mRNA_H-paniculata_contig47627.11813.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig47627.11813.1 vs. uniprot
Match: A0A4D8ZGL2_SALSN (Cis-zeatin O-glucosyltransferase n=1 Tax=Salvia splendens TaxID=180675 RepID=A0A4D8ZGL2_SALSN) HSP 1 Score: 68.9 bits (167), Expect = 4.220e-10 Identity = 50/201 (24.88%), Postives = 93/201 (46.27%), Query Frame = 1
Query: 25 CGRCSKPGHDLYACPQITDEDACLAEAETEIKLEEALKVDLGEDEFIGAY--IASTSTTGKEEVLSVDSEGLGYRDVGEMEIWICDNGATKHMTHNSDFLFNYQECDG-HVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVACIPLLSHRLLHLGKFADFGHEYRCSREGLRISLETGRVLSAERFGSLDVMRGSPV 618
C C +PGH CP+I K LG+ E Y +A EE L++ ++ + + ++WI D+GA+ H+ + ++ Y++ DG +V +A+ + + G+G + ++ + V L V +P ++ L+ L F G ++ +RI + VL+A ++G+L V+RGS V
Sbjct: 64 CRYCKEPGHRKADCPKI--------------------KKKLGKKEDANGYETVAEADDANSEEELALVADEQPHCN----DVWILDSGASYHLFPHMEYFTTYEQIDGGNVTMANSDVCKVVGIGSIRIRTH---DGVFCTLNDVRHVPQMTKNLISLNTFDSKGFSFKGESGVMRILKGSKMVLTALKWGTLYVLRGSIV 237
BLAST of mRNA_H-paniculata_contig47627.11813.1 vs. uniprot
Match: A0A4D8ZH87_SALSN (CCHC-type domain-containing protein n=1 Tax=Salvia splendens TaxID=180675 RepID=A0A4D8ZH87_SALSN) HSP 1 Score: 62.8 bits (151), Expect = 4.650e-8 Identity = 49/199 (24.62%), Postives = 88/199 (44.22%), Query Frame = 1
Query: 25 CGRCSKPGHDLYACPQITDEDACLAEAETEIKLEEALKVDLGEDEFIGAYIASTSTTGKEEVLSVDSEGLGYRDVGEMEIWICDNGATKHMTHNSDFLFNYQECDG-HVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVACIPLLSHRLLHLGKFADFGHEYRCSREGLRISLETGRVLSAERFGSLDVMRGSPV 618
C C KPGH CPQI K+ +D A +A EE L++ ++ + + ++WI D+GA+ H+ + ++ Y + DG +V +A+ + G+G + + + V L V +P ++ ++ L G ++ +RI + VL+A++ GSL V+RGS V
Sbjct: 69 CRYCKKPGHWKIDCPQIKK------------------KLGKKKDANGSATVAEADDANSEEELALVADEQPHCN----DVWILDSGASYHLCPHREYFTTYGQIDGGNVTMANSVVCKVVGIGSIKTRTH---DGVFCTLNDVRHVPQMTKNMISLSTLDSKGLSFKGESGVMRILKGSKVVLTAQKRGSLYVLRGSIV 242
BLAST of mRNA_H-paniculata_contig47627.11813.1 vs. uniprot
Match: A0A151ITN2_9HYME (Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=A0A151ITN2_9HYME) HSP 1 Score: 62.0 bits (149), Expect = 9.350e-8 Identity = 52/193 (26.94%), Postives = 79/193 (40.93%), Query Frame = 1
Query: 4 RECPNVYCGRCSKPGHDLYAC-PQITDEDACLAEAETEIKLEEALKVDLGEDEFIGAYIASTSTTGKEEVLSVDSEGLGYRDVGEMEIWICDNGATKHMTHNSDFLFNYQEC-DGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVACIPLLSHRLLHLGKFADFGHEYRCSREGLRISLETGRVLSA 576
R + C C K GH + C + DED + E + E ++T EV+ + L +DV WI D+GA++HMTH S+++ N Q D HV L DG + + G G +++Q D + + L V +P L+ L +G A YR + L L A
Sbjct: 222 RSKKEIECFYCHKLGHYIKDCRKKRRDEDQGIRSKEKQKNNE-----------------SNTEAAFSAEVIEKEILNLEVKDV-----WILDSGASRHMTHRSNWISNLQTYKDEHVSLGDGTKCKVHGRGTVYIQRLVDGQWLDGVLEDVLYVPDLNKNLFSVG--ACMNKNYRVVFTNNSVKLFLNNALKA 390
BLAST of mRNA_H-paniculata_contig47627.11813.1 vs. uniprot
Match: A0A4D9AUL3_SALSN (Uncharacterized protein n=1 Tax=Salvia splendens TaxID=180675 RepID=A0A4D9AUL3_SALSN) HSP 1 Score: 58.2 bits (139), Expect = 2.010e-6 Identity = 47/197 (23.86%), Postives = 88/197 (44.67%), Query Frame = 1
Query: 25 CGRCSKPGHDLYACPQITDEDACLAEAETEIKLEEALKVDLGEDEFIGAYIASTSTTGKEEVLSVDSEGLGYRDVGEMEIWICDNGATKHMTHNSDFLFNYQECD-GHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVACIPLLSHRLLHLGKFADFGHEYRCSREGLRISLETGRVLSAERFGSLDVMRGS 612
C +PGH CP+I K+ ED A +A EE L++ + + + ++WI D+GA+ H+ + ++ Y++ D G+V +A+ + G+G + ++ + V L V +P ++ L+ L F G ++ +RI + VL+A ++G+L V+RGS
Sbjct: 69 CRYFKEPGHWKADCPKIKK------------------KLGKKEDANGSATVAEADDANLEEELALVANEQPHCN----DVWILDSGASYHLCPHREYFTTYEQIDRGNVTMANSVVCKVVGIGSIRIRTH---DGVFCTLNDVRHVPQMTKNLISLSTFDSRGFIFKGEGGVMRILKGSKVVLTALKWGTLYVLRGS 240
BLAST of mRNA_H-paniculata_contig47627.11813.1 vs. uniprot
Match: A0A5D3DBV2_CUCME (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3DBV2_CUCME) HSP 1 Score: 56.6 bits (135), Expect = 2.420e-6 Identity = 46/156 (29.49%), Postives = 77/156 (49.36%), Query Frame = 1
Query: 157 EFIGAYIASTSTTGKEEVLSVDSEGLGYRDVGEMEIWICDNGATKHMTHNSDFLFNYQECD-GHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVACIPLLSHRLLHLGKFADFGHEYRCSREGLRISLET-GRVLSAERFGSLDVMRGSPV 618
E IG Y ST TT V + ++D+ + WI D+ T HMTHN DFL N+Q+ D G + L D ++G +Q +++ + LT V +P L L+ LG+ G + E ++++ + ++ R+G L V++G+ V
Sbjct: 25 EAIGGY-DSTETTXXXXXTKVLM--VSHKDI--QDAWIMDSRCTFHMTHNLDFLINFQKSDRGTILLGDNGTCDVKGT--CSVQITTHDKMIRI-LTNVRYVPKLKCNLISLGELDRSGCTIKSENEVMKVTKGSLVKLRGTLRYG-LYVLKGTTV 171
BLAST of mRNA_H-paniculata_contig47627.11813.1 vs. uniprot
Match: A0A5A7U112_CUCME (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7U112_CUCME) HSP 1 Score: 56.2 bits (134), Expect = 6.110e-6 Identity = 37/129 (28.68%), Postives = 59/129 (45.74%), Query Frame = 1
Query: 214 SVDSEGLGYRDVGEMEIWICDNGATKHMTHNSDFLFNYQECDGH-VRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVACIPLLSHRLLHLGKFADFGHEYRCSREGLRISLETGRVLSAERFGSLD 597
SV+ + +RD+ WI D+G HMTHN DFL N+Q+ D V L D + ++G G + Q ++ M LT V +P L L+ L + + G +S L ++ ++D
Sbjct: 53 SVEVLMVSHRDI--QNAWIMDSGCMYHMTHNRDFLINFQKSDREKVLLGDNSTYDVKGTGSV--QIATHDRMIKM-LTNVRYVPELKRNLISLNEL---------DKSGTTVSGSAAMTLEQQKHHTID 167
BLAST of mRNA_H-paniculata_contig47627.11813.1 vs. uniprot
Match: A0A178U605_ARATH (ULP_PROTEASE domain-containing protein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=A0A178U605_ARATH) HSP 1 Score: 55.1 bits (131), Expect = 2.560e-5 Identity = 40/147 (27.21%), Postives = 65/147 (44.22%), Query Frame = 1
Query: 25 CGRCSKPGHDLYAC---------PQITDEDACLAEAETEIKLEEALKVDLGEDEFIGAYIASTSTTGK-EEVLSVDSEGLGYRDVGEMEIWICDNGATKHMTHNSDFLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLM 435
C C K GH C + D A L++ E + + F G Y+ + + ++S+ G+ + + D+GA+ HM NS+ L N + GHV +A+G+++PIEG+G L L F DS+ M
Sbjct: 253 CDHCKKKGHTKDKCWLLHPHLKPAKFKDSRAHLSQETHEEQSQTGSSKGETSTSF-GDYVRKSDLEALIKSIVSLKESGITFSSQTSSSSIVIDSGASHHMISNSNLLDNIEPALGHVIIANGDKVPIEGIGNLKL-FNKDSKAFFM 397
BLAST of mRNA_H-paniculata_contig47627.11813.1 vs. uniprot
Match: A0A6A4Z1R3_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z1R3_9STRA) HSP 1 Score: 53.5 bits (127), Expect = 5.400e-5 Identity = 40/144 (27.78%), Postives = 69/144 (47.92%), Query Frame = 1
Query: 148 GEDEFIGAYIASTSTTGKEEVLSVDSEGLGYRDVGEMEIWICDNGATKHMTHNSDFLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVACIPLLSHRLLHLGKFADFGHEYRCSREGLRISLETGRVLSAE 579
G DE IG+ + K ++L+++ + GE ++ I D+GA+ HMT + LF+ +EC VRLA+ R+ ++ +G ++ S V T V +P L H L+ + +G S++ G +SAE
Sbjct: 68 GSDEEIGSEV-------KIDMLNLNED---TNHNGEEQMTIIDSGASSHMTGYYNILFDIEECQRQVRLANHQRIDVDKMGKFKIKNPNGSTCVF---TNVLYVPTLHHTLVSVPALTS-KERVTVQYKGKTCSIKVGDRVSAE 197
BLAST of mRNA_H-paniculata_contig47627.11813.1 vs. uniprot
Match: Q9FWZ5_ARATH (Putative retroelement polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9FWZ5_ARATH) HSP 1 Score: 53.9 bits (128), Expect = 6.170e-5 Identity = 39/146 (26.71%), Postives = 62/146 (42.47%), Query Frame = 1
Query: 25 CGRCSKPGHDLYAC--------PQITDEDACLAEAETEIKLEEALKVDLGEDEFIGAYIASTSTTGK-EEVLSVDSEGLGYRDVGEMEIWICDNGATKHMTHNSDFLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLM 435
C C K GH C P + ET + +A G Y+ + + ++S+ G+ + + D+GA+ HM NS+ L N + GHV +A+G+++PIEG+G L L F DS+ M
Sbjct: 240 CDHCKKKGHTKDKCWLLHPHLKPAKFKDSRAHFSQETHEEQSQAGSSKGETSTSFGDYVRKSDLEALIKSIVSLKESGITFSSQTSSGSIVIDSGASHHMISNSNLLDNIEPALGHVIIANGDKVPIEGIGNLKL-FNKDSKAFFM 384
BLAST of mRNA_H-paniculata_contig47627.11813.1 vs. uniprot
Match: A0A397FGU2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FGU2_9STRA) HSP 1 Score: 52.8 bits (125), Expect = 8.260e-5 Identity = 27/77 (35.06%), Postives = 43/77 (55.84%), Query Frame = 1
Query: 250 GEMEIWICDNGATKHMTHNSDFLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVACIPLLSHRL 480
GE ++ I D+GA+ HMT + LF+ +EC HVRLA+ R+ ++ +G ++ S+ T V +P L H L
Sbjct: 193 GEEQVTIIDSGASSHMTGYHNILFDIEECQRHVRLANHQRIAVDMMGKFRIKNPNGSKCFF---TNVLYVPTLRHTL 266 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47627.11813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig47627.11813.1 >prot_H-paniculata_contig47627.11813.1 ID=prot_H-paniculata_contig47627.11813.1|Name=mRNA_H-paniculata_contig47627.11813.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=207bp RRECPNVYCGRCSKPGHDLYACPQITDEDACLAEAETEIKLEEALKVDLGback to top mRNA from alignment at H-paniculata_contig47627:295..915- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig47627.11813.1 ID=mRNA_H-paniculata_contig47627.11813.1|Name=mRNA_H-paniculata_contig47627.11813.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=621bp|location=Sequence derived from alignment at H-paniculata_contig47627:295..915- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig47627:295..915- >mRNA_H-paniculata_contig47627.11813.1 ID=mRNA_H-paniculata_contig47627.11813.1|Name=mRNA_H-paniculata_contig47627.11813.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1242bp|location=Sequence derived from alignment at H-paniculata_contig47627:295..915- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |