prot_H-paniculata_contig47281.11752.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig47281.11752.1
Unique Nameprot_H-paniculata_contig47281.11752.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length81
Homology
BLAST of mRNA_H-paniculata_contig47281.11752.1 vs. uniprot
Match: A0A2I6U1M4_SACJA (Tic20-like protein n=15 Tax=Saccharina japonica TaxID=88149 RepID=A0A2I6U1M4_SACJA)

HSP 1 Score: 116 bits (290), Expect = 3.990e-29
Identity = 59/77 (76.62%), Postives = 64/77 (83.12%), Query Frame = 0
Query:    1 DKALSALSYLLPLADGLAYGGHLFASHPEQMAVLQPLVAVLFALRSLPFATLVGFFGLSTLSNNPQVNKLVRFNMKQ 77
            DKALSAL YLLPL DG+++ GHLF + PEQ A  QPL AVL ALRSLPFATLVGFF LS LS NPQVNKLVRFNM+Q
Sbjct:  255 DKALSALPYLLPLVDGISFAGHLFGAFPEQTAWAQPLAAVLLALRSLPFATLVGFFSLSALSGNPQVNKLVRFNMQQ 331          
BLAST of mRNA_H-paniculata_contig47281.11752.1 vs. uniprot
Match: A0A6H5KVD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVD7_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 2.860e-28
Identity = 54/77 (70.13%), Postives = 64/77 (83.12%), Query Frame = 0
Query:    1 DKALSALSYLLPLADGLAYGGHLFASHPEQMAVLQPLVAVLFALRSLPFATLVGFFGLSTLSNNPQVNKLVRFNMKQ 77
            DKALSAL Y+LPLADG+ +  HLF + PEQ A  +PLVAVL ALRS+PFATL+GFF LS  S+NPQ+NKLVRFNM+Q
Sbjct:   35 DKALSALPYVLPLADGVVFAAHLFGAFPEQTAWAEPLVAVLLALRSVPFATLIGFFSLSVGSSNPQINKLVRFNMQQ 111          
BLAST of mRNA_H-paniculata_contig47281.11752.1 vs. uniprot
Match: A0A6H5KUU9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU9_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.870e-27
Identity = 55/77 (71.43%), Postives = 63/77 (81.82%), Query Frame = 0
Query:    1 DKALSALSYLLPLADGLAYGGHLFASHPEQMAVLQPLVAVLFALRSLPFATLVGFFGLSTLSNNPQVNKLVRFNMKQ 77
            DKALSAL Y+LPLADG+ +  HLF + PEQ A  QPL AVL ALRS+PFATLVGFF LS  S+NPQ+NKLVRFNM+Q
Sbjct:  117 DKALSALPYVLPLADGVVFAAHLFGAFPEQTAWAQPLAAVLLALRSVPFATLVGFFSLSVGSSNPQINKLVRFNMQQ 193          
BLAST of mRNA_H-paniculata_contig47281.11752.1 vs. uniprot
Match: D8LS19_ECTSI (EF-hand domain-containing protein n=7 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS19_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 1.560e-26
Identity = 54/77 (70.13%), Postives = 63/77 (81.82%), Query Frame = 0
Query:    1 DKALSALSYLLPLADGLAYGGHLFASHPEQMAVLQPLVAVLFALRSLPFATLVGFFGLSTLSNNPQVNKLVRFNMKQ 77
            DKALSAL Y+LPLADG+ +  HLF + PEQ A  QPL AVL ALRS+PFATL+GFF LS  S+NPQ+NKLVRFNM+Q
Sbjct:  254 DKALSALPYVLPLADGVVFAAHLFGAFPEQTAWAQPLAAVLLALRSVPFATLIGFFSLSIWSSNPQINKLVRFNMQQ 330          
BLAST of mRNA_H-paniculata_contig47281.11752.1 vs. uniprot
Match: D7FRG5_ECTSI (EF-hand domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG5_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 3.590e-26
Identity = 55/77 (71.43%), Postives = 62/77 (80.52%), Query Frame = 0
Query:    1 DKALSALSYLLPLADGLAYGGHLFASHPEQMAVLQPLVAVLFALRSLPFATLVGFFGLSTLSNNPQVNKLVRFNMKQ 77
            DKALSAL YLLPL DG+ +  HLF + PEQ A  QPL AVL ALRSLPFATL+GFF LS  S+NP+VNKLVRFNM+Q
Sbjct:  254 DKALSALPYLLPLVDGILFAAHLFGAFPEQTAWAQPLAAVLLALRSLPFATLIGFFSLSIGSSNPRVNKLVRFNMQQ 330          
BLAST of mRNA_H-paniculata_contig47281.11752.1 vs. uniprot
Match: D8LS20_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS20_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 7.110e-25
Identity = 53/77 (68.83%), Postives = 62/77 (80.52%), Query Frame = 0
Query:    1 DKALSALSYLLPLADGLAYGGHLFASHPEQMAVLQPLVAVLFALRSLPFATLVGFFGLSTLSNNPQVNKLVRFNMKQ 77
            DKALSAL Y+LPLADG+ +  HLF +  EQ A  QPL AVL ALRS+PFATL+GFF LS  S+NPQ+NKLVRFNM+Q
Sbjct:  254 DKALSALPYVLPLADGVVFAAHLFGAFLEQTAWAQPLAAVLLALRSVPFATLIGFFSLSIGSSNPQINKLVRFNMQQ 330          
BLAST of mRNA_H-paniculata_contig47281.11752.1 vs. uniprot
Match: A0A6H5JY95_9PHAE (EF-hand domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY95_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 5.250e-22
Identity = 45/77 (58.44%), Postives = 62/77 (80.52%), Query Frame = 0
Query:    1 DKALSALSYLLPLADGLAYGGHLFASHPEQMAVLQPLVAVLFALRSLPFATLVGFFGLSTLSNNPQVNKLVRFNMKQ 77
            +KAL AL Y+LPL+DG+ Y  H++++ P+QMA  +PLVA+L A+ +LPFATLV FFG+S LS+N  +NKL+RFNM Q
Sbjct:  250 EKALCALPYILPLSDGIVYAQHIYSTFPQQMAWSEPLVAILIAVNNLPFATLVAFFGMSILSSNQNINKLLRFNMLQ 326          
BLAST of mRNA_H-paniculata_contig47281.11752.1 vs. uniprot
Match: D8LTM8_ECTSI (TIC 20 related, plastid import n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTM8_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 7.870e-19
Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = 0
Query:    1 DKALSALSYLLPLADGLAYGGHLFASHPEQMAVLQPLVAVLFALRSLPFATLVGFFGLSTLSNNPQVNKLVRFNMKQVRVV 81
            DK LS L Y LPL D L +G H+F + P Q++ L+PLVA+L   RSLPF+ L+ FFGL   +  P+VNKLVRFN++Q  ++
Sbjct:  269 DKLLSVLPYTLPLMDSLVFGAHIFQTFPTQLSFLEPLVAILLIYRSLPFSGLILFFGLQWFAAKPEVNKLVRFNLRQAVIL 349          
BLAST of mRNA_H-paniculata_contig47281.11752.1 vs. uniprot
Match: A0A6H5KKK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK9_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 4.010e-16
Identity = 40/59 (67.80%), Postives = 43/59 (72.88%), Query Frame = 0
Query:    1 DKALSALSYLLPLADGLAYGGHLFASHPEQMAVLQPLVAVLFALRSLPFATLVGFFGLS 59
            D ALSAL YLLPLADG+ +  HLF   PEQ A  QPL AVL  LRSL FATL+GFF LS
Sbjct:  108 DNALSALPYLLPLADGIVFAAHLFGVFPEQTAWAQPLAAVLLTLRSLSFATLIGFFSLS 166          
BLAST of mRNA_H-paniculata_contig47281.11752.1 vs. uniprot
Match: A0A7S4ANG9_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ANG9_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 5.570e-12
Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 0
Query:    1 DKALSALSYLLPLADGLAYGGHLFASHPEQMAVLQPLVAVLF-ALRSLPFATLVGFFGLSTLSNNPQVNKLVRFNMKQ 77
            DK +S L YL PL D L +G ++   +PE   V   ++A+LF A +++PF+  + F  L+TLSNNP +NKLVRFNM+Q
Sbjct:  222 DKIVSVLPYLFPLLDSLQFGRYVILDNPENPFVF--VLALLFSAYKTIPFSGFIAFIALNTLSNNPGLNKLVRFNMQQ 297          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47281.11752.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2I6U1M4_SACJA3.990e-2976.62Tic20-like protein n=15 Tax=Saccharina japonica Ta... [more]
A0A6H5KVD7_9PHAE2.860e-2870.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUU9_9PHAE1.870e-2771.43Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D8LS19_ECTSI1.560e-2670.13EF-hand domain-containing protein n=7 Tax=Ectocarp... [more]
D7FRG5_ECTSI3.590e-2671.43EF-hand domain-containing protein n=2 Tax=Ectocarp... [more]
D8LS20_ECTSI7.110e-2568.83EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5JY95_9PHAE5.250e-2258.44EF-hand domain-containing protein n=2 Tax=Ectocarp... [more]
D8LTM8_ECTSI7.870e-1951.85TIC 20 related, plastid import n=2 Tax=Ectocarpus ... [more]
A0A6H5KKK9_9PHAE4.010e-1667.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4ANG9_9STRA5.570e-1247.44Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33510:SF5PROTEIN TIC 20-II, CHLOROPLASTICcoord: 1..77
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..35
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 36..58
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 59..81
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..20
NoneNo IPR availableTMHMMTMhelixcoord: 7..26
NoneNo IPR availableTMHMMTMhelixcoord: 41..63
IPR005691Chloroplast protein import component Tic20PANTHERPTHR33510FAMILY NOT NAMEDcoord: 1..77

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig47281contigH-paniculata_contig47281:1043..1285 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig47281.11752.1mRNA_H-paniculata_contig47281.11752.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig47281 1043..1285 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig47281.11752.1 ID=prot_H-paniculata_contig47281.11752.1|Name=mRNA_H-paniculata_contig47281.11752.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=81bp
DKALSALSYLLPLADGLAYGGHLFASHPEQMAVLQPLVAVLFALRSLPFA
TLVGFFGLSTLSNNPQVNKLVRFNMKQVRVV
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005691Tic20