQA LE+RL E+ + ++R ETL LR+TLERWH EFV+PA++ RR P AA+ P ++ + L++ L ATA L+G RE+ LR EV +LRALVAR+REDE ARETA RRV+SARE +RRA+GDL DAAERL EERERFK QLGAAHA++LRLGAE+AE ERR L+ ER SA R+ S + D RR+ + + + P E R GGEE + RE LR E EREALRRM NGLA++L+ EA++EA+DER+ LVQEAA+AKAEA+ A LARE E ALKELGRLLEFA+E G T P R+ D L + G S GWDRSK EA RFARVMVAAKVA+A LLRRLQ A+++EAELRH++RRRD RIEELK + +DRL RS G S L S ++ N G A T Q K A+ R E++ A + L+L+LAEA+ARG+VGDA T A R ALRL S+ GG C CG R RR + L++S GRGA FL+PSA+IERKAA A S +D +P+ P A GA S A +A + + ++ +P+ AA LS GV+SLEA LARLE + G+G + S D A + S + A AW +AVR LR Q+ +L RAE +EE L E+ A + L+EEVLRLR ELLRQQR++WQATA+LK+RYER ED + EG E+ E L + +EL+++RR+ + E+AR + A +ARV LEEK+R K+K MARPK K +GR V+ GGGD + +S++PLS DELLN+LAAADEE FEA+ R QR E++LR +AEADAL R G +A + P E GD G + SV CAARL +AE EV LR+E LAA + + A+RE +AL+LA R A + R+REK+L++QVS KRE RLR A P GK R +A AA+ QL RE+SERR RTI ALRAAK +L + L + +++ E KL RA +D GVKGN ++ALR K++ LEAE A K + + A+ + A G A T G A G +P Q T+R+LRAERDRL+A+MR G LSK+ AE+DA++AELQR+E +A +LRAAVARKDDAYR TKKQLLS+R+EYE K SS RW+ DA+ KWR L++ASE+A R S ++GDAA EL ALKSAFRSFLKTLWDDL SRP A D
Sbjct: 1 MAVEKTLDGVAGGTVSALALIDRFAGTLYRQSRRVKDMEDQVWTMRNRCARLARLARGDTADGGS---PSGAAAAPAVVSGAGRSGTPGRLRSEERREEDECWVAAGVQEAAAAMEAGRRRDLEQEVESLRNEVLAERRRADAAQLEARDERRLRSLAAPAGGGDGSSNSSIQGYTINCATKGDEAALRRKLELAAGEIEALRTHTRDLRSQVQS-GWWSWRPSSSEAGADNDGSEPSSGGRGRVKGEELGLLDGLVSSGACAAAEAALREIDATGXXXXXXXXXSNVSIEVDRLTSLLSEKDAQIGVLTSTVEALQTSPAFAPPPLPPSPRKGGVAAPGVNVDGAAVGASSPRLRTDRETARTPTSRGSLKLSSFWAADVSGCGVDDGGEGVGVLNHVGAQGLARRCVSLAVRLTSALAREGRAERRAERLAAEAGRRDRKIRXXXXXXXXXXXXXXXXXXXXXKTAAALGSLRAESAARLREAGEEASQLRRALRDAELGADDACQRLASSRAECHALAVELRENRQQHREEVLRLSEAHDARIKECADRLSLDGASLPQPPLCGHGTRGRRRGATATVAASVASSPVAAAIAELAAHWRAFVSNGMGDDYENDGNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKGTVLSERQLTATATFLQETAVRLDTECSRAVRRARALEWELAGARRGQLDATTALEEAREEVCRLSARAAVAEASVXXXXXXXXXXXXXXXXKPSYADQLAESXXXXXXXXXXXXXXXXXIRFGGGDAGEEA---STRTGRWS---YYTVAAVSLLEKRFAAAVEDLVAAGAARAAAVAGEXXXXXXXXXXXXXXXEPLARADLLAADLERHKVSATMEQDGAAAAEWRREIRAELGRWWKDDL------LALHGGVVLDWGSAGAADAAAVALTRKNKKMPADGIGXXXXXXXXXXFTSGSRYSANPDVEGRHATASIERIEHGVSGEEAMAQALIAGREEQAHLEDRLQLSERRVGKLRGETLRLRATLERWHTEFVAPALQEAQKCRRSLPPPGDARGAALAAPQRGSTAAATVAVVDGKSVLERKLLEATAGLLGVREEATDLRREVASLRALVARLREDENDARETAGRRVESAREASRRRADGDLKDAAERLEEERERFKAQLGAAHAEILRLGAEAAESERRRN-LDKERRNRQASAARLSSTGEHGGVGDNGPSGEGSITVDDGGVGRRTAXXXXXXXXXILEERTGVPTGGRKRPAEGTGRXXXXAGGEE--IEREWALRREVEGEREALRRMCNGLAVDLKGAVEARSEAKDEREALVQEAARAKAEAKLAGLARENLEVALKELGRLLEFARETAGATRD-APVGLRNDEDRPLHAAGLS-GWDRSKVEAQRFARVMVAAKVAQADLLRRLQGAASAEAELRHLIRRRDIRIEELKHDLAASDRLGRSTSGGSXXXXXXXXXXXXXSLRESGSTSSPGNVSGAAAAAVAAGDTSTRGSQAKAVASERVAKEVALTAALKHLELELAEASARGEVGDAVTRAAERFALRLFPEAESSGGGGRGAWSSKGYCTACG-LTPERARRPV---VNLTDS--GRGALFLVPSADIERKAALAASSAALDAAAEAQPETPAAXXXXXXXXXXXDAGAVETSPARSAARTTXXXXXXXXXXXGERRNRVSSPSTAAALG--------LSSGVQSLEANLARLEAVVAGNGPAGVAESTDGAPDGLGWIRSGSAYGGTVVEA------AWAEAVRGLRAQVLDLGHRAEVTEELLEEERAAKGNLDEEVLRLRTELLRQQRSHWQATAKLKERYERAL--------------------HED--NEQEGNEEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERLRV-RARELREVRRLHARXXXXXAAELARVVEAHRARVAILEEKLRRTTRKIKAMARPKPKTAAK-RGRESVSGGGGDAGGYQCAFSSSVPLSTDELLNLLAAADEEVFEARSRTQRLEFELRTKTAEADALLREDGGV-----IAANPVPTERVGVE------GDGDGQSTGEA----TGLASVACAARLAAAEAEVATLREEGLAARELVVGAQRESAALKLAAHRKTADRADESRSREKELRRQVSAYKREAERLRSTATASSALAPTAGKKGGPRXXXXXXXXXXXXXXXXDAEAAALKLRTQQLGVIREESERRGRTIVALRAAKAALGEDLRRLRQEAAGQEEKLARAFRDAGVKGNTVKALREKVTALEAEIVALK-SARTNANTTTLGGRVLSAEARGGSLPDTDAVTADSPGEAVGAALQPSVPLCDVQTATVRDLRAERDRLRASMRGWHGSLSKKTAEIDAQVAELQRLEAEAGTLRAAVARKDDAYRATKKQLLSVREEYEQFKDSSHRWREDAEAKWRGLRRASEAAVRRAKDSEKSGDAAELELAALKSAFRSFLKTLWDDLRSRPPLAPPAAGAAD 2452
BLAST of mRNA_H-paniculata_contig48.11880.1 vs. uniprot
Match: D8LEH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEH0_ECTSI) HSP 1 Score: 69.7 bits (169), Expect = 6.140e-8 Identity = 51/120 (42.50%), Postives = 74/120 (61.67%), Query Frame = 3
Query: 1092 RLRRLLHDQALEVVGLRQRLLQVEM--RLAANAREGEER-ATLTRRRIASLE------YAVRTSKMAETKRMADLEAQVTMLRAQGDKHEALVAAREEITAGKLAIMRAEGDANLHSQLL 1424
RL RLL +Q LEVV LRQR+L+ E+ R + R EER A + L+ + +T K+ E+ +A++E +V L A+GD EAL+ ARE ++A KLA++R EG+ LH+QLL
Sbjct: 307 RLHRLLEEQGLEVVALRQRVLKAEIVARTRDSGRHDEERWAKEEAKERGGLKGVGVEGSSTKTQKLVESAVLAEMEGRVADLHARGDTREALMVARETVSALKLALIRTEGEVELHAQLL 426 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig48.11880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig48.11880.1 >prot_H-paniculata_contig48.11880.1 ID=prot_H-paniculata_contig48.11880.1|Name=mRNA_H-paniculata_contig48.11880.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=2840bp MQMAQLKVALSTQAAELAQKGAALDEILKARQQETEEAREREVALRAKVEback to top mRNA from alignment at H-paniculata_contig48:31997..45918+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig48.11880.1 ID=mRNA_H-paniculata_contig48.11880.1|Name=mRNA_H-paniculata_contig48.11880.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=13922bp|location=Sequence derived from alignment at H-paniculata_contig48:31997..45918+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig48:31997..45918+ >mRNA_H-paniculata_contig48.11880.1 ID=mRNA_H-paniculata_contig48.11880.1|Name=mRNA_H-paniculata_contig48.11880.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=17040bp|location=Sequence derived from alignment at H-paniculata_contig48:31997..45918+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |