mRNA_H-paniculata_contig4791.11864.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4791.11864.1
Unique NamemRNA_H-paniculata_contig4791.11864.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4791.11864.1 vs. uniprot
Match: D7G3B8_ECTSI (DNA primase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3B8_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 3.910e-5
Identity = 48/139 (34.53%), Postives = 69/139 (49.64%), Query Frame = 3 
Query:    3 EVAEMDAQRRLFTSRLPKVKAETDAYQAQQKRSQL-TVASAGSAGEDVAAVIVAAATQQHQMQAPVVRAKNTPASVPMGGHREER-----NEARGDKGQEDRQPSSFDHLPMKFLDENLDPEEGVNIYDVQGNISKARA 401
            EV E +A+R+ FT+RLPKV+AET+A + Q+ R++  ++A                                 PA        +ER      + R + G ED    S + LP +FLDE+ +PEEG+NIYDV GNI+ A A
Sbjct: 1059 EVTEFEARRKAFTNRLPKVRAETEAIRKQEARAKRQSMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPADTRY----DERXXXXLQQLRREAGGEDEGELSVEDLPYRFLDEDKEPEEGINIYDVDGNIAAAMA 1193
[Close]
BLAST of mRNA_H-paniculata_contig4791.11864.1 vs. uniprot
Match: A0A6H5K157_9PHAE (Toprim domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K157_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 5.190e-5
Identity = 43/134 (32.09%), Postives = 67/134 (50.00%), Query Frame = 3 
Query:    3 EVAEMDAQRRLFTSRLPKVKAETDAYQAQQKRSQLTVASAGSAGEDVAAVIVAAATQQHQMQAPVVRAKNTPASVPMGGHREER-NEARGDKGQEDRQPSSFDHLPMKFLDENLDPEEGVNIYDVQGNISKARA 401
            EV E++A+R+ FT RLPKV+AET+A + ++ R++    +A                                         +++  + R + G ED    S + LP +FLDE+ DPE+G+NIYDV+GNI+ A A
Sbjct:  961 EVTELEARRKAFTKRLPKVRAETEAIRKREARAKRQSLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRYDERGQQQLQQLRREAGGEDGGELSVEDLPYRFLDEDQDPEDGINIYDVEGNIAAAMA 1094
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4791.11864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3B8_ECTSI3.910e-534.53DNA primase n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5K157_9PHAE5.190e-532.09Toprim domain-containing protein n=1 Tax=Ectocarpu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4791contigH-paniculata_contig4791:513..2115 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1603
Cds size1101
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4791.11864.1prot_H-paniculata_contig4791.11864.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4791 527..1627 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930420.4465902-UTR-H-paniculata_contig4791:512..5261622930420.4465902-UTR-H-paniculata_contig4791:512..526Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4791 513..526 +
1691481284.142522-UTR-H-paniculata_contig4791:512..5261691481284.142522-UTR-H-paniculata_contig4791:512..526Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4791 513..526 +
1622930420.4780498-UTR-H-paniculata_contig4791:1627..21151622930420.4780498-UTR-H-paniculata_contig4791:1627..2115Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4791 1628..2115 +
1691481284.162125-UTR-H-paniculata_contig4791:1627..21151691481284.162125-UTR-H-paniculata_contig4791:1627..2115Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4791 1628..2115 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930420.4619625-CDS-H-paniculata_contig4791:526..16271622930420.4619625-CDS-H-paniculata_contig4791:526..1627Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4791 527..1627 +
1691481284.1525686-CDS-H-paniculata_contig4791:526..16271691481284.1525686-CDS-H-paniculata_contig4791:526..1627Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4791 527..1627 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4791.11864.1

>prot_H-paniculata_contig4791.11864.1 ID=prot_H-paniculata_contig4791.11864.1|Name=mRNA_H-paniculata_contig4791.11864.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=367bp
MDAQRRLFTSRLPKVKAETDAYQAQQKRSQLTVASAGSAGEDVAAVIVAA
ATQQHQMQAPVVRAKNTPASVPMGGHREERNEARGDKGQEDRQPSSFDHL
PMKFLDENLDPEEGVNIYDVQGNISKARAAAAFTVSTATAAVPRDSSLTE
TPAGDSAFSQPCGGPEGLTISSGGGVMSAGEGDDHAVIPLADATVVAAPA
TSRSAVPLQPQVQQQQQRPEAASSKLSQGSAVEPLPLATAVSGAAVAISP
VVVTGQTPRAPPRQAKLGFTPPRVLPAAIATDGWSIGETESIRSAWTGDG
DAGSSGASAMRGGVGEVVKERGVESDAAVRALREAEEQAEMLEEDDLLVN
FGGGSGGGWWSEPPGD*
back to top

mRNA from alignment at H-paniculata_contig4791:513..2115+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4791.11864.1 ID=mRNA_H-paniculata_contig4791.11864.1|Name=mRNA_H-paniculata_contig4791.11864.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1603bp|location=Sequence derived from alignment at H-paniculata_contig4791:513..2115+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGAGGTGGCCGAGATGGATGCACAGCGGAGGCTGTTCACCAGCCGCCTA
CCGAAGGTGAAAGCGGAGACGGATGCTTACCAGGCTCAGCAAAAGCGCTC
CCAGCTTACGGTGGCGTCGGCAGGGTCGGCGGGGGAAGATGTAGCAGCAG
TGATAGTGGCAGCGGCAACCCAGCAGCACCAAATGCAAGCCCCTGTTGTT
CGTGCTAAGAATACTCCAGCTAGCGTCCCTATGGGCGGGCACCGAGAAGA
GAGAAACGAAGCGAGAGGAGATAAAGGGCAGGAAGACCGACAACCGTCGT
CATTTGACCATCTGCCGATGAAATTTTTAGACGAGAATCTCGATCCCGAA
GAAGGGGTCAACATCTACGACGTCCAGGGAAACATAAGTAAGGCACGTGC
CGCCGCCGCTTTCACTGTTTCCACCGCTACGGCTGCTGTGCCGCGCGATT
CTTCTCTGACCGAAACCCCCGCGGGAGATAGTGCGTTTTCGCAACCGTGT
GGTGGTCCTGAGGGCTTGACGATCTCGAGCGGAGGCGGTGTCATGAGTGC
TGGAGAGGGCGATGACCATGCGGTGATTCCTCTTGCTGATGCTACCGTCG
TGGCAGCGCCGGCGACTTCTCGTTCAGCCGTCCCTCTACAGCCACAAGTA
CAACAACAACAACAACGGCCAGAGGCCGCCTCAAGCAAGCTATCACAGGG
CTCGGCCGTCGAGCCTCTTCCGCTTGCGACAGCTGTCAGCGGGGCGGCAG
TGGCTATTTCACCAGTTGTGGTGACAGGACAGACACCGCGAGCGCCACCC
AGACAAGCAAAGCTCGGATTTACACCGCCTCGAGTATTGCCTGCTGCGAT
AGCCACAGACGGCTGGAGCATCGGAGAGACGGAAAGTATTCGGAGCGCTT
GGACTGGTGATGGGGATGCTGGGTCTAGTGGTGCTTCGGCGATGCGAGGC
GGTGTGGGTGAAGTAGTCAAGGAAAGGGGGGTTGAGTCAGATGCTGCGGT
GAGGGCTTTGAGAGAGGCGGAAGAGCAAGCGGAGATGCTGGAAGAGGATG
ATTTACTTGTTAATTTTGGCGGAGGGTCGGGAGGAGGATGGTGGAGCGAG
CCCCCAGGCGATTAGTGAACTCTATCTATATGTTTGTGTGCGTGTGTGTG
GTGGTGGTTGTGGTGTTGCACAAGCGTCGTCGTTCATGTCGTGATATCCT
TCTTGTTGATGGAAGCGCAGGTGTACTTTTAAATTGAACACGGGAGTGGT
TTGGGAACATACTCGCGAGTCTTGCTTCGCAGCTGTGAAAATAGGGGAGA
GGGGGGCGTGGACAGCTCTGCCTGGGGGGGTCATGCTGTCGCAGCTTTGG
TTGTGTCAGTAGGGCGATGGGCAACGGCCAGGTCTTGCGGGCGGCAGAAA
ATACAGTAAAATTGTTGGTTCCTAATATACATCTGGGATAGACTTTGGGA
ACTTTGAAGTAGTTGTTCGTAAGATTGAAGTGGAGCAGCGCTCACAAGAG
AGGTGGCCAATGTCTGCAGCTCCATTGTATTTGTCCTCTCTGTGAATGAA
CCAATTTACTGTCATGACCATGTTGTGTACATATGCCGGAGGGTGTTCAG
GGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4791:513..2115+

>mRNA_H-paniculata_contig4791.11864.1 ID=mRNA_H-paniculata_contig4791.11864.1|Name=mRNA_H-paniculata_contig4791.11864.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2202bp|location=Sequence derived from alignment at H-paniculata_contig4791:513..2115+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGCACAGCGGAGGCTGTTCACCAGCCGCCTACCGAAGGTGAAAGC
GGAGACGGATGCTTACCAGGCTCAGCAAAAGCGCTCCCAGCTTACGGTGG
CGTCGGCAGGGTCGGCGGGGGAAGATGTAGCAGCAGTGATAGTGGCAGCG
GCAACCCAGCAGCACCAAATGCAAGCCCCTGTTGTTCGTGCTAAGAATAC
TCCAGCTAGCGTCCCTATGGGCGGGCACCGAGAAGAGAGAAACGAAGCGA
GAGGAGATAAAGGGCAGGAAGACCGACAACCGTCGTCATTTGACCATCTG
CCGATGAAATTTTTAGACGAGAATCTCGATCCCGAAGAAGGGGTCAACAT
CTACGACGTCCAGGGAAACATAAGTAAGGCACGTGCCGCCGCCGCTTTCA
CTGTTTCCACCGCTACGGCTGCTGTGCCGCGCGATTCTTCTCTGACCGAA
ACCCCCGCGGGAGATAGTGCGTTTTCGCAACCGTGTGGTGGTCCTGAGGG
CTTGACGATCTCGAGCGGAGGCGGTGTCATGAGTGCTGGAGAGGGCGATG
ACCATGCGGTGATTCCTCTTGCTGATGCTACCGTCGTGGCAGCGCCGGCG
ACTTCTCGTTCAGCCGTCCCTCTACAGCCACAAGTACAACAACAACAACA
ACGGCCAGAGGCCGCCTCAAGCAAGCTATCACAGGGCTCGGCCGTCGAGC
CTCTTCCGCTTGCGACAGCTGTCAGCGGGGCGGCAGTGGCTATTTCACCA
GTTGTGGTGACAGGACAGACACCGCGAGCGCCACCCAGACAAGCAAAGCT
CGGATTTACACCGCCTCGAGTATTGCCTGCTGCGATAGCCACAGACGGCT
GGAGCATCGGAGAGACGGAAAGTATTCGGAGCGCTTGGACTGGTGATGGG
GATGCTGGGTCTAGTGGTGCTTCGGCGATGCGAGGCGGTGTGGGTGAAGT
AGTCAAGGAAAGGGGGGTTGAGTCAGATGCTGCGGTGAGGGCTTTGAGAG
AGGCGGAAGAGCAAGCGGAGATGCTGGAAGAGGATGATTTACTTGTTAAT
TTTGGCGGAGGGTCGGGAGGAGGATGGTGGAGCGAGCCCCCAGGCGATTA
GATGGATGCACAGCGGAGGCTGTTCACCAGCCGCCTACCGAAGGTGAAAG
CGGAGACGGATGCTTACCAGGCTCAGCAAAAGCGCTCCCAGCTTACGGTG
GCGTCGGCAGGGTCGGCGGGGGAAGATGTAGCAGCAGTGATAGTGGCAGC
GGCAACCCAGCAGCACCAAATGCAAGCCCCTGTTGTTCGTGCTAAGAATA
CTCCAGCTAGCGTCCCTATGGGCGGGCACCGAGAAGAGAGAAACGAAGCG
AGAGGAGATAAAGGGCAGGAAGACCGACAACCGTCGTCATTTGACCATCT
GCCGATGAAATTTTTAGACGAGAATCTCGATCCCGAAGAAGGGGTCAACA
TCTACGACGTCCAGGGAAACATAAGTAAGGCACGTGCCGCCGCCGCTTTC
ACTGTTTCCACCGCTACGGCTGCTGTGCCGCGCGATTCTTCTCTGACCGA
AACCCCCGCGGGAGATAGTGCGTTTTCGCAACCGTGTGGTGGTCCTGAGG
GCTTGACGATCTCGAGCGGAGGCGGTGTCATGAGTGCTGGAGAGGGCGAT
GACCATGCGGTGATTCCTCTTGCTGATGCTACCGTCGTGGCAGCGCCGGC
GACTTCTCGTTCAGCCGTCCCTCTACAGCCACAAGTACAACAACAACAAC
AACGGCCAGAGGCCGCCTCAAGCAAGCTATCACAGGGCTCGGCCGTCGAG
CCTCTTCCGCTTGCGACAGCTGTCAGCGGGGCGGCAGTGGCTATTTCACC
AGTTGTGGTGACAGGACAGACACCGCGAGCGCCACCCAGACAAGCAAAGC
TCGGATTTACACCGCCTCGAGTATTGCCTGCTGCGATAGCCACAGACGGC
TGGAGCATCGGAGAGACGGAAAGTATTCGGAGCGCTTGGACTGGTGATGG
GGATGCTGGGTCTAGTGGTGCTTCGGCGATGCGAGGCGGTGTGGGTGAAG
TAGTCAAGGAAAGGGGGGTTGAGTCAGATGCTGCGGTGAGGGCTTTGAGA
GAGGCGGAAGAGCAAGCGGAGATGCTGGAAGAGGATGATTTACTTGTTAA
TTTTGGCGGAGGGTCGGGAGGAGGATGGTGGAGCGAGCCCCCAGGCGATT
AG
back to top