mRNA_H-paniculata_contig4791.11865.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4791.11865.1
Unique NamemRNA_H-paniculata_contig4791.11865.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4791.11865.1 vs. uniprot
Match: CALM_GLOSP (Calmodulin n=40 Tax=Eukaryota TaxID=2759 RepID=CALM_GLOSP)

HSP 1 Score: 259 bits (662), Expect = 1.120e-76
Identity = 143/149 (95.97%), Postives = 143/149 (95.97%), Query Frame = 2 
Query:  278 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEILEXXXXXXXXXXXFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMSK 724
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAEL DMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEILE     XXXXXXFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMSK
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEILEAFKVFXXXXXXFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMSK 149
[Close]
BLAST of mRNA_H-paniculata_contig4791.11865.1 vs. uniprot
Match: CALM_SACJA (Calmodulin n=28 Tax=Eukaryota TaxID=2759 RepID=CALM_SACJA)

HSP 1 Score: 259 bits (661), Expect = 1.540e-76
Identity = 148/149 (99.33%), Postives = 148/149 (99.33%), Query Frame = 2 
Query:  278 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEILEXXXXXXXXXXXFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMSK 724
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIL XXXXXXXXXXXFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMSK
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEILXXXXXXXXXXXXFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMSK 149
[Close]
BLAST of mRNA_H-paniculata_contig4791.11865.1 vs. uniprot
Match: L1JMV2_GUITC (Calmodulin n=10 Tax=Eukaryota TaxID=2759 RepID=L1JMV2_GUITC)

HSP 1 Score: 256 bits (655), Expect = 1.030e-75
Identity = 140/149 (93.96%), Postives = 143/149 (95.97%), Query Frame = 2 
Query:  278 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEILEXXXXXXXXXXXFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMSK 724
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAEL DMINEVDADGNGTIDFPEFLT+MARKMKDTDSEEEILE     XXXXXXFISAAELRH+MTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMM+K
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEILEAFKVFXXXXXXFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMAK 149
[Close]
BLAST of mRNA_H-paniculata_contig4791.11865.1 vs. uniprot
Match: A0A7S3PSQ8_9STRA (Calmodulin n=3 Tax=Eukaryota TaxID=2759 RepID=A0A7S3PSQ8_9STRA)

HSP 1 Score: 253 bits (647), Expect = 1.310e-74
Identity = 132/149 (88.59%), Postives = 136/149 (91.28%), Query Frame = 2 
Query:  278 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEILEXXXXXXXXXXXFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMSK 724
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAEL DMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEI+E           FISAAELRH+MTNLGEKLTD+E DEMIREADIDGDGQINYEEFVKMM+SK
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELNDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIIEAFKVFDKDGNGFISAAELRHVMTNLGEKLTDDECDEMIREADIDGDGQINYEEFVKMMLSK 149
[Close]
BLAST of mRNA_H-paniculata_contig4791.11865.1 vs. uniprot
Match: A0A4V1IYQ4_9FUNG (Calmodulin n=2 Tax=Zoopagomycota TaxID=1913638 RepID=A0A4V1IYQ4_9FUNG)

HSP 1 Score: 251 bits (640), Expect = 1.200e-73
Identity = 130/149 (87.25%), Postives = 135/149 (90.60%), Query Frame = 2 
Query:  278 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEILEXXXXXXXXXXXFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMSK 724
            MADQLTEEQIAEFKEAFSLFDKDGDGTIT KELGTVMRSLGQNPTEAEL DM+NEVDADGNGTIDFPEFLTMMARKMK+TDSEEEI E           FISAAELRH+MTNLGEKLTDEEVDEMIREAD+DGDGQINY+EFVKMMMSK
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITAKELGTVMRSLGQNPTEAELQDMVNEVDADGNGTIDFPEFLTMMARKMKNTDSEEEIREAFKVFDKDSNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYDEFVKMMMSK 149
[Close]
BLAST of mRNA_H-paniculata_contig4791.11865.1 vs. uniprot
Match: F0W7H9_9STRA (Calmodulin n=5 Tax=Albugo TaxID=65356 RepID=F0W7H9_9STRA)

HSP 1 Score: 249 bits (637), Expect = 3.100e-73
Identity = 131/149 (87.92%), Postives = 135/149 (90.60%), Query Frame = 2 
Query:  278 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEILEXXXXXXXXXXXFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMSK 724
            MA+QL+EEQI EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAEL DMINEVDADGNGTIDFPEFLTMM+RKMKDTDSEEEILE           FISAAELRHIMTNLGEKLTDEEVDEMIREAD+DGDGQI YEEFVKMMMSK
Sbjct:    1 MAEQLSEEQICEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMSRKMKDTDSEEEILEAFKVFDKDLNGFISAAELRHIMTNLGEKLTDEEVDEMIREADVDGDGQICYEEFVKMMMSK 149
[Close]
BLAST of mRNA_H-paniculata_contig4791.11865.1 vs. uniprot
Match: CALM_ACHKL (Calmodulin n=4 Tax=Eukaryota TaxID=2759 RepID=CALM_ACHKL)

HSP 1 Score: 249 bits (635), Expect = 5.830e-73
Identity = 142/149 (95.30%), Postives = 144/149 (96.64%), Query Frame = 2 
Query:  278 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEILEXXXXXXXXXXXFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMSK 724
            MADQLTEEQIAEFKEA SLFDKDGDGTITTKELGTVMRS+GQNPTEAEL DMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEILE XXXXXXXXXX  SAAELRH+MTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMSK
Sbjct:    1 MADQLTEEQIAEFKEAGSLFDKDGDGTITTKELGTVMRSVGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEILEAXXXXXXXXXXXXSAAELRHMMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMSK 149
[Close]
BLAST of mRNA_H-paniculata_contig4791.11865.1 vs. uniprot
Match: I2FMU6_USTH4 (Calmodulin n=3 Tax=Ustilaginomycotina TaxID=452284 RepID=I2FMU6_USTH4)

HSP 1 Score: 248 bits (634), Expect = 7.990e-73
Identity = 135/149 (90.60%), Postives = 144/149 (96.64%), Query Frame = 2 
Query:  278 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEILEXXXXXXXXXXXFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMSK 724
            MADQLTE+QIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAEL+DM+NEVDADGNGTIDFPEFLTMMARKMKDTDSEEEI E   XXXXXXXXFIS+AELRH+MTNLGEKL+D EVDEMIREAD+DGDGQINY+EFVKMM+SK
Sbjct:    1 MADQLTEDQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELSDMVNEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIKEAFKXXXXXXXXFISSAELRHVMTNLGEKLSDNEVDEMIREADVDGDGQINYDEFVKMMLSK 149
[Close]
BLAST of mRNA_H-paniculata_contig4791.11865.1 vs. uniprot
Match: A0A183G9L2_HELPZ (Calmodulin n=1 Tax=Heligmosomoides polygyrus TaxID=6339 RepID=A0A183G9L2_HELPZ)

HSP 1 Score: 246 bits (629), Expect = 3.880e-72
Identity = 129/149 (86.58%), Postives = 133/149 (89.26%), Query Frame = 2 
Query:  278 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEILEXXXXXXXXXXXFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMSK 724
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAEL DMINEVDADGNGTIDFPEFLTMMARKM+DTDSEEEI E           FISAAELRH+MTNLGEKL DEEVDEMIREADIDGDGQ+NYEEFV MM +K
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMEDTDSEEEIREAFRVFDKGGNGFISAAELRHVMTNLGEKLPDEEVDEMIREADIDGDGQVNYEEFVTMMTTK 149
[Close]
BLAST of mRNA_H-paniculata_contig4791.11865.1 vs. uniprot
Match: CALM_WHEAT (Calmodulin n=27 Tax=Mesangiospermae TaxID=1437183 RepID=CALM_WHEAT)

HSP 1 Score: 246 bits (628), Expect = 5.320e-72
Identity = 127/149 (85.23%), Postives = 134/149 (89.93%), Query Frame = 2 
Query:  278 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEILEXXXXXXXXXXXFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMSK 724
            MADQLT+EQIAEFKEAFSLFDKDGDG ITTKELGTVMRSLGQNPTEAEL DMINEVDADGNGTIDFPEFL +MARKMKDTDSEEE+ E           FISAAELRH+MTNLGEKLTDEEVDEMIREAD+DGDGQINYEEFVK+MM+K
Sbjct:    1 MADQLTDEQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQDGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4791.11865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
CALM_GLOSP1.120e-7695.97Calmodulin n=40 Tax=Eukaryota TaxID=2759 RepID=CAL... [more]
CALM_SACJA1.540e-7699.33Calmodulin n=28 Tax=Eukaryota TaxID=2759 RepID=CAL... [more]
L1JMV2_GUITC1.030e-7593.96Calmodulin n=10 Tax=Eukaryota TaxID=2759 RepID=L1J... [more]
A0A7S3PSQ8_9STRA1.310e-7488.59Calmodulin n=3 Tax=Eukaryota TaxID=2759 RepID=A0A7... [more]
A0A4V1IYQ4_9FUNG1.200e-7387.25Calmodulin n=2 Tax=Zoopagomycota TaxID=1913638 Rep... [more]
F0W7H9_9STRA3.100e-7387.92Calmodulin n=5 Tax=Albugo TaxID=65356 RepID=F0W7H9... [more]
CALM_ACHKL5.830e-7395.30Calmodulin n=4 Tax=Eukaryota TaxID=2759 RepID=CALM... [more]
I2FMU6_USTH47.990e-7390.60Calmodulin n=3 Tax=Ustilaginomycotina TaxID=452284... [more]
A0A183G9L2_HELPZ3.880e-7286.58Calmodulin n=1 Tax=Heligmosomoides polygyrus TaxID... [more]
CALM_WHEAT5.320e-7285.23Calmodulin n=27 Tax=Mesangiospermae TaxID=1437183 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4791contigH-paniculata_contig4791:3617..10950 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score261.2
Seed ortholog evalue3.1e-67
Seed eggNOG ortholog2880.D7G3B7
KEGG koko:K02183
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0027@2759
Ec32 ortholog descriptionCalmodulin
Ec32 orthologEc-06_002270.1
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Exons2
Model size3709
Cds size450
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4791.11865.1prot_H-paniculata_contig4791.11865.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4791 6599..10673 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930420.5334032-UTR-H-paniculata_contig4791:3616..65981622930420.5334032-UTR-H-paniculata_contig4791:3616..6598Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4791 3617..6598 -
1691481284.1762333-UTR-H-paniculata_contig4791:3616..65981691481284.1762333-UTR-H-paniculata_contig4791:3616..6598Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4791 3617..6598 -
1622930420.621266-UTR-H-paniculata_contig4791:10673..109501622930420.621266-UTR-H-paniculata_contig4791:10673..10950Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4791 10674..10950 -
1691481284.20945-UTR-H-paniculata_contig4791:10673..109501691481284.20945-UTR-H-paniculata_contig4791:10673..10950Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4791 10674..10950 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930420.5509467-CDS-H-paniculata_contig4791:6598..67991622930420.5509467-CDS-H-paniculata_contig4791:6598..6799Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4791 6599..6799 -
1691481284.1894987-CDS-H-paniculata_contig4791:6598..67991691481284.1894987-CDS-H-paniculata_contig4791:6598..6799Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4791 6599..6799 -
1622930420.596696-CDS-H-paniculata_contig4791:10424..106731622930420.596696-CDS-H-paniculata_contig4791:10424..10673Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4791 10425..10673 -
1691481284.1986861-CDS-H-paniculata_contig4791:10424..106731691481284.1986861-CDS-H-paniculata_contig4791:10424..10673Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4791 10425..10673 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4791.11865.1

>prot_H-paniculata_contig4791.11865.1 ID=prot_H-paniculata_contig4791.11865.1|Name=mRNA_H-paniculata_contig4791.11865.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=150bp
MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELA
DMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEILEAFKVFDKDGNGF
ISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMSK*
back to top

mRNA from alignment at H-paniculata_contig4791:3617..10950-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4791.11865.1 ID=mRNA_H-paniculata_contig4791.11865.1|Name=mRNA_H-paniculata_contig4791.11865.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7334bp|location=Sequence derived from alignment at H-paniculata_contig4791:3617..10950- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCCCCTCTTCCCGTGTGCCTCAGGTTATTCGCTCCCACAACTTGCCACA
CGTCAGCCTCAGTCTGATATTATACCACACTCCGCCGACGTTCCTTGCCA
GTCCACTTCTGTAGATCCAGAGAGCACGTACCCTAAAACAGGCGAAAGGG
AAGACACCAACCGCAGCAGTAACAACGCGCAGAAGTTAGCAGCGACCTGC
TTTCCTCTCACGCTCCATCGCTGCTGCTAGAACGTAGTGTTTGAGACTAT
CTTTTAAAACCTTTCGTTGATTTCACGATGGCCGATCAACTCACGGAAGA
GCAAATCGCCGAATTCAAGGAGGCCTTCAGTCTGTTCGACAAGGACGGCG
ATGGGACCATCACCACCAAGGAGCTCGGTACCGTGATGCGTTCCTTGGGC
CAGAACCCCACGGAAGCCGAATTGGCCGACATGATCAATGAGGTTGATGC
GGATGGTAACGGGACCATCGACTTTCCCGAGTTCTTGACCATGATGGCGC
GGAAGATGAAGGACACGGATTCTGAGGTGAGCAGGTTTTGCTCCGGCGCC
CGGGATCGCAGCAAAACCCGTCTGTAGCGAGAAGATAAGAGATCTGGTGT
TGTGCTCCGTGTGGATCTATCCTTTTATGGATCTGATCTTGGGCGATTGG
CGATCGATGCCTCCGTACCATAAGATTTGGGATGGTAATAGAGTAGCTTT
GTTTGGATTCGTCAACCACGACAAGCGCTGATAAACCTTAGAGGACGGTC
TTCACAAGATCGAGTCGGCCTTGCTCGTGAATTACTGGAAAATTTATGTT
GAACGGCGATATTGCCAGTTCAGTTGGTACCTTACAGCCTGTCAGTATAG
GCAGAACAGCCAGTACAGAGAGTGCTCTGTGATGTTGATGTCTCTTTTGG
TCGATTTTTCGCCGTTCGATGCCGCCCCAAAAATGGACTATTGTGATCAA
CAGCCCGCGAAAACACAGAAACACAGAAACACGTACCAAGCACAGATCGC
CGCTTGTATACATCTACCCGCTTTGAGCCTGTAGGCCACCGGCCTCACGT
CTGAAGGAAACAGCCAGCGCCGAAAAACGAGGTAAGACTCCGAAGCTGTC
CCACTCCTGCGAAGCTAGGTTTGCCAAGCACGCAAAACTTCGGTCTGATA
GCTCTCCGGCGGGCTCGTGAATCGAAATTTGTTCGAAAGTTACCCGCCGC
AGCTCGGCCGGTGCGCGTGGATTCTTTGAATGCCAAACCCAAAGCGTGAA
ATTTGAAAATATTATTTGCTCGTGGAAGAGAGGGTGGCGATGCCCCCAAC
CCCCGCTTCGCTCTTTCCTTTCTCGTTTACACTGCTGTCCAGTACGGAGA
GTGAGGTCCGTCTTTCCAACGTTTTTGACCTCTCCAGCTGCATGGCTTTA
ATCTGCGCACCACGCAGCAGCAACAGGGATTTAGTCATCGACCTACTGGA
TCTTTTTTTTTACACATTTTTTTGGCATCTAATTGGTGTCGCACCTGCCC
CTATGTTGATGGCGATGAGACCAAGGACCACCGTTGATACTTTCCGAAAT
TCCGATGTGCCGAATCTCGAAAGCACGCTCGGGTAGTACATGAGCTCTAT
CGTTGAAAGCAGTTGCTGCCGGCGGGTTAGGTTGCCGTGCAACTGTAGTA
CTTCGCACGCGCGTTGTCGAATCGTTGTTTGGTACTCCTTGCTTATTGAT
ACTATTTGAGATAGTATCAAACGTGGGCACCTCCGTGTTTCTGTCCTTCA
GAGGTTGTATGCTGTTCGAACATGGATGTTCTGATTCCTACATATACCCC
CCTAAAGAATGAGCGTATAGTAATACATAGTGGCGTGCTTCCATGTTCTT
TTATTATCTACCCTAAACGAAACTCACCATACACATCCACACTCGCAAGG
CTGCGATGATGTACAGCGAATATATGTATCGTTGCTGAGATGATCGCCTC
ATAGCAGTGTATCCCTAACCTCCTTTGGAATTAGCCGGGCGGGTGGTATG
ACTTGGTGGTACACTCGAAATCGATGAAGGCCGCAGCGGTTTGATTAATT
CTACATTCAACAAAGAACAACGCTTTTCTCTTTCTTTTTTTCAATTCAAC
GCTTGGTACAGACAGCGAGCTTATCGTTTGTTCACGGTCAAGAGTTTCAA
TAGGACCGCTGCAAGGTGGCTCGGTTGGAAACACATGCGCAAGTGTACCA
GTCGGTTGGCTGCACCGTTTTAGCTATTCCAACGGGAAATGCATATCTTT
TCGTGGGTGTTGATGCAGCTCTCTTTTTTTTTTCTGTGAAGTCAGGTCTA
CATGTTTACATGATGAATGATTGGCGTCTTGGGTGCGTTGTTCATGATGG
ATTCTTCGTTTGTCGTCTGTTGTTCAGTGAGTCATGTCCGCACGATCTTT
CACCAGCCGTTGAGGTTCATGGGGAGGTAATGGAACGTCGCTCGAGATCG
AGTGGTTTTGCAAAGGTCGATGGGAACGAGCAATTGTCTTGGGATCGTGA
AAAATCTCAACTGTATATATTGTCAAGGAGTCAGTTGAACCCAGAAGTTA
CCCGCCCTATCATGCCGCTGGTGCAGCCGTGAATACCAACCGCTCTTCGA
ATCAGAGCCACATTTATTATATGTTTTCCCCACCGCAGGTCAGGTTGGCT
GCCCCCAAGTATTATGGGGATTCTATCCCCATCGTTTAGTGTTGGGTGGA
TCATGCAAGTTGTCCCGGACAGTAATCCTTCCACAGTGGCAAATTCTGTG
AAGCAGCGCAGTGTTGACTTCTGGTTCCCGCCAACAATTCATGTCGCGAA
ACAAGACCATCCTTGGTGTTTTTTTATCCAGTCAGTATTTTTTATGTTGC
ATGGCTGAAGCATTTTATAAATCAAACTCTTTCGTGACATTCGAAACTGG
TCGACACTCAAATCGGTTTTTTGTTACCTTCGAAAGTTGCTTACATGAGC
GTCTCCAATAGTCGCTGTATGCGTCATGGCCTAGGCACGCATCTGTCCTG
AAGTGCGACGTAGGTTCTACGATGTACGTACTATATAGCTCTTCTTAGGA
CCACACAGACAGTGGCGAAGGCATGGTTCTTGAATGACGTTGAAGATCTC
AAGCGCTCTCCGTAATTATCAACGGCTACTTCGTCGATTTCGCGTGCAAA
TTCATCTCGTTGCATGGAACGCCAGCCATAACTACACCCCCGCAACGTAC
CAGTGTGTGGAACTGAACGATGTAACGGCTATATCCAAAACACCCGTAAG
AGTTCAGCCGGGCACCATGAGTTCCTGGTGCTCCCAACATGTGGAGTTGT
AGTGCATCGTATGTAAACGCTAATTACATGAAATTTTAGGATGGATTGAA
ATTCAGAAGCCAAGCGTACCGGAATTTACGAATTTACACAGTTTGAAACA
TGAGACGAATCAACACAAAGCAGTGCTACAGGAGGTTGAAGTGATGTGTG
AGAAGTGATGTGTGAGAAGTGATGTGTGAGACTGTTCACCGGGTGTACGA
CCGTATTGTGGTCACCAGTAGTGACCATCCATGGACTTCTAAATGAAGAA
ACACGTAAGTCACCCGAGACACATAATGTTCGTTCGAGATGGTTGTGAAT
ACTCCACTCGTATTTGTTTGGGGCGTGAATTGTTGCGATTTCTTTTCACT
ATTCGTAAGGTAGACAGACGGTCGCAAATCTCCGATAGAACATTTCTGAA
TGTTACTTATTACCGTGTGCACTTGTCTCACCTTGAAAAACCCGAGAAAT
AACGACGCTGGATGGAATATATCAGGAAGCGCAAGTGTCATGTGCTGCAT
AATATCAACAGTTGGAATCTATTTTCTGTTCCGAAGCAGCCTTGGCCTCC
TGCATGGGTAAGATACACACTAGTGAATATGGTCCTATGGCAGCGGTTTT
CTGCATTTCCTCCGGTGTGCTGTACAGTACCCAATTAATAGGTACCACTA
GACGTTGATGGCCATTTGTTTGTTACCGTCGTCTCTCCAAAACTAGGCCC
GAGGACTGTGCTCAGCTGTATATGCGACTGTGAAGAACCAACGTATTGAC
CAGGCATGGTTCCCTCCTTCCCTCCTTTCCTCCCTCGACTTTGTTGCAAC
TACGGCGGACTGGAAACACGTGAAAAACAATAATTATGACGTTTTTAACA
GGAGGAAATACTCGAGGCGTTCAAGGTATTCGACAAGGACGGTAACGGGT
TCATCAGCGCAGCAGAGCTTCGCCACATTATGACGAACCTGGGCGAGAAA
CTCACGGATGAGGAGGTCGATGAGATGATCCGTGAGGCGGATATCGATGG
AGACGGGCAAATTAACTACGAAGAGTTTGTGAAGATGATGATGTCCAAAT
AGGGCGAGCACAGAAATCTTTAGAGAAAATATTACAGAAGAAAAAGAGCG
AAGAAAGTCCCCCCCCTCCCCCACCCCCATTTTCCCTACGCCGCGCTCTC
CATCTCCCCACCCCCCTTCCACCCTTCCTCAGTTTTTGAAGGAAATCAAG
CAGTTCAATATGTAGAATACTGTCTTAAATTCGGGATATTTGTTGAGTAG
AATCCGAACTGGGTCGTATATTGCGGTGTTTCCTATCCGCTATTATATTT
CTGCTCGATTTTTTGAAGGCGGGGAAAAACAAGTACTTGTGCTTTTTTTA
TTTTGGTGTATGACGAGGCGTTCAATTGTCAAAATCATCGTGCGGTTTAG
TGGAACACACGCATCATCTTGGTAGAAAAATTGTGTGCTTTGCGCGCGAC
AGTGGTAGCCGTTTTTTTTTTCTTTTTTTTTCACGGGGGCGGTTCGTGGT
TGTGTGTGTGTAGGCTGATGTCTTTTGGGCGAACAGGAAAACCGTAAATG
GGTTACAAGGTGGTCGGGCCGGGGGTTGGGGGGTGGTGATAACAGACTCG
AGGGATACAAAGCGTAGTGCGCCAGGCATCGTGGACGAAAACTATGGACG
GGTGGTATGAGTTGGAACACACCGGGAAGATTTGCAGGAAAGCAGTCAAA
ATCAAATCAACGTGAGTGCTGGGGTGTTGGAAGAAGCTGAATGGTTCACG
TGGCAGACGGGGGCGAAGATTCATCATTCGTGAGCCCGCCTTCTGGTGCG
TCTTTTTCTCTTTTGTCGTCCTGAGTCCATGACAAGCTTGTATAGCCCAC
ACATTTTGTTTCTTTATTTTTGGTACTATCAGTACATGTCAGTGGCACCA
GGAGTCAGGGTACGGGTGTGTGCTGTAGAGTTCTGCGTGTCCCGCCTTTC
TTGGCGGGCTGTTCTAGCGCCGTTTTATGTTTTCTGTGCGGTTTCTCTTT
TTTCTTCCGCGGGGGCCTCGCCGTTGTGCTGAATCATCATAGGTTGGTTG
GACGTGGGGTTTTGTCGTACAGTTATTTCGTCAGTTGGTCTAGGTGGTGT
TACAAAAAAGACTCAATTCAAACCGGGTTTGAGGTTGCCCCCCTTCCTCC
CACTGATCTCGAGGTTTCTCTAGGTTTTTCGAGCCGCCACAGCCCATCCC
ATGCGAGAGTCTTGTGGTAAATTAGGTGCGTGAGTCTTCCTTCTTGATTT
TCGGTCGACAGCGTTCAGTTGAGATCATCGTCTCTCAAATATGACCTAGC
CTGATATCTGAACTCGTGGCAGGCACCCTAATTTCGCCCCCATGTACTTG
GAGCGTGCGGGCACTTGCGTGTGCGTGGCTTGATTAAATTGCGTCGGTTT
TACGCCGCAAGTACATGTGTGACGATTCGCGTTATTTGTTAACCAGCTGT
TGATGTCTTTCTTTCCGTGTGTTTCGTTTTCTACCTTGGCACAAAACGTT
GGGCAAGGGGGCGGCAAACGAGCTGGCGGAAGCCATGATGCGCACGTTTT
TTTCCTGTTTCATAATTGTTTCGTGGCTCATGTGTTATTTTTCATCGGCT
CATGTTGCTGGATGTTTCCTGTTCTCTTAACAATGTGGACGTTTGTTTTT
TTTTTTCAGCTTTAGTCCAGGGGAAAAAAAAAGCGTCTTTGTGTTCTCCG
TCTCGCATCGTTTTTTTTCATTTTTTTCTTTGGCTTTTTTTCGTTTTTTT
TCATAATCTCGTGTTCCGTCGTGTCATTATCTTGGTTTCTATTCCAGCTC
TCGCTTGAGGGTTCGGATATCAGGCGTGTCATCGTCTGTTCGATGGGACG
GGGGGAAGTAGGGGAGCAAAAATTATGGTTTTTCAACGTGACGTGACGTG
ATGGGGTCTCGGGTCATCGGGAGATGATTCATTGAAGTTTAAAACCAAGT
ATCGAGTGGTGCGCCCTTTGGTGGGTCCCTCGTCTCCCTCCCCGCCTCTG
CAGTCCCTTAGCGACGGGCGGGGTACTTGCTGCTATTTTGCTCGAATGAT
GTAAAGGTTTGCCGAGCGGCAGTCGCGTAGCTCGAGCTGTGTAGTTGGGG
CGGCGTTGAGCGTCGACTAATTCCACCGTTTCGGCTGTTGATTGGTGGCG
GTGAACGAAGACTTTGATCATGTTGTTGCGTTTTGTTTTTTTTTTCCGAT
GCTCCCTTGGAAGAAAAATTCAGGGAGAGATTTTAGAAAACGCAAAGAGA
AGAAAAACGAGCGATTTGTAGGTTTGAGTGGCAATAGTAGTCTCGGTTCT
TCAGTTGGCGCCTGCTTCCATTCTCGATTTTCGTGAAGTACATGACAAAT
ACACACGCGTCCAAGAAAGAACGAAGTCGTGGGCTGTGCTTGTTTTGAGC
GGACAGGGAGAGGAGTTGGCGGGGGGAGGAGGGGGCGCGTTGTAGGAATG
TGCGGGTGGTGTTTTTTGGAAAATCACGGATGGATGGACTCAGTTCGAGG
TGGAGACGGAGGCGACGGGGCAGAGAGGGCGGAACGGCAAGGGAAAGAGC
AGACTGTTGTCCTGGGCCTGTATTGATGTGTTTGTGTCACTAATTGTTTT
GACAAGTGTACATAGTACGGGCGCGCGCGGCGAGAACGCATAAGTTTAGA
CAAGAGGGCGTTGAAGGAAGAGATAACCAGTACACTACTATTACGATTAC
TACTACTACTACTGCAATTGAGAGCAAGGGGTGAAGAGCAAAAGAGTGTG
TGATGGATGGGGGGAGAGGGAGAGCCTCCGGCAGCAACCAGCACATGTTT
TTGGTCTCTTGTTGTGTTCGGTGCGTGCACGCACACGTACCCCGTCTTTA
GTGAGAACGCTGTCTCTCAGTTCATGTACTGGTCTCTTTCTTGTTAGCTT
AAGGGGGAAGGAAAAATGGACGAACGAAATACGACGCCGGCAGTCCGCTC
AAAACGCACACTTTTTTGGGGGTCGGGGGGAGGGAGGGGGGAGGTTGGGT
GGTCGCTAGGGAAACTAATAAAGTGGGATTGAAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4791:3617..10950-

>mRNA_H-paniculata_contig4791.11865.1 ID=mRNA_H-paniculata_contig4791.11865.1|Name=mRNA_H-paniculata_contig4791.11865.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=900bp|location=Sequence derived from alignment at H-paniculata_contig4791:3617..10950- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCGATCAACTCACGGAAGAGCAAATCGCCGAATTCAAGGAGGCCTT
CAGTCTGTTCGACAAGGACGGCGATGGGACCATCACCACCAAGGAGCTCG
GTACCGTGATGCGTTCCTTGGGCCAGAACCCCACGGAAGCCGAATTGGCC
GACATGATCAATGAGGTTGATGCGGATGGTAACGGGACCATCGACTTTCC
CGAGTTCTTGACCATGATGGCGCGGAAGATGAAGGACACGGATTCTGAGA
TGGCCGATCAACTCACGGAAGAGCAAATCGCCGAATTCAAGGAGGCCTTC
AGTCTGTTCGACAAGGACGGCGATGGGACCATCACCACCAAGGAGCTCGG
TACCGTGATGCGTTCCTTGGGCCAGAACCCCACGGAAGCCGAATTGGCCG
ACATGATCAATGAGGTTGATGCGGATGGTAACGGGACCATCGACTTTCCC
GAGTTCTTGACCATGATGGCGCGGAAGATGAAGGACACGGATTCTGAGGA
GGAAATACTCGAGGCGTTCAAGGTATTCGACAAGGACGGTAACGGGTTCA
TCAGCGCAGCAGAGCTTCGCCACATTATGACGAACCTGGGCGAGAAACTC
ACGGATGAGGAGGTCGATGAGATGATCCGTGAGGCGGATATCGATGGAGA
CGGGCAAATTAACTACGAAGAGTTTGTGAAGATGATGATGTCCAAATAGG
AGGAAATACTCGAGGCGTTCAAGGTATTCGACAAGGACGGTAACGGGTTC
ATCAGCGCAGCAGAGCTTCGCCACATTATGACGAACCTGGGCGAGAAACT
CACGGATGAGGAGGTCGATGAGATGATCCGTGAGGCGGATATCGATGGAG
ACGGGCAAATTAACTACGAAGAGTTTGTGAAGATGATGATGTCCAAATAG
back to top