mRNA_H-paniculata_contig4717.11733.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4717.11733.1 vs. uniprot
Match: D7G501_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G501_ECTSI) HSP 1 Score: 592 bits (1527), Expect = 7.580e-189 Identity = 444/963 (46.11%), Postives = 521/963 (54.10%), Query Frame = 1
Query: 25 TITQVLVAGAVAVLSPASRSTPAAGIGSLPFGRGGGGGINATA----------DPSPANNGGLDRAAMAEISR-------AERARWSDLETWMAASLSTLEVCTRCVTWNSPAGYIAGLAYVRLFSLVLRLLCPAAGENASETSLSGGGRTQKDAAARASALG--------WGTPVEETLD----------KLQWGRGRLASVVDDLMWRLREGLPGRDVRLRLLQVTCTHLRVLAFASGDYRVSDDVLMELVSVLQGELGELDAQAGVVTQQPQRAPAMTADYNSAAGGPGSSIRAPGGDSRRPFAPPHSTGGGGSVPRRASFGEDGEGFAGGXXXGYLSNGANGGVDE------------AGR--NIADVMAHELVVGSLVRLALSAESETAVEVLQVLGHERERARERERLGRGGVGPMEEVVMKGIRVVELLVVGQTGRNQPGDDAAGEGTQGGGSRPNALPGAAMENKSLLKTFLSTMDLGWQAAVQPDERVLGDGKAGAFDHEARAFPFLHRRLRRLLCGRENDTLLKIDPQFSRDGREKDGDDACCFGAEDEEGIFDAHAWQEEAPQCQLNGGSDPVVVTATYVVSYRQ----GWAVRSSSSGS-------------AGMEGWGAASGSGGG---------VMLRIRAYNTTNAKLLGFVIRLSFGQGVEAAGMGDGGRVETSVDEVLMPAAAYTLEVPVAPVGGLKDVVVHVTVIFPDAEPEPEFEQEGAAELLGGE----GLGAVAGGEGGTT-SFCGQDNPSEGVGXXXXXXXXXXXXXVRVTIHAGSYRLPAEAFLGPP--SAASWDAFQTVWSGLPYAHAIPVQNCR-IP-------GEEGL---LRTAAGVQLAMSVPTSSSSSNDA---DPRASAVVRCPGGNTDYAVSAAWAFEAWDGSPVLCALTAMKTPFSYVFTASGKDSATRRNGDGGAVGCCEQQQTWCGRME 2625
T QVL AG VA LSPA+ A GIG+L R ATA + S NG + AA A++ RWSDLETW+ SL+ LE TRCV WNS GY+ GLAYVRL SLVLRLLCP A SG R A R G G V LD +L W R RLA VVDDLMWRLREGLPGRD+RLRLLQ TCTH+ + A SGD V++D ELVSVLQGELGELDAQAG TQ P+ A A T+ + PG GD H+ GG XXX +GR ++ DVMAHELV+G LVRLAL E ETA EV+ VL HER RAR RERLGRG VGPMEE+V KGIR ++LLV T +G+ P A+ LLK + TMDLGW A VQPDER L A FDHE AFP LHRRLRRLLCG D + S + GD GA F+AHAW+EEAPQ QLNGGSDPVVVTA+++V + G A ++ G AG++G A+ G+ G V LRIR +N TN +L GF IRLSFGQG EA GMG GGRVE++V EVLMP+AA+TLEVPV P+ L DV+VHV+V+FPD EPE EFE EG AELLG E G G +GG G S GQ+ PS G V V + AGSYR+PAEAFLGPP +AA+W FQ VW GL Y AIPV++ R +P G E LRTA+GV+LAM +P SS D R++A V CP GNTDYAVS+AW F+AWDG+PVLCALT MK PFS + + G G+ Q +W GR+E
Sbjct: 477 TCAQVLAAGVVAALSPAAEKAAAVGIGNLA--RSCDSRCRATAARSDTSEGHKNGSSVGNGNANFAAXXXXXXXXXXXXXAKKGRWSDLETWLDCSLTALEAFTRCVNWNSKTGYVGGLAYVRLLSLVLRLLCPLTAAPAD----SGDDRDSASTADRVLLGGRSYGGDGKGGVDVGVALDDDSTAGGGRGRLAWARQRLAHVVDDLMWRLREGLPGRDIRLRLLQATCTHVGLSAVVSGDVGVTEDSANELVSVLQGELGELDAQAGFSTQ-PRPARAATSGGDE----PGD------GDDGHRGTDAHAGRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQWESISSISGRTGSLTDVMAHELVIGCLVRLALVTEGETAHEVMSVLEHERGRARARERLGRGAVGPMEEIVAKGIRALQLLVFPST------SPKVADGS------PEAV---------LLKRLVRTMDLGWHAVVQPDERALTGSSAELFDHEVHAFPNLHRRLRRLLCGGIGVDTASTDERPSTGSGDFPGDLEA--GAAAVITPFEAHAWEEEAPQAQLNGGSDPVVVTASHIVYHGDSGTGGGACGATGGGGRALGPTTLAALAFAGVDGDAASPGTIPGLVGKVASRAVTLRIRVFNATNTRLHGFSIRLSFGQGGEAVGMGGGGRVESAVQEVLMPSAAHTLEVPVTPLDVLTDVIVHVSVVFPDTEPESEFESEGTAELLGVESTEKGRGGDSGGGGSNALSGFGQNQPSFDGGAGDTGVDGGGSGSVTVILQAGSYRVPAEAFLGPPERAAATWVGFQNVWCGLAYVTAIPVESARHLPRAITAAAGHEHAAMSLRTASGVRLAM-MPVSSRGGGGRGCDDARSAAAVECPVGNTDYAVSSAWVFQAWDGTPVLCALTVMKAPFSLLQASGGGXXXXXXXGE---------QPSWYGRLE 1389
BLAST of mRNA_H-paniculata_contig4717.11733.1 vs. uniprot
Match: A0A836CDV2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDV2_9STRA) HSP 1 Score: 152 bits (385), Expect = 6.910e-34 Identity = 279/1009 (27.65%), Postives = 390/1009 (38.65%), Query Frame = 1
Query: 25 TITQVLVAGAVAVLSPASRSTPAAGIGSLPFGRGGGGGINATADPSPANN----GGLDRAAMA----EISRAERARWSDLETWMAASLSTLEVCTRCVTWNSPAGYIAGLA--YVRLFSLVLRLLCPAAGENASETSLSGGGRTQKDAAARASALGWGTPVEETLDKLQW-GRGRLASV-------VDDLMWRLREGLPGRDVRLRLLQVTCTHLRVLAFASG---DYRVS----------DDVLMELVSVLQGELGELDAQAGVVTQQPQRAPAMTADYNSAAGGPGSSIRAPGGDSRRPFAPPHSTGGGGSVPRRASFGEDGEGFAGGXXXGYLSNGANGGVDEAGRNIADVMAHELVVGSLVRLALSAESETAVEVLQVLGHERERARERERLGRGGVGPMEEVVMKGIRVVELLVV-GQT----GRNQPGDDAAGEGTQGGGSRPNALP---GAAMENKSLLKTFLSTMDLGWQAAVQPDERV--LGDGKAGA-FDHEARAFPFLHRRLRRLLCGRENDTLLKIDPQFSRDGREKDGDDAC---CFGAEDEEGIFDAHA-WQEEAPQCQLNGGSDPVVVTATYVVSYRQGWAVRSSSSGSAGMEGWGAASGSGGGVMLRIRAYNTTNAKLLGFV-IRLSFGQGVEAAGMGDGGRVETSVDEVLMPAAAYTLEVPVAPVGGLKDVVVHVTVIFPDAEPEPEFEQEGAAELLGGEGLGAVAGGEGGTTSFCGQDNPSEGVGXXXXXXXXXXXXXVRVTIHAGSYRLPAEAFLGPPSAASWD----AFQTVWSGLPYAHAIPVQNCRIPGEEGLLRTAAGVQLAMSVPTSSSSSNDADP------------------RASAVVRCPGG---NTDYAVSAAWAFEAWDGSPVLCALTAMKTPFSYVFTAS---GKDSATRRNGDGGAVGCCEQQ-----QTWCGRMEVRCGSLACAGFAQTSSWRLTRFVTNGVFAPSGDGREQ-RQQQLYHPGAGSILATPAVGGLNG 2808
T VL AGA A+ A+ + P+A S G +N ++ PSP G+ R +A + + A RW DLE W+ S + L CV W+ A + A Y RL +L+LRL ALG +P+ + Q G RLA +D L W+L +G+PGR R+ LL C +L ++ A+G D + + DD ++LV+ + EL LDA A T++ SAA R A + V A ++G LVRLA + +S A L+ ER+R R+ LG G GP+ + + + +E + G+ G + AA G P LP G + + K L LG A ER LG G G FD+ G + + ++ F R G C HA W +P QLNGGS+P+ +TA + ++ R W +S+ G G GV LR+ AYN TN + + IRL FG G A + V + + L+P A YT +VP+A G + + V T+ AEP+PE E + AAEL GG+ L XXXXXXXXXXXXX + + AG Y + AEA L P + AFQ+++SGL + A+PV + P L A + +AM P ++DA R +A V P D+A++AAWAFE W GS + LTAMK P+ A+ + A AV W GR+E RC + CA + RL FVTNG FA G + R + PG G A A GG NG
Sbjct: 587 TCAYVLTAGATAI---AAATAPSADADS-------GDDVNGSSLPSPVQQQLPLSGVGRYPLAPHAPDAAAAAAERWCDLERWVTMSGAVLHATGLCVGWDGGAASASAGADGYTRLLTLILRLTSXXXXXXXXXXXX-----XXXXXXXXXXALGSPSPIFSPNPRPQLSGDARLARAAAAHVPRLDQLGWKLAQGMPGRRARVALLGALCRYLADVSGAAGQAADEQAARGVRLRPGEEDDAALDLVARVSVELAALDAPA-------------TSNLKSAAPXXXXXXXXXXXXXXXXXXXXXX------XERAAQW--------------------------------RVNAQHALLGCLVRLAAAYDS-AAAPALKAARAERDRVCLRDGLGGQGNGPLVDQARRAVAALEAVTRRGRASLAGGAAELAAAAAARAALGFIGTPPGLPPPAGPLSADDAARKAALRAALLGELALPPAQERDARLGCGGGGTGFDYRT---------------GAQQEVAARLSRHFRWPPRGGHGAAPLPPPCRALPGXXXXXRPHAAW---SPPTQLNGGSEPLHLTACHRLTPR--WRAHNSAGGXXXXX-------XGKGVSLRVCAYNATNGSITDALEIRLGFGAGAAPAAVPAAAVV---LRDRLLPGAVYTWDVPLALAPGWRALAVTATITMLHAEPDPELEADSAAELAGGDALLRAX--------XXXXXXXXXXXXXXXXXXXXXXXXXXPLVVGAGMYVVHAEALLLPRAXXXXXXXLAAFQSLFSGLAHRTALPVTSA--PWATSLCTNPAELAMAMGAPMPGDGTDDAAAPETADDLELLDADHGDGVRRTAWVPLPPALLSACDHAITAAWAFETWQGSAITAQLTAMKQPYGAADIAAIGGAESGALSPKALAAAVXXXXXXXXXAAHAWVGRLEFRCADVQCAETVAAHAARLAAFVTNGAFALLPAGSDVLRATSVRAPGRGGGSA--AAGGDNG 1486 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4717.11733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4717.11733.1 >prot_H-paniculata_contig4717.11733.1 ID=prot_H-paniculata_contig4717.11733.1|Name=mRNA_H-paniculata_contig4717.11733.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=953bp MLSSFPCKTITQVLVAGAVAVLSPASRSTPAAGIGSLPFGRGGGGGINATback to top mRNA from alignment at H-paniculata_contig4717:2775..14095+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4717.11733.1 ID=mRNA_H-paniculata_contig4717.11733.1|Name=mRNA_H-paniculata_contig4717.11733.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=11321bp|location=Sequence derived from alignment at H-paniculata_contig4717:2775..14095+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4717:2775..14095+ >mRNA_H-paniculata_contig4717.11733.1 ID=mRNA_H-paniculata_contig4717.11733.1|Name=mRNA_H-paniculata_contig4717.11733.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5718bp|location=Sequence derived from alignment at H-paniculata_contig4717:2775..14095+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |