mRNA_H-paniculata_contig47799.11843.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig47799.11843.1
Unique NamemRNA_H-paniculata_contig47799.11843.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig47799.11843.1 vs. uniprot
Match: D8LRC6_ECTSI (Monooxygenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRC6_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 9.530e-33
Identity = 65/93 (69.89%), Postives = 72/93 (77.42%), Query Frame = 1
Query:    1 QDAYCLAERVAQLNRGG-YEGDVFSALRDYERRRKPETSSVLAKSVVVGAIETLGGFPG-----ENFRDNFFFTMWKLGVAERIFMDGAMPKV 261
            QDAYCLA R+A LN G  +EG + +ALRDYER RKP+TS VLAKS  VGA+ETLGG  G     E FRDNFFF MWK GVAE+IFMDGAMPKV
Sbjct:  407 QDAYCLARRLADLNSGAAFEGSLIAALRDYERARKPDTSLVLAKSAFVGAVETLGGAAGGGALGEAFRDNFFFGMWKAGVAEQIFMDGAMPKV 499          
BLAST of mRNA_H-paniculata_contig47799.11843.1 vs. uniprot
Match: A0A6H5KSV7_9PHAE (FAD_binding_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSV7_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 4.880e-32
Identity = 64/93 (68.82%), Postives = 71/93 (76.34%), Query Frame = 1
Query:    1 QDAYCLAERVAQLNRGG-YEGDVFSALRDYERRRKPETSSVLAKSVVVGAIETLGGFPG-----ENFRDNFFFTMWKLGVAERIFMDGAMPKV 261
            QDAYCLA R+A LN G  +EG + +ALR YER RKP+TS VLAKS  VGA+ETLGG  G     E FRDNFFF MWK GVAE+IFMDGAMPKV
Sbjct:  223 QDAYCLAGRLADLNSGAAFEGSLIAALRYYERVRKPDTSLVLAKSAFVGAVETLGGAAGGGAVGEAFRDNFFFGMWKAGVAEQIFMDGAMPKV 315          
BLAST of mRNA_H-paniculata_contig47799.11843.1 vs. uniprot
Match: A0A836CJN1_9STRA (Monooxygenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJN1_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 3.390e-22
Identity = 50/87 (57.47%), Postives = 61/87 (70.11%), Query Frame = 1
Query:    1 QDAYCLAERVAQLNRGGYEGDVFSALRDYERRRKPETSSVLAKSVVVGAIETLGGFPGENFRDNFFFTMWKLGVAERIFMDGAMPKV 261
            QDAYCLAER+  L RG Y G V  A+R YE  RKP  +S+LAKSV +G +ETL G  G   RDNFF  M  +GVAE+IF+DG +P+V
Sbjct:  354 QDAYCLAERLQALKRGDY-GSVREAVRSYEATRKPLVASLLAKSVFLGGVETLDGPVGAFVRDNFFSVMGTVGVAEKIFVDGGVPRV 439          
BLAST of mRNA_H-paniculata_contig47799.11843.1 vs. uniprot
Match: A0A7S1UMX4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UMX4_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 6.730e-14
Identity = 43/89 (48.31%), Postives = 54/89 (60.67%), Query Frame = 1
Query:    1 QDAYCLAERVAQLNRGGYEGDVFSALRDYERRRKPETSSVLAKSVVVGAIETLGGFPGE--NFRDNFFFTMWKLGVAERIFMDGAMPKV 261
            QDAYCLA  +  +N G    D   AL  YE  R+P T  +LAKS  +G +ETL   PGE    R+ FF     LGVAE++F+DGAMP+V
Sbjct:  345 QDAYCLAAALRDVNAGAASLDA--ALSKYEAVRRPPTVELLAKSAFLGELETL---PGELSRLRNGFFSVTGALGVAEKVFVDGAMPRV 428          
BLAST of mRNA_H-paniculata_contig47799.11843.1 vs. uniprot
Match: A0A7S2IGA1_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IGA1_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 5.130e-12
Identity = 41/98 (41.84%), Postives = 58/98 (59.18%), Query Frame = 1
Query:    1 QDAYCLAERVAQLNRG---------GYEGDVFSALRDYERRRKPETSSVLAKSVVVGAIETLGGFPG--ENFRDNFFFTMWKLGVAERIFMDGAMPKV 261
            QDAY LA  + + N               D+ + LRDYER+R   T+S+ AK++ +G +ET  G+ G    FRD FFFTM  +GVA+++F+D A PKV
Sbjct:  290 QDAYSLATAIFEHNANVEIICEDTNDDVKDLGALLRDYERKRWFPTTSITAKAIFLGYLET--GYEGFLSKFRDVFFFTMGNIGVAKKVFLDAATPKV 385          
BLAST of mRNA_H-paniculata_contig47799.11843.1 vs. uniprot
Match: A0A7S0CA60_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CA60_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 4.460e-11
Identity = 31/62 (50.00%), Postives = 44/62 (70.97%), Query Frame = 1
Query:   76 LRDYERRRKPETSSVLAKSVVVGAIETLGGFPGENFRDNFFFTMWKLGVAERIFMDGAMPKV 261
            L+ YE +R   T+S+  K+  +G +ET GGF  + FRD FFFTM K+GVA ++F+DGA P+V
Sbjct:   68 LKRYESKRWRVTTSLTVKAAFLGYLETGGGFLSK-FRDVFFFTMGKIGVARKVFLDGATPRV 128          
BLAST of mRNA_H-paniculata_contig47799.11843.1 vs. uniprot
Match: A0A7S1YRN5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YRN5_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 4.620e-11
Identity = 40/98 (40.82%), Postives = 57/98 (58.16%), Query Frame = 1
Query:    1 QDAYCLAERVAQLN---------RGGYEGDVFSALRDYERRRKPETSSVLAKSVVVGAIETLGGFPG--ENFRDNFFFTMWKLGVAERIFMDGAMPKV 261
            QDAY LA+ + + N               D+   LRDYE++R   T+S+  K++ +G +ET  G  G    FRD FFFTM K+GVA+++F+D A PKV
Sbjct:  284 QDAYSLAKAIFEHNANIEMIREDNSEDVKDLGGLLRDYEQKRWFPTTSITVKAIFLGYLET--GSEGFLSKFRDVFFFTMGKIGVAKKVFLDAATPKV 379          
BLAST of mRNA_H-paniculata_contig47799.11843.1 vs. uniprot
Match: A0A7S4WEV9_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4WEV9_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 5.130e-11
Identity = 40/98 (40.82%), Postives = 57/98 (58.16%), Query Frame = 1
Query:    1 QDAYCLAERVAQLN---------RGGYEGDVFSALRDYERRRKPETSSVLAKSVVVGAIETLGGFPG--ENFRDNFFFTMWKLGVAERIFMDGAMPKV 261
            QDAY LA+ + + N               D+   LRDYE++R   T+S+  K++ +G +ET  G  G    FRD FFFTM K+GVA+++F+D A PKV
Sbjct:  525 QDAYSLAKAIFEHNANVEMIREDNSEDVKDLGGLLRDYEQKRWFPTTSITVKAIFLGYLET--GSEGFLSKFRDVFFFTMGKIGVAKKVFLDAATPKV 620          
BLAST of mRNA_H-paniculata_contig47799.11843.1 vs. uniprot
Match: A0A5J4Z6A9_PORPP (FAD-dependent urate hydroxylase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z6A9_PORPP)

HSP 1 Score: 65.5 bits (158), Expect = 1.780e-10
Identity = 35/88 (39.77%), Postives = 56/88 (63.64%), Query Frame = 1
Query:    1 QDAYCLA-ERVAQLNRGGYEGDVFSALRDYERRRKPETSSVLAKSVVVGAIETLGGFPGENFRDNFFFTMWKLGVAERIFMDGAMPKV 261
            QDAYCLA E V++L+   Y  D+  A R Y  +R   T+ ++ +SV++G+IE   G  G  FR+  F  + +LGV E++++ GA+P+V
Sbjct:  482 QDAYCLATELVSKLDSESYT-DLEPAFRRYTTKRFLPTTKIIIESVLIGSIEAPAGALGVIFRNALFSMLGRLGVPEKVYVSGALPRV 568          
BLAST of mRNA_H-paniculata_contig47799.11843.1 vs. uniprot
Match: A0A7S3BHV6_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BHV6_9EUKA)

HSP 1 Score: 60.5 bits (145), Expect = 1.410e-9
Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = 1
Query:   70 SALRDYERRRKPETSSVLAKSVVVGAIETLGGFPGENFRDNFFFTMWKLGVAERIFMDGAMPK 258
            +AL  Y+R R   T+ +LA S V+G +ET  G PG  FRD FFFT  KLG+A+ +F+DGAM +
Sbjct:   83 AALGAYQRARWLPTARLLANSRVLGFLETQRG-PGALFRDAFFFTTGKLGIAKAVFLDGAMMR 144          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47799.11843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D8LRC6_ECTSI9.530e-3369.89Monooxygenase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A6H5KSV7_9PHAE4.880e-3268.82FAD_binding_3 domain-containing protein n=1 Tax=Ec... [more]
A0A836CJN1_9STRA3.390e-2257.47Monooxygenase n=1 Tax=Tribonema minus TaxID=303371... [more]
A0A7S1UMX4_9STRA6.730e-1448.31Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2IGA1_9STRA5.130e-1241.84Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S0CA60_9STRA4.460e-1150.00Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S1YRN5_9STRA4.620e-1140.82Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4WEV9_9STRA5.130e-1140.82Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A5J4Z6A9_PORPP1.780e-1039.77FAD-dependent urate hydroxylase n=1 Tax=Porphyridi... [more]
A0A7S3BHV6_9EUKA1.410e-950.79Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig47799contigH-paniculata_contig47799:1038..1301 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.6
Seed ortholog evalue1.4e-27
Seed eggNOG ortholog2880.D8LRC6
KEGG rclassRC00389
KEGG koko:K00480
KEGG ReactionR00818,R05632,R06915,R06936,R06939
KEGG Pathwayko00621,ko00624,ko00626,ko01100,ko01120,ko01220,map00621,map00624,map00626,map01100,map01120,map01220
Hectar predicted targeting categoryother localisation
EggNOG free text desc.FAD binding
EggNOG OGsCOG0654@1,KOG2614@2759
Ec32 ortholog descriptionMonooxygenase
Ec32 orthologEc-06_003030.2
EC1.14.13.1
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size264
Cds size264
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930417.243248-CDS-H-paniculata_contig47799:1037..13011622930417.243248-CDS-H-paniculata_contig47799:1037..1301Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47799 1038..1301 -
1691481282.595991-CDS-H-paniculata_contig47799:1037..13011691481282.595991-CDS-H-paniculata_contig47799:1037..1301Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47799 1038..1301 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig47799.11843.1prot_H-paniculata_contig47799.11843.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig47799 1038..1301 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig47799.11843.1

>prot_H-paniculata_contig47799.11843.1 ID=prot_H-paniculata_contig47799.11843.1|Name=mRNA_H-paniculata_contig47799.11843.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=88bp
QDAYCLAERVAQLNRGGYEGDVFSALRDYERRRKPETSSVLAKSVVVGAI
ETLGGFPGENFRDNFFFTMWKLGVAERIFMDGAMPKV*
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mRNA from alignment at H-paniculata_contig47799:1038..1301-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig47799.11843.1 ID=mRNA_H-paniculata_contig47799.11843.1|Name=mRNA_H-paniculata_contig47799.11843.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=264bp|location=Sequence derived from alignment at H-paniculata_contig47799:1038..1301- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGATGCGTATTGCTTGGCTGAACGTGTGGCCCAGCTGAACCGAGGTGG GTATGAAGGAGACGTCTTCTCTGCCCTCCGAGACTACGAGCGACGCCGAA AGCCCGAGACGAGTTCTGTGCTAGCTAAGAGCGTAGTTGTGGGTGCGATT GAAACCCTCGGAGGCTTTCCTGGAGAAAACTTCCGGGACAACTTTTTCTT CACCATGTGGAAGCTTGGCGTAGCGGAAAGGATATTTATGGACGGCGCTA TGCCGAAGGTTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig47799:1038..1301-

>mRNA_H-paniculata_contig47799.11843.1 ID=mRNA_H-paniculata_contig47799.11843.1|Name=mRNA_H-paniculata_contig47799.11843.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at H-paniculata_contig47799:1038..1301- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGATGCGTATTGCTTGGCTGAACGTGTGGCCCAGCTGAACCGAGGTGG
GTATGAAGGAGACGTCTTCTCTGCCCTCCGAGACTACGAGCGACGCCGAA
AGCCCGAGACGAGTTCTGTGCTAGCTAAGAGCGTAGTTGTGGGTGCGATT
GAAACCCTCGGAGGCTTTCCTGGAGAAAACTTCCGGGACAACTTTTTCTT
CACCATGTGGAAGCTTGGCGTAGCGGAAAGGATATTTATGGACGGCGCTA
TGCCGAAGGTTTAACAGGATGCGTATTGCTTGGCTGAACGTGTGGCCCAG
CTGAACCGAGGTGGGTATGAAGGAGACGTCTTCTCTGCCCTCCGAGACTA
CGAGCGACGCCGAAAGCCCGAGACGAGTTCTGTGCTAGCTAAGAGCGTAG
TTGTGGGTGCGATTGAAACCCTCGGAGGCTTTCCTGGAGAAAACTTCCGG
GACAACTTTTTCTTCACCATGTGGAAGCTTGGCGTAGCGGAAAGGATATT
TATGGACGGCGCTATGCCGAAGGTTTAA
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