mRNA_H-paniculata_contig4755.11803.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4755.11803.1
Unique NamemRNA_H-paniculata_contig4755.11803.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4755.11803.1 vs. uniprot
Match: D8LBL2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBL2_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 5.230e-35
Identity = 78/160 (48.75%), Postives = 107/160 (66.88%), Query Frame = 3 
Query:  411 SPFVLPPPSWSLKDLNL------GSRPAASAIELTPEQVKKICAIAHIDLDPDG------EGSFDAASATRDVGAILRVMQSVRTGQGHGRDGAAAAESKE-EGEEEMGVDREEEGPWGGAAAWAAPLQKDIVSDGDMQKDILGSAERTEDGFFTAPRVV 851
            SP+ LPPP+WSL DLN+      G   A SA+ L+ E+V K+CA+AHI+L P+G       G  D ++  +DVGA+LR MQ++R        G     ++E EGEE       E+GPWGGA +WAAPL++D+VSDG +QK++LG+A+ TEDGFFTAP+VV
Sbjct:   76 SPYTLPPPTWSLSDLNVTDDDERGGDTARSAV-LSNEEVAKLCALAHIELAPEGADGSCSSGKLDVSAVKKDVGAMLRCMQTMRREIDDSSGGGXXRGNQEIEGEEG------EDGPWGGAVSWAAPLEEDVVSDGGIQKEVLGAAQHTEDGFFTAPKVV 228
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4755.11803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBL2_ECTSI5.230e-3548.75Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4755contigH-paniculata_contig4755:8061..11699 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_003540.1
Exons3
Model size1402
Cds size777
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4755.11803.1prot_H-paniculata_contig4755.11803.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4755 8162..11175 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930411.932113-UTR-H-paniculata_contig4755:8060..81611622930411.932113-UTR-H-paniculata_contig4755:8060..8161Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4755 8061..8161 +
1691481280.137088-UTR-H-paniculata_contig4755:8060..81611691481280.137088-UTR-H-paniculata_contig4755:8060..8161Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4755 8061..8161 +
1622930412.0179584-UTR-H-paniculata_contig4755:11175..116991622930412.0179584-UTR-H-paniculata_contig4755:11175..11699Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4755 11176..11699 +
1691481280.1784942-UTR-H-paniculata_contig4755:11175..116991691481280.1784942-UTR-H-paniculata_contig4755:11175..11699Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4755 11176..11699 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930411.9472396-CDS-H-paniculata_contig4755:8161..85661622930411.9472396-CDS-H-paniculata_contig4755:8161..8566Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4755 8162..8566 +
1691481280.146959-CDS-H-paniculata_contig4755:8161..85661691481280.146959-CDS-H-paniculata_contig4755:8161..8566Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4755 8162..8566 +
1622930411.9663815-CDS-H-paniculata_contig4755:9408..96631622930411.9663815-CDS-H-paniculata_contig4755:9408..9663Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4755 9409..9663 +
1691481280.156408-CDS-H-paniculata_contig4755:9408..96631691481280.156408-CDS-H-paniculata_contig4755:9408..9663Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4755 9409..9663 +
1622930411.991614-CDS-H-paniculata_contig4755:11058..111751622930411.991614-CDS-H-paniculata_contig4755:11058..11175Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4755 11059..11175 +
1691481280.1689851-CDS-H-paniculata_contig4755:11058..111751691481280.1689851-CDS-H-paniculata_contig4755:11058..11175Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4755 11059..11175 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4755.11803.1

>prot_H-paniculata_contig4755.11803.1 ID=prot_H-paniculata_contig4755.11803.1|Name=mRNA_H-paniculata_contig4755.11803.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=259bp
MILRNAGLPWCSNRLASRVPCGTTVVASSLAIVTSSLGTAAAGGTRRLFP
TPTPITKPSPPRRFSSDVGNAAVGALENAHEEQKQDCAIPRYPAVDFVDA
DTPSPFVLPPPSWSLKDLNLGSRPAASAIELTPEQVKKICAIAHIDLDPD
GEGSFDAASATRDVGAILRVMQSVRTGQGHGRDGAAAAESKEEGEEEMGV
DREEEGPWGGAAAWAAPLQKDIVSDGDMQKDILGSAERTEDGFFTAPRVV
GGGEDGQQ*
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mRNA from alignment at H-paniculata_contig4755:8061..11699+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4755.11803.1 ID=mRNA_H-paniculata_contig4755.11803.1|Name=mRNA_H-paniculata_contig4755.11803.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3639bp|location=Sequence derived from alignment at H-paniculata_contig4755:8061..11699+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTTTGACGTGCAGACAGACTACGCTGTTGTTGCAAAGTAGGTTTATTT
CAGTGCACGCAGCATCCAGCTGTCCATTGCTGTAGTTTCAACGCAAGCGC
CATGATATTACGAAATGCAGGCTTACCTTGGTGCAGCAATCGACTGGCCT
CGCGCGTACCATGCGGCACAACAGTAGTAGCGTCTTCCCTGGCAATAGTA
ACGTCTTCCTTGGGAACAGCGGCAGCTGGAGGCACCAGACGACTCTTCCC
CACACCCACCCCCATCACCAAGCCCAGTCCACCACGCCGTTTCTCGTCAG
ATGTAGGCAATGCTGCTGTAGGGGCGCTAGAAAATGCTCATGAAGAGCAA
AAGCAGGACTGTGCAATCCCGAGGTATCCTGCGGTCGATTTCGTGGATGC
TGATACTCCGTCGCCGTTCGTCCTTCCGCCGCCATCTTGGTCACTCAAGG
ACCTCAACCTGGGTTCACGACCGGCAGCCAGCGCAATTGAGCTGACTCCC
GAGCAGGTTGGTGCTTTTTTTTTCGTGTGCGGTACGCCATGGAACATTGC
GGTGGAGAGAGCAGTCTGCTTTGTCAAGATATACGATCCAAACACGTAGT
CGTCACTACAACACAAGGAGTCACCAAACCTCTCGTGTGCTGCGTCCTGT
TATGCCACTGGTGCAAGGAATCAAGCAACAACGCTTTGCTCTAGTGAATT
GCACGCTAAGTGCAAAGGTGTCGAGTGCAGCAAACGATGCGCTCAGGAAG
GAGAATATCGTCATGATGGTTCTTGTGTGAGCACTGCGTTGGCGGGTGGA
GCACGCCACACGGCACAGTACATGTTTTCAAAAATCATGACTGCGGGGCT
TTAACCGCATCTTCTAATTGGCCAATGGTCGACTGAGCTCAACTGGTTTT
CGAGGGGAATGCAAAAGCAGCGAATTGTTGCACCATGATTCGAGATGCTG
GAAAGACAGTCCTACACTATAGATCAACAGATAAAGTGGACACTAGCAAC
TCTACGTGCTGAGTCTTTCGTCACACCAAGAAGTATTAAACTGGTGGCCT
ACCATTCCAATCTCCGCCATACCGATCTTGCGTACTTCGCCCAACGGTAG
CAACCAAAACACCCCACTGTTTTTCTTGTACCCGCTGTGAGCACCCCGCG
CCACGATAAAAACAACTACTTCATTAACGTGCTAAATAAGTTCCCCCTTC
CCGATGTTATCTCGCGCCGCTGCTCTACTCGCCGCTATTGTACATGGTTA
GTTCATTCTGCCAGGCGTTTTCACCACCCCCCCGTCCCCCCGGGTGCATG
CTACCACTACCACATACACACCGCCACGCGGCGCGGAAACTTGTACAGGT
GAAAAAAATATGCGCAATTGCGCATATCGACTTGGATCCCGACGGCGAAG
GGAGCTTCGACGCAGCCTCTGCGACGCGGGACGTGGGCGCCATTTTGAGG
GTCATGCAGTCCGTACGAACAGGGCAAGGACACGGGCGAGATGGGGCGGC
GGCGGCAGAATCGAAGGAGGAGGGGGAGGAGGAGATGGGAGTTGACAGAG
AAGAAGAAGGGCCTTGGGGAGGTGCGGCTGCGTGGGCAGCACCTTTGCAA
AAGGTGTGGCTCGACTACAATTATTACATGTGTGTTTCACCGTTTGCCTC
CCCTCTCCATCTGACTGACGGTGATACATCCATTGGGATCTTGCCGGCAG
GAGCATTCGAATGTTTCCGCTCTTTGAGTGTGTATGTACATCGCTCTCTT
TCTGTATATACACTCAATTTGAACGCAACACGTGGTTTTTAACTACAACC
AATCTAGGTTTTTGATATACAAGAGGTCGGAATGAAATTGCGCTAAAGGG
GAGACTGTAGCTATTCAAAATCAATCATGTTGGGGTAGCGGTACTCTCCT
TTTCTTGGGTTGAAAAGAGTATGGCAAACGACGATGCATGTAGCTTTAAC
TTAGATCTATATGCATTACCATTTCAATTACTCTAATCCACGCCGGCTAA
TGAAAATAGGATATCCCTAATATCGAGGTGCCAGTTTCCGCGGGTCTCCC
TCGAGTCTAACCCTGAATCCCCGCAAGTACTGTCTGACGGGGTTTGCCGT
TTTTTGAAACTCGATTGTTGAGCATGCAAACATTTTCATCGCAAGGGGTG
GTCGCATAGATGCAACGTGCGGTAGTGATGCTTTTGTTTTCTAAGCAGTT
CAAGCGTTGATGTAGACCCTGAGTGAACGAATCGCCGCTAAGGACGTGAA
AAATAAGGCGTTCTCTGTTTCGCTCTTCCTTGAGAGGCGAAATTTTGCCA
GATGTTTTTGTTGGTAAGGCACACACCTTTATTGTATTGCGACTCCGGGC
TGGAGCACACCGTCAGCACAGCACATTGACTGTGCTTCGACATAGTACTG
CTGTGCTGCGAGGGCCCATTGATTGCGGCAGGGTGCACGACGTGCTGCAC
TAATGCACCCATCAAGTTTACTGTATCGCAGAGCCAAAGGTAGCCTGGCC
AAGCTGCAGGAGGTGGACAAAATCGCTAGAGCACCTATTCGCACCGCTGA
GCAAAACTTGTAACACGTTTTTCATGCGAATTAGGACACGTAAAAGGTGA
AATACTAGCAACTGGTGTGCCTATTCGTGTAAGCTCGTGTCCGGAATTTT
GAAACACCGGAATCGAGTAAAGGTTGAACACGGCTTGTCCATAGTTAAGG
GTAGCGTGTCGACTTTGGCCTTCTTCTAGATAGGCTGTACAAGTTCAGGG
CAAAGTCGACGACTTTCAAAGGAATGATCCGTTCGCCTCAAAAGGGTACA
TTCACCCCCCCTCCATATATCCTTTGGTCCCATCTCATGAGTGCTCACGA
TCAACTGAGTTTTTCTTTTTCTCTGATCAACGACATATAATGCCGTCCTT
GACGTACCACCCGTGGGCATTTTCTACGGCAAGCGTTGTTTGTTTTGTTA
TTCCCCAACCTCCCACGACTCGCGTACGTTCGTTTTCTACCCCCTCAGGA
CATCGTCTCCGACGGAGATATGCAGAAGGATATCTTAGGCTCGGCTGAGC
GGACAGAAGACGGGTTCTTCACTGCGCCGAGAGTAGTCGGTGGGGGTGAA
GATGGGCAACAATAGCGCTTGTCAACAGCCTAGAACAGTTTTGTAGATCA
GCGAGACGTTGCGTGCCCCGTGTCTTGGGAAGCGTGATCGATGAAAGGTC
ATAGAATGCAACTTGGGTAGGAGCTGTATGTAAATGTGGCAAATTCGCCA
TAGTTGAAAGTTTGATTTATTTGTGCTCTAACAGTGTATTGTTCACGTCA
AGCTCTTTTAACACTGTGCGGTTGCATGTTTTCCTAACATGGTTTGTTTC
GCCGTAAGGTGGTTGGTTAGTTGTATCGAGTGTGATTCGGCGTGATGGTA
GGTAGTTGTTCCCTTTTTTTGTCGGTTCTGGGAAACGCAAGTTTATTTCT
CGTGAATGAAGAGGAGGGCGCAACCTCAAACTCGGCCGATGAAGAAGCTG
TTCGCTCATGCGTGTCAGAAGCTTTTTTTCCATCATGGGAACACTTTTTT
CATCAACTACAGAACAACAGTAGGGTATTCCATGCGTGCTTGTGCTGACC
CCTGCCTAAAACATTTATCTTAACGAAGATGAATCTATG
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Coding sequence (CDS) from alignment at H-paniculata_contig4755:8061..11699+

>mRNA_H-paniculata_contig4755.11803.1 ID=mRNA_H-paniculata_contig4755.11803.1|Name=mRNA_H-paniculata_contig4755.11803.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1554bp|location=Sequence derived from alignment at H-paniculata_contig4755:8061..11699+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATATTACGAAATGCAGGCTTACCTTGGTGCAGCAATCGACTGGCCTC
GCGCGTACCATGCGGCACAACAGTAGTAGCGTCTTCCCTGGCAATAGTAA
CGTCTTCCTTGGGAACAGCGGCAGCTGGAGGCACCAGACGACTCTTCCCC
ACACCCACCCCCATCACCAAGCCCAGTCCACCACGCCGTTTCTCGTCAGA
TGTAGGCAATGCTGCTGTAGGGGCGCTAGAAAATGCTCATGAAGAGCAAA
AGCAGGACTGTGCAATCCCGAGGTATCCTGCGGTCGATTTCGTGGATGCT
GATACTCCGTCGCCGTTCGTCCTTCCGCCGCCATCTTGGTCACTCAAGGA
CCTCAACCTGGGTTCACGACCGGCAGCCAGCGCAATTGAGCTGACTCCCG
AGCAGATGATATTACGAAATGCAGGCTTACCTTGGTGCAGCAATCGACTG
GCCTCGCGCGTACCATGCGGCACAACAGTAGTAGCGTCTTCCCTGGCAAT
AGTAACGTCTTCCTTGGGAACAGCGGCAGCTGGAGGCACCAGACGACTCT
TCCCCACACCCACCCCCATCACCAAGCCCAGTCCACCACGCCGTTTCTCG
TCAGATGTAGGCAATGCTGCTGTAGGGGCGCTAGAAAATGCTCATGAAGA
GCAAAAGCAGGACTGTGCAATCCCGAGGTATCCTGCGGTCGATTTCGTGG
ATGCTGATACTCCGTCGCCGTTCGTCCTTCCGCCGCCATCTTGGTCACTC
AAGGACCTCAACCTGGGTTCACGACCGGCAGCCAGCGCAATTGAGCTGAC
TCCCGAGCAGGTGAAAAAAATATGCGCAATTGCGCATATCGACTTGGATC
CCGACGGCGAAGGGAGCTTCGACGCAGCCTCTGCGACGCGGGACGTGGGC
GCCATTTTGAGGGTCATGCAGTCCGTACGAACAGGGCAAGGACACGGGCG
AGATGGGGCGGCGGCGGCAGAATCGAAGGAGGAGGGGGAGGAGGAGATGG
GAGTTGACAGAGAAGAAGAAGGGCCTTGGGGAGGTGCGGCTGCGTGGGCA
GCACCTTTGCAAAAGGTGAAAAAAATATGCGCAATTGCGCATATCGACTT
GGATCCCGACGGCGAAGGGAGCTTCGACGCAGCCTCTGCGACGCGGGACG
TGGGCGCCATTTTGAGGGTCATGCAGTCCGTACGAACAGGGCAAGGACAC
GGGCGAGATGGGGCGGCGGCGGCAGAATCGAAGGAGGAGGGGGAGGAGGA
GATGGGAGTTGACAGAGAAGAAGAAGGGCCTTGGGGAGGTGCGGCTGCGT
GGGCAGCACCTTTGCAAAAGGACATCGTCTCCGACGGAGATATGCAGAAG
GATATCTTAGGCTCGGCTGAGCGGACAGAAGACGGGTTCTTCACTGCGCC
GAGAGTAGTCGGTGGGGGTGAAGATGGGCAACAATAGGACATCGTCTCCG
ACGGAGATATGCAGAAGGATATCTTAGGCTCGGCTGAGCGGACAGAAGAC
GGGTTCTTCACTGCGCCGAGAGTAGTCGGTGGGGGTGAAGATGGGCAACA
ATAG
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