mRNA_H-paniculata_contig4720.11740.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4720.11740.1
Unique NamemRNA_H-paniculata_contig4720.11740.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4720.11740.1 vs. uniprot
Match: D7FU86_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU86_ECTSI)

HSP 1 Score: 288 bits (736), Expect = 7.060e-90
Identity = 140/244 (57.38%), Postives = 173/244 (70.90%), Query Frame = 1
Query:    1 GQYVALKIMRRVQQEDPRMPNASRRLQDEITAMKLCGDHQHTVGLLEHAFPAEYPKKNGRITKVNLLVLELCPNGELFDLLYRGGPVPTFVCKEYFRQLMSGIKYCHDKEVWHRDLKPENLLLDENFGLKIADFGFSASGRNNGLCNSIVGSKTYMAPEVLSRSDTHK-----PYHGGQADVWSAGVILFTMLSGHPPMEIATQTDWWFRALKLRRHDLFWESHERNAKERFMDVAKDLVNKML 717
            G+ VALK+M ++   DP     S RL DE+ AM+ CG H+HTV L+   F A YP++NG +T   +LVLELC  GELF+LL + G  P  VCKEYFRQLM G+K+CHD  V HRDLKPENLLLD +F LKIADFGF+A GR   +C+SIVGS+TYMAPEVL+   ++       Y   +ADVWS+GVILFTML+GHPPME A ++DWWFRALKL R DLFW+SH+ N      + AK L+  ML
Sbjct:  177 GETVALKVMDKLDPRDPSYYRRSSRLNDEVLAMQRCGSHEHTVSLIRAMFDATYPRRNGDLTNAPILVLELCEKGELFELLSQPGGFPPIVCKEYFRQLMCGVKFCHDNGVCHRDLKPENLLLDSDFTLKIADFGFAALGRERMICSSIVGSRTYMAPEVLNLGQSYAYGDDAAYDATKADVWSSGVILFTMLAGHPPMEKANESDWWFRALKLGRQDLFWQSHQ-NTAPLLPEDAKHLIQAML 419          
BLAST of mRNA_H-paniculata_contig4720.11740.1 vs. uniprot
Match: A0A6H5KK56_9PHAE (Protein kinase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK56_9PHAE)

HSP 1 Score: 288 bits (737), Expect = 8.940e-90
Identity = 141/244 (57.79%), Postives = 171/244 (70.08%), Query Frame = 1
Query:    1 GQYVALKIMRRVQQEDPRMPNASRRLQDEITAMKLCGDHQHTVGLLEHAFPAEYPKKNGRITKVNLLVLELCPNGELFDLLYRGGPVPTFVCKEYFRQLMSGIKYCHDKEVWHRDLKPENLLLDENFGLKIADFGFSASGRNNGLCNSIVGSKTYMAPEVLSRSDTHK-----PYHGGQADVWSAGVILFTMLSGHPPMEIATQTDWWFRALKLRRHDLFWESHERNAKERFMDVAKDLVNKML 717
            G+ VALK+M R+   DP     S RL DE+ AM+ CG H+HTV L+E  F   YP++NG +T   +LVLELC  GELF+LL + G  P  VCKEYFRQLM G+K+CHD  V HRDLKPENLLLD +F LKIADFGF+A GR    C+SIVGS+TYMAPEVL    ++       Y   +ADVWS+GVILFTML+GHPPME A ++DWWFRALKL R DLFW+SH+  A     + AK L+  ML
Sbjct:  253 GKMVALKVMDRLDPRDPSFHRRSSRLNDEVHAMRRCGSHEHTVSLIEAMFDTTYPRRNGELTNAPILVLELCEKGELFELLSQPGGFPPVVCKEYFRQLMCGVKFCHDNGVCHRDLKPENLLLDADFTLKIADFGFAALGRERMNCSSIVGSRTYMAPEVLKLGQSYAYGDDAAYDATKADVWSSGVILFTMLAGHPPMEKANESDWWFRALKLSRQDLFWQSHQNTAPP-LPEDAKHLIQAML 495          
BLAST of mRNA_H-paniculata_contig4720.11740.1 vs. uniprot
Match: A0A7S2WUS7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUS7_9STRA)

HSP 1 Score: 209 bits (532), Expect = 1.050e-61
Identity = 110/238 (46.22%), Postives = 157/238 (65.97%), Query Frame = 1
Query:    1 GQYVALKIMRRVQQEDPRMPNASRRLQDEITAMKLCGDHQHTVGLLEHAFPAEYPKKNGRITKVNLLVLELCPNGELFDLLYRGGPVPTFVCKEYFRQLMSGIKYCHDKEVWHRDLKPENLLLDENFGLKIADFGFSASGRNNGLCNSIVGSKTYMAPEVLSRSDTHKPYHGGQADVWSAGVILFTMLSGHPPMEIATQTDWWFRALKLRRHDLFWESHERNAKERFMDVAKDLVNKM 714
            G+ VALK++ R +      P  +  L+ EI AM+    H +T+ L    + A+YPKK G   +V LLVLEL   GELFD L   GP+   V + YFRQL+S ++ CH + V+HRDLKPENLLLD +F LK+ADFG +A   ++ LC +  G+++YMAPEV+SR    +PY G +AD+WSAGV+LF ML+G+PP   A   DWWF A++  R+D FW +H R+A + F  +A++ +N++
Sbjct:   14 GEQVALKLIDRTKLT----PRQTEMLEREIQAMQAV-QHPNTLLLRHVEWVAQYPKKRGGFREVVLLVLELGTGGELFDYLMYTGPLGEQVARSYFRQLLSALEVCHSQGVYHRDLKPENLLLDGSFQLKLADFGLAAINCDDHLCATECGTRSYMAPEVMSR----QPYDGAKADIWSAGVVLFIMLAGNPPFAQAGGNDWWFTAIRHNRYDKFWMAHLRSAPD-FPKLAQEFLNRI 241          
BLAST of mRNA_H-paniculata_contig4720.11740.1 vs. uniprot
Match: A0A1V9Z6T2_9STRA (CBL-interacting serine/threonine-protein kinase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z6T2_9STRA)

HSP 1 Score: 207 bits (526), Expect = 1.150e-60
Identity = 110/238 (46.22%), Postives = 150/238 (63.03%), Query Frame = 1
Query:    1 GQYVALKIMRRVQQEDPRMPNASRRLQDEITAMKLCGDHQHTVGLLEHAFPAEYPKKNGRITKVNLLVLELCPNGELFDLLYRGGPVPTFVCKEYFRQLMSGIKYCHDKEVWHRDLKPENLLLDENFGLKIADFGFSASGRNNGLCNSIVGSKTYMAPEVLSRSDTHKPYHGGQADVWSAGVILFTMLSGHPPMEIATQTDWWFRALKLRRHDLFWESHERNAKERFMDVAKDLVNKM 714
            G+ VALK+++     D     A   L  EI +MK    H + + LL      EYPKK G + KV L+VLEL   GELFD +   G     + + YFRQL+SG+  CH K+V+HRD+KPENLLLD+N+ L+IADFG SA G  +    +  G+++YM+PEVLS S    PY G  ADVWSAGV+LF +L+G PP +IAT+ DWWFRA  ++++  FW +H R A   F  +A DL+ ++
Sbjct:   31 GEAVALKLIK----ADTLSNKACHNLFREIESMKRV-QHPNVLRLLAVKKDVEYPKKKGGVMKVVLVVLELASGGELFDFMMYTGSFSEEIARTYFRQLVSGLHECHSKQVFHRDIKPENLLLDQNYILRIADFGLSALGDQSTELMTQCGTRSYMSPEVLSGS----PYEGAPADVWSAGVVLFILLAGFPPFQIATRQDWWFRACAMKQYHAFWAAHSRTAV--FSPMAMDLLTRI 257          
BLAST of mRNA_H-paniculata_contig4720.11740.1 vs. uniprot
Match: D7G6D0_ECTSI (Serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6D0_ECTSI)

HSP 1 Score: 205 bits (521), Expect = 1.440e-59
Identity = 106/239 (44.35%), Postives = 155/239 (64.85%), Query Frame = 1
Query:    1 GQYVALKIMRRVQQEDPRMPNASRRLQDEITAMKLCGDHQHTVGLLEHAFPAEYPKKNGRITKVNLLVLELCPNGELFDLLYRGGPVPTFVCKEYFRQLMSGIKYCHDKEVWHRDLKPENLLLDENFGLKIADFGFSASGRN-NGLCNSIVGSKTYMAPEVLSRSDTHKPYHGGQADVWSAGVILFTMLSGHPPMEIATQTDWWFRALKLRRHDLFWESHERNAKERFMDVAKDLVNKM 714
            G+ VA+KIM     +D     A+++L+ EIT+MK   DH + + L +      Y KKNG   +V +LVLEL   GELFD +   G  P  + + YF Q++S ++ CH   + HRD+KPEN+LLD NF L++ADFG S+   + NG+C +  G+++YMAPEVL++    +PY G QAD+WSAGV+LF ML+G+PP ++A  TDWWFRA+   RHD FW +H R   + F  +A+  +N++
Sbjct:   40 GETVAVKIM----YKDNMSARAAQQLRREITSMKAL-DHPNVLRLKDVHESLTYVKKNGLEKEVVILVLELAVGGELFDFMMYTGAFPEVIARTYFCQMLSALEMCHSTGIAHRDIKPENILLDNNFQLRMADFGLSSIMEDENGVCYTECGTRSYMAPEVLAK----QPYDGAQADLWSAGVVLFIMLAGNPPFQMAVSTDWWFRAVSSGRHDRFWAAHLRGCPD-FPPLAQAFLNRI 268          
BLAST of mRNA_H-paniculata_contig4720.11740.1 vs. uniprot
Match: A0A6A7G7B6_9CRUS (CBL-interacting serine/threonine-protein kinase n=2 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G7B6_9CRUS)

HSP 1 Score: 200 bits (509), Expect = 5.140e-58
Identity = 105/240 (43.75%), Postives = 153/240 (63.75%), Query Frame = 1
Query:    1 GQYVALKIMRRVQQEDPRMPNASRRLQDEITAMKLCGDHQHTVGLLEHAFPAEYPKKNGRITKVNLLVLELCPNGELFDLLYRGGPVPTFVCKEYFRQLMSGIKYCHDKEVWHRDLKPENLLLDENFGLKIADFGFS-ASGRNNGLCNSIVGSKTYMAPEVLSRSDTHKPYHGGQADVWSAGVILFTMLSGHPPMEIATQTDWWFRALKLRRHDLFWESHERNAKERFMDVAKDLVNKML 717
            GQ  ALKI+  ++        A R+++ EI AM     H++ + LL+++F A+YPK +G +  V L+VLEL   GE FD L   G  P  + +E+FRQL+ G++ CH   V HRD+KPENLLLD+ F LKIADFGFS     +N    +  G+K YMAPE+L  +     ++  + D+++ GV+LF ML+G PP +IAT++DWWF  L + RH LFW++H R A+  F + AKDL+ ++L
Sbjct:   30 GQKAALKIL--IKNRFILQDTALRQVKAEIQAMSKI-QHENVIRLLDYSFDAQYPKSDGTVVDVMLVVLELASGGEFFDFLSYTGRFPEPISREFFRQLIGGLEACHLNGVAHRDVKPENLLLDDQFRLKIADFGFSKVLSSDNDTMATECGTKGYMAPEILMHN-----HYTMKTDIFACGVVLFIMLAGFPPFQIATRSDWWFHKLLVGRHGLFWQAHSRTAQ--FSETAKDLIQRLL 259          
BLAST of mRNA_H-paniculata_contig4720.11740.1 vs. uniprot
Match: A0A067D094_SAPPC (CAMK protein kinase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D094_SAPPC)

HSP 1 Score: 197 bits (500), Expect = 8.880e-57
Identity = 105/238 (44.12%), Postives = 146/238 (61.34%), Query Frame = 1
Query:    1 GQYVALKIMRRVQQEDPRMPNASRRLQDEITAMKLCGDHQHTVGLLEHAFPAEYPKKNGRITKVNLLVLELCPNGELFDLLYRGGPVPTFVCKEYFRQLMSGIKYCHDKEVWHRDLKPENLLLDENFGLKIADFGFSASGRNNGLCNSIVGSKTYMAPEVLSRSDTHKPYHGGQADVWSAGVILFTMLSGHPPMEIATQTDWWFRALKLRRHDLFWESHERNAKERFMDVAKDLVNKM 714
            G+ VALK+++     +    N  R    EI AMK    H + + LL      EYPKK G   KV L+VLEL   GELFD +   G     + + YFRQL++G+  CH   V+HRD+KPENLL+D ++ L+IADFG SA G  +    +  G+++YM+PEVLS +    PY G  ADVWSAGV+LF +L+G PP +IAT+ DWWFRA  ++++  FW +H R A   F  +A DL+ ++
Sbjct:   31 GEAVALKLIKAESLSNKACHNLFR----EIEAMKRV-QHPNVLRLLAVKKDVEYPKKKGGSQKVVLVVLELASGGELFDFMMYTGSFSEEIARTYFRQLVAGLHACHSNNVFHRDIKPENLLMDHSYLLRIADFGLSALGDQSSELLTQCGTRSYMSPEVLSGN----PYEGAPADVWSAGVVLFILLAGFPPFQIATRQDWWFRACAMKQYQAFWAAHARTAV--FSPMAMDLLTRI 257          
BLAST of mRNA_H-paniculata_contig4720.11740.1 vs. uniprot
Match: A0A418AN82_9STRA (Protein kinase domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AN82_9STRA)

HSP 1 Score: 197 bits (501), Expect = 1.180e-56
Identity = 105/241 (43.57%), Postives = 151/241 (62.66%), Query Frame = 1
Query:    1 GQYVALKIMRRVQQEDPRMPNASRRLQDEITAMKLCGDHQHTVGLLEHAFPAEYPKKNGRITKVNLLVLELCPNGELFDLLYRGGPVPTFVCKEYFRQLMSGIKYCHDKEVWHRDLKPENLLLDENFGLKIADFGFSASGRNNGLCNSIV---GSKTYMAPEVLSRSDTHKPYHGGQADVWSAGVILFTMLSGHPPMEIATQTDWWFRALKLRRHDLFWESHERNAKERFMDVAKDLVNKM 714
             ++VALK+++  +     + N  R    EI AMKL   H + + LL  A   EYPKK G   KV L+VLEL   GELFD +   G     + + YFRQL+SG+  CH + V+HRD+KPENLLLD++F L+IADFG SA   +  + + +    G++ YM+PE+++ +    PY G  ADVWSAGV+LF +L+G PP +IAT+ DWWFRA  ++++  FW +H R A   F  +A DL+ ++
Sbjct:   51 NEHVALKLIKSSKLTQKAILNLYR----EIQAMKLV-QHPNVMRLLAVAKDVEYPKKKGGSEKVVLVVLELATGGELFDFMMFTGHFSEEIARTYFRQLVSGLHACHVQGVYHRDIKPENLLLDKDFQLRIADFGLSAISEDLSVADDLTTQCGTRAYMSPEIIAGT----PYEGSPADVWSAGVVLFILLAGFPPFQIATRQDWWFRACAMQQYQAFWAAHSRTAV--FSPMAMDLLTRI 280          
BLAST of mRNA_H-paniculata_contig4720.11740.1 vs. uniprot
Match: A0A7S2UW55_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UW55_9STRA)

HSP 1 Score: 196 bits (499), Expect = 1.270e-56
Identity = 102/236 (43.22%), Postives = 148/236 (62.71%), Query Frame = 1
Query:    1 GQYVALKIMRRVQQEDPRMPNASRRLQDEITAMKLCGDHQHTVGLLEHAFPAEYPKKNGRITKVNLLVLELCPNGELFDLLYRGGPVPTFVCKEYFRQLMSGIKYCHDKEVWHRDLKPENLLLDENFGLKIADFGFSASGRNNGLCNSIVGSKTYMAPEVLSRSDTHKPYHGGQADVWSAGVILFTMLSGHPPMEIATQTDWWFRALKLRRHDLFWESHERNAKERFMDVAKDLVN 708
            G+ VALK+++R    +    N    L +EI AMK   +H + + L +    A+YPKKNG   +V +LVLE+  NGELFD L   GP    V + YF Q++S ++ CH + + HRD+KPENL LD++F LK+ADFG SA    + L  +  G+++YMAPE+L     ++ Y G +AD+WSAGV+LF M++GHPP +IA   DWWF  ++ RRH+ FW++H R     F   A+  +N
Sbjct:   41 GEVVALKLIQRSTLNERSRQN----LVNEINAMKAV-NHPNVLNLKDVEEDAQYPKKNGTNKQVVMLVLEIASNGELFDYLMHTGPFSEAVARTYFSQMISALEECHRQGIAHRDIKPENLFLDDSFQLKVADFGLSAM--TDHLLKTECGTRSYMAPEILG----NQRYDGKKADIWSAGVVLFIMMTGHPPFQIALPQDWWFNEIQHRRHERFWQAHLRTTPN-FPPEAQSFLN 264          
BLAST of mRNA_H-paniculata_contig4720.11740.1 vs. uniprot
Match: A0A6V1UZQ7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1UZQ7_HETAK)

HSP 1 Score: 194 bits (493), Expect = 9.010e-56
Identity = 103/237 (43.46%), Postives = 139/237 (58.65%), Query Frame = 1
Query:    1 GQYVALKIMRRVQQEDPRMPNASRRLQDEITAMKLCGDHQHTVGLLEHAFPAEYPKKNGRITKVNLLVLELCPNGELFDLLYRGGPVPTFVCKEYFRQLMSGIKYCHDKEVWHRDLKPENLLLDENFGLKIADFGFSASGRNNG-----LCNSIVGSKTYMAPEVLSRSDTHKPYHGGQADVWSAGVILFTMLSGHPPMEIATQTDWWFRALKLRRHDLFWESHER---NAKERFMD 687
            GQ VALK++R+ +  + +M    R    EI+ M     H +T  LL H     Y KK+    +V LLV+ELCP GELFD L   GP    +C+ YF Q +  ++ CH + V+HRDLKPENL LD    L++ADFG +A+   +G     L  +  G+K YM PE+L+    H+ Y G +AD+WSAGV+LF M +GHPP ++A   DWWF A K  RHD FW +H R   N  + F D
Sbjct:  112 GQQVALKLIRKDKMTNRQMEMIER----EISVMSNL-KHPNTTRLLHHETDVTYTKKDLTTYQVILLVIELCPKGELFDYLMHTGPFSEDLCRAYFAQFLGALEACHLQGVYHRDLKPENLFLDAEAQLRLADFGLAATTMTDGAEYEELLETECGTKAYMCPEMLA----HQRYAGSKADIWSAGVVLFIMATGHPPFQMAVDNDWWFHACKANRHDRFWAAHLRTNPNLSQEFQD 339          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4720.11740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU86_ECTSI7.060e-9057.38Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5KK56_9PHAE8.940e-9057.79Protein kinase domain-containing protein (Fragment... [more]
A0A7S2WUS7_9STRA1.050e-6146.22Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1V9Z6T2_9STRA1.150e-6046.22CBL-interacting serine/threonine-protein kinase n=... [more]
D7G6D0_ECTSI1.440e-5944.35Serine/threonine protein kinase n=1 Tax=Ectocarpus... [more]
A0A6A7G7B6_9CRUS5.140e-5843.75CBL-interacting serine/threonine-protein kinase n=... [more]
A0A067D094_SAPPC8.880e-5744.12CAMK protein kinase n=2 Tax=Saprolegnia TaxID=4769... [more]
A0A418AN82_9STRA1.180e-5643.57Protein kinase domain-containing protein n=2 Tax=A... [more]
A0A7S2UW55_9STRA1.270e-5643.22Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V1UZQ7_HETAK9.010e-5643.46Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4720contigH-paniculata_contig4720:146..4999 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score277.3
Seed ortholog evalue6.4e-72
Seed eggNOG ortholog2880.D7FU86
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0588@1,KOG0588@2759
Ec32 ortholog descriptionSerine/threonine/dual specificity protein kinase, catalytic domain
Ec32 orthologEc-25_003130.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size717
Cds size693
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4720.11740.1prot_H-paniculata_contig4720.11740.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4720 146..4975 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930404.1642754-CDS-H-paniculata_contig4720:145..2381622930404.1642754-CDS-H-paniculata_contig4720:145..238Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4720 146..238 -
1691481276.3073106-CDS-H-paniculata_contig4720:145..2381691481276.3073106-CDS-H-paniculata_contig4720:145..238Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4720 146..238 -
1622930404.18067-CDS-H-paniculata_contig4720:1071..13051622930404.18067-CDS-H-paniculata_contig4720:1071..1305Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4720 1072..1305 -
1691481276.3178573-CDS-H-paniculata_contig4720:1071..13051691481276.3178573-CDS-H-paniculata_contig4720:1071..1305Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4720 1072..1305 -
1622930404.1980503-CDS-H-paniculata_contig4720:2579..26471622930404.1980503-CDS-H-paniculata_contig4720:2579..2647Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4720 2580..2647 -
1691481276.326002-CDS-H-paniculata_contig4720:2579..26471691481276.326002-CDS-H-paniculata_contig4720:2579..2647Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4720 2580..2647 -
1622930404.2120337-CDS-H-paniculata_contig4720:4024..41601622930404.2120337-CDS-H-paniculata_contig4720:4024..4160Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4720 4025..4160 -
1691481276.3376951-CDS-H-paniculata_contig4720:4024..41601691481276.3376951-CDS-H-paniculata_contig4720:4024..4160Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4720 4025..4160 -
1622930404.2247322-CDS-H-paniculata_contig4720:4813..49751622930404.2247322-CDS-H-paniculata_contig4720:4813..4975Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4720 4814..4975 -
1691481276.3504415-CDS-H-paniculata_contig4720:4813..49751691481276.3504415-CDS-H-paniculata_contig4720:4813..4975Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4720 4814..4975 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930404.2403166-UTR-H-paniculata_contig4720:4975..49991622930404.2403166-UTR-H-paniculata_contig4720:4975..4999Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4720 4976..4999 -
1691481276.3585465-UTR-H-paniculata_contig4720:4975..49991691481276.3585465-UTR-H-paniculata_contig4720:4975..4999Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4720 4976..4999 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4720.11740.1

>prot_H-paniculata_contig4720.11740.1 ID=prot_H-paniculata_contig4720.11740.1|Name=mRNA_H-paniculata_contig4720.11740.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=231bp
MRRVQQEDPRMPNASRRLQDEITAMKLCGDHQHTVGLLEHAFPAEYPKKN
GRITKVNLLVLELCPNGELFDLLYRGGPVPTFVCKEYFRQLMSGIKYCHD
KEVWHRDLKPENLLLDENFGLKIADFGFSASGRNNGLCNSIVGSKTYMAP
EVLSRSDTHKPYHGGQADVWSAGVILFTMLSGHPPMEIATQTDWWFRALK
LRRHDLFWESHERNAKERFMDVAKDLVNKML
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mRNA from alignment at H-paniculata_contig4720:146..4999-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4720.11740.1 ID=mRNA_H-paniculata_contig4720.11740.1|Name=mRNA_H-paniculata_contig4720.11740.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4854bp|location=Sequence derived from alignment at H-paniculata_contig4720:146..4999- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGACAATACGTTGCGCTCAAGATAATGCGTAGGGTTCAGCAGGAAGACCC TCGAATGCCCAACGCTTCAAGGCGCCTTCAGGATGAAATTACAGCCATGA AGCTGTGCGGGGATCACCAGCACACGGTCGGCCTGCTGGAGCACGCGTTC CCTGCCGAGTACCCTAAGAAAAATGGCAGGATAACGGTGAGTTTAGTGTA GGTGAGGTGACTGGGGGTCAGAGTGGGCGATGGAGAGGAAAGGGAGGGGC TGGAGAATAGATAGGTGGTAATTTGTTTGGGTAATAATGATGACGATCAT GGTAAGGACTTTCTTTCTCTGTAGTATTTGTAATCTGTATCTAATGGTAT GGTCCTGGGCTTTTTTTTTCGTGAATATTTTTGTTTGCGCTTGAATTTGT CCTCGTTGTTTCCCCACCCTCCTTCCCCTTCCCTCCCTTGATGTCCTCCC GTTCGTTCCTTTATTCGTTTCCAAACAGCCTTTTATTACAAAATGCATCA ACGATAACAAAGAGGATAGACGAGAGACTAATCCGTGTCGAAGAACACGG AGAAAAGTGTATTTGATATTTATGCACAACCGTATCTACCTCTTATCAAT ATCTTCTACTCGTCATACATGTGTGGTGGCCACCTTAGAAACATCTTGAA AGGATAATAACCACCTAATAACGTCTGTCGAGGACAGTTACCCTCGTTTT CACATACCTGTACATGTATATGTGTTTTTTGTTTTTTTTTAATGTTTTTT GGTTACGGTTTCGGTTTCGTTTTTTTTCTTTTCATCTCGCGTCTTGATGG TCGTTTACATTGGCCCATGCCCTTGGGGGGATAAAACAGAAAGTAAATCT GCTGGTGCTTGAGTTGTGCCCGAACGGAGAGCTATTCGACCTGCTGTACC GGGGGGGACCCGTACCAACCTTCGTGTGCAAGGAGTACTTCCGGCAGCTA ATGTCCGGCATCAAATACTGCCACGGTGAGGAGGGCTCTGCTCTGTACTA CTTGAAGCTTTTATAATTTTCGTTTTGTTTGCATGATTCGCCGTGGTACG TAGTTCGCGTAAAAACAAGCTCAGCGCACTCATGCGTATTTCACGTACGT CAAAACACTTTGCATGAATTTCACGACTTTCATCGTTCGGAGCTCGTACA TTATTAGAATATGCGAGGTACAGTCAACATACTTTTTTTCTCACTATTTT TCAGGCTTATGGAAGAGGAGAGACCCTTACGTTGAGTCAATTATGCGGGT AGACTCCGCTACATGCGGGTAGAATCTGCTACATGCGGTAGAATCTGCTA CATGCGGGTAGACTCCGCTATATGCATGTAGACTCCGCTATATGCGGGTA GACTCCGCTATATGCGGGTAGACTCCGCTATGTGCATGTAGACTCCGCTA TATGCATGTAGACTCCGCTATATGCATGTAGACTCCGCTATATGCATGTA GACTCCGCTATGTGCATGTAGACTCCGCTATGTGCATGTAGACTCCGATA TATGCGGGTAAACTAATCCATTGGGCGCCGGTCTCTATAGAAGAATCCCC GCCACATCCCCACCTGAAAAAAACAGGGAAAAACTACGCTTATAGAACGA CGTGATGATGGAGATCAGGATCCGCTGCTGTTCAGACATGGAAACAGTTT ATAGTCCACACCGCTGGTCTGATTAATTTAGTACAGATGTACGTTGCAGT GGACTAATAACTGTGTGTGCGTTTTGTGTTATGTTGCGGGCCATGTGATG ATTTCATAAATCTTCGTTGTTTTGTGTTTTCGGCGACTACTAGTTACGAA GTATACTGATTGCAACTGCGTTTTTAAAATACGAACCAGACTATCGCTCT CCGTCGCCCTCTCTCGTACGACGCTTTTTTCTACGTGGCTATACGGCTCT GATGTGCAGTGAATCTTTAACGCTTTATTCTACTGTTGACTTCCTTTCCT TCTCGCCGTGACAGGACAAACAACCCTCCCTGTCTGCCTGCCTGCTCTTC TCGGCCTATCTAATGATCCTATTATATGCGTTGCAGCTTATCCTTTTGTT TCTTAACCACTGAAGACCTTCCCCTCGCTCCACAAAACACTGTTTTTTTG TCCCTTAACTCACTTTTCCTGCGACTATTAACCATATACTATTAATAGAA CAACGGCACACACTGATTTCAAGCGTTTTTTTTTTTTTTTTTTGCTTTTA TTCAATAACTTGTTTATGTCACTTTTTCGCTTTTTTATTTTTTTGATCCC GTTGTTTTTTTTGTTTCTCTCTCTCTCTCTCTCTTTTGTTTTTCCTTGCC CGGTCCATGTACGAAACGAAATCGACAAAAAAAAAAAAAAATGATCTGCA AGACAAGGAAGTGTGGCATCGCGACCTCAAGCCAGAAAATCTTCTGCTGG ACGAGAACTTTGGTCTCAAGGTAATTACTTGTTAATCTCCCCCACCTATT ATTATGCATGCTCCGTCCTTCCGAGGACGCATGGTCGATGGCCTAACAAC TATGGCATGCAGTCTCTTATATTTAATATATTGGAAATAGTCTAGGCCCA CAAAATACATCATATTTGGCAACGTACATAAGCAGAAGTGATTTGTCCAT CGGAAATGGCTCTGAGGTATTTCGGAATAAAGCTCCATCTTCCTTTTCGA GAAAGGACGCATGGTCGACAGTGTAACAACTACGGGCATCCACGGAGCTA CGCCCGAACGGGTAGGGTAGCTCGTGAACTGAGCATGACTGGAAGTCTCC ATTAAAGGAAATGCAGACACTCAGTAATCTTCCGAAGAGTGGAAGCAACG GAAAAGGTTTTTGCCTCGACCTTCCGGGGGTTAAAAAAAAAAAAAAATGA CTGGAAGTCTAATCAGACGTCTTTTAGTGGGTGCAACCCCCACACTGCCT GCTTGGTTCGGCCGAACCGGGGTGGTGCCTACCCCGCAGAGGAATTATTT AAATATCTCTGTTCTGTTAAAGAAAATGTAGACCTGCTTGGGTGAATACC TGAGTATGGAGGCAGCGGTAAAGGTTTTTGCCTCAGCCTTCCGGGGGTTT TAAAAAAAACAAAAAAAACCCTACGGGCATGAAGAAAAGGAGTAGTTGCG TCAGTTTTTGGATAATGACCAAGTAATCCAGCAAGTTGGAGATGCTGAAC ATGCGTCCTTTTTGGTTTACGTTTGTTGTGATATGTTTCCTTTCGTCTTT TTATCCTCCCTCCCCCAAGGATAGTAGTACCCTCCCACCCACGGGTGATG CCATTACACTCGATACAGACAGGAAATTAATTGTCATCGTCATCGTTCTG TGCATTGCCCACAACGATTGGATCGCTCGATATATATATATATATTAACA GCCTCCTCTCCGGCGCCCAAAAGCTTATCTCAAGATATTAATAAAAAGTA CATATGATTATATTCTCATGATATGTAGTATGTCAAACACTTATATTTCG CGCTGCGGCGGGTAAGGAAATAAATGTTATTATTATTTTTAATAATTGTA ATAATAATGGTAATAACAATAACAATAGTAATAATAATGGTAGTAACAAT AATAATAGTAATAATAATGGTAATAACAATAATAATAGTAATAATAATGG TAATAACAATAATAATAGTAATAATAATGGTAATAACAATAATAATAGTA ATAATAATGGTAATAACAATAATAATAATAATAATACAAAACAGATCGCG GATTTCGGGTTCAGCGCATCTGGACGCAACAATGGGCTCTGCAACAGCAT CGTGGGCTCGAAAACATACATGGCCCCAGAAGTTTTGTCGAGAAGTGACA CACACAAGCCGTACCACGGCGGCCAGGCCGATGTTTGGAGCGCCGGGGTC ATCCTATTCACCATGCTGTCCGGGCACCCACCAATGGAAATCGCGACCCA GACAGATTGGTGGTTCCGCGCGCTCAAGGTGTGTGTTATATCGTTCTTTG CTTCCTTCTTTCTTGTTTCCAGGGCAATGGCCAAGAAAAGGTATGGCTGC ATTTACATTGTGAGTTTTGGACACTTGAGGGTATACAGCGGACAGCGACT TTGTTTTTAAGGGTTTATGAAAATTGAGTGTGAAAGGACCCGAATTTCTG GGGGGGTTATTAGCTACGAGCACTGGTATAACCTGGATAATGGCTGTAGG AGTTGATTCCTCCGTTGGTGTGGTGCGACAATTTCTTTTTTAATCTATCT TTTACTGGGTCAAATAGGCTTTCCGGTGTGCCAGAAATTGAAATATATTG GTGTAACAAAGAGTGAAGAGTTGGAAGAGGGCCTGCTTCAGTGGTACGAG AGTACTACTAAGGTGTGTTTCCAAAGAGCTTGACCCTTTTTTTTTTGTAC CTGTAGTTTTGCTGTATTATTTTTGTCTGCCCTGGCTGATATACGTCACA CGTTGAAATACGAATAGGTTGGTTAGTTGGGTCTGCACTGATTTTGGGTG CGTTTTTTCGCGTAGTAAAGTGTACCGATCGACGCGTAGACTACTGTGGT TTTAGCCAGTCCAGTAATGGCACTCACTGTTGAGGGTAAGCCGTCGTGAT TCCATAGTAATTGTTTCTCTTGGATATGATTTGAGTACGTGCTTACTCGC TTGCTTGCTTATTTAATTTGCGTGTAATTGCCTGTTACAGTTTTTTTTTT TTTTTTTCGTGTTAGTAATTTTTTTCTATTTTTTTGCTCACCATTATGTA CTTGTTCGCTGTCGCCGTCCACATCCTCCTCCTCCTTTGGCATGTGACTG CAACACAACAGCTGAGGAGGCACGATCTGTTTTGGGAGAGCCACGAGCGA AACGCTAAGGAGCGTTTTATGGACGTGGCCAAGGACCTAGTGAACAAGAT GCTC
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Coding sequence (CDS) from alignment at H-paniculata_contig4720:146..4999-

>mRNA_H-paniculata_contig4720.11740.1 ID=mRNA_H-paniculata_contig4720.11740.1|Name=mRNA_H-paniculata_contig4720.11740.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1386bp|location=Sequence derived from alignment at H-paniculata_contig4720:146..4999- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGTAGGGTTCAGCAGGAAGACCCTCGAATGCCCAACGCTTCAAGGCG
CCTTCAGGATGAAATTACAGCCATGAAGCTGTGCGGGGATCACCAGCACA
CGGTCGGCCTGCTGGAGCACGCGTTCCCTGCCGAGTACCCTAAGAAAAAT
GGCAGGATAACGATGCGTAGGGTTCAGCAGGAAGACCCTCGAATGCCCAA
CGCTTCAAGGCGCCTTCAGGATGAAATTACAGCCATGAAGCTGTGCGGGG
ATCACCAGCACACGGTCGGCCTGCTGGAGCACGCGTTCCCTGCCGAGTAC
CCTAAGAAAAATGGCAGGATAACGAAAGTAAATCTGCTGGTGCTTGAGTT
GTGCCCGAACGGAGAGCTATTCGACCTGCTGTACCGGGGGGGACCCGTAC
CAACCTTCGTGTGCAAGGAGTACTTCCGGCAGCTAATGTCCGGCATCAAA
TACTGCCACGAAAGTAAATCTGCTGGTGCTTGAGTTGTGCCCGAACGGAG
AGCTATTCGACCTGCTGTACCGGGGGGGACCCGTACCAACCTTCGTGTGC
AAGGAGTACTTCCGGCAGCTAATGTCCGGCATCAAATACTGCCACGACAA
GGAAGTGTGGCATCGCGACCTCAAGCCAGAAAATCTTCTGCTGGACGAGA
ACTTTGGTCTCAAGACAAGGAAGTGTGGCATCGCGACCTCAAGCCAGAAA
ATCTTCTGCTGGACGAGAACTTTGGTCTCAAGATCGCGGATTTCGGGTTC
AGCGCATCTGGACGCAACAATGGGCTCTGCAACAGCATCGTGGGCTCGAA
AACATACATGGCCCCAGAAGTTTTGTCGAGAAGTGACACACACAAGCCGT
ACCACGGCGGCCAGGCCGATGTTTGGAGCGCCGGGGTCATCCTATTCACC
ATGCTGTCCGGGCACCCACCAATGGAAATCGCGACCCAGACAGATTGGTG
GTTCCGCGCGCTCAAGATCGCGGATTTCGGGTTCAGCGCATCTGGACGCA
ACAATGGGCTCTGCAACAGCATCGTGGGCTCGAAAACATACATGGCCCCA
GAAGTTTTGTCGAGAAGTGACACACACAAGCCGTACCACGGCGGCCAGGC
CGATGTTTGGAGCGCCGGGGTCATCCTATTCACCATGCTGTCCGGGCACC
CACCAATGGAAATCGCGACCCAGACAGATTGGTGGTTCCGCGCGCTCAAG
CTGAGGAGGCACGATCTGTTTTGGGAGAGCCACGAGCGAAACGCTAAGGA
GCGTTTTATGGACGTGGCCAAGGACCTAGTGAACAAGATGCTCCTGAGGA
GGCACGATCTGTTTTGGGAGAGCCACGAGCGAAACGCTAAGGAGCGTTTT
ATGGACGTGGCCAAGGACCTAGTGAACAAGATGCTC
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