mRNA_H-paniculata_contig47.11700.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig47.11700.1
Unique NamemRNA_H-paniculata_contig47.11700.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig47.11700.1 vs. uniprot
Match: A0A6H5JQC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQC7_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 1.330e-36
Identity = 91/172 (52.91%), Postives = 107/172 (62.21%), Query Frame = 1 
Query:   61 VVSFAGNPGTGKACLAADVVARKDVRAKFEERVLWLQVGRSAGNDLPEFLRRVAHAYHKVVLCEHLKDPPPLPPVDRFR-PANAV-----------------VPSAAEATAPAAL---GETDDEVQEEARAVAKAEETEAAAKAAQAWFTPYVSYLGLRCLAVLEDVWEADV 513
            VV+FAG+ G GKACLAA+VV R+DVRAKF + VLWLQVG S G DL   L R+AHAYH+VVLC+ L++PPPLPP+ RFR P NA                  V S   AT  AA    G   D+       +    + EA A AA  WFTPY+S LGLRCL VLEDVWEA+V
Sbjct:  518 VVTFAGSSGAGKACLAAEVVGRRDVRAKFGDSVLWLQVGLSGGKDLACLLHRLAHAYHRVVLCKRLRNPPPLPPIGRFRGPRNAEAAAXXXXXXXXXXXXCGVFSTMNATFKAAYNFRGIRCDDPLFPTFCLGLLLKAEATATAAATWFTPYMSGLGLRCLVVLEDVWEAEV 689
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BLAST of mRNA_H-paniculata_contig47.11700.1 vs. uniprot
Match: D8LCK2_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK2_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 2.870e-33
Identity = 82/158 (51.90%), Postives = 96/158 (60.76%), Query Frame = 1 
Query:   61 VVSFAGNPGTGKACLAADVVARKDVRAKFEERVLWLQVGRSAGNDLPEFLRRVAHAYHKVVLCEHLKDPPPLPPVDRFR-PANAVVPSAAEATAPAALGETDDEVQEEARAVAKAEETEAAAKA------AQAWFTPYVSYLGLRCLAVLEDVWEADV 513
            VV+FAG+ G GKACLAA+VV R+DVRAKF + VLWLQVGRS G DL   L R+AHAYH+VVLC+ L++PPPLPP+ RFR P N    +AAE                                       A  WFTPY+S LGLRCL VLEDVWEA+V
Sbjct:  618 VVTFAGSSGAGKACLAAEVVGRRDVRAKFGDSVLWLQVGRSGGTDLACLLHRLAHAYHRVVLCKRLRNPPPLPPISRFRGPRNGE--AAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATWFTPYMSGLGLRCLVVLEDVWEAEV 773
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47.11700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JQC7_9PHAE1.330e-3652.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCK2_ECTSI2.870e-3351.90Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig47contigH-paniculata_contig47:41641..44061 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size514
Cds size513
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig47.11700.1prot_H-paniculata_contig47.11700.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig47 41641..44061 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930399.0290248-CDS-H-paniculata_contig47:41640..418111622930399.0290248-CDS-H-paniculata_contig47:41640..41811Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47 41641..41811 +
1691481273.7936215-CDS-H-paniculata_contig47:41640..418111691481273.7936215-CDS-H-paniculata_contig47:41640..41811Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47 41641..41811 +
1622930399.0482666-CDS-H-paniculata_contig47:42011..421301622930399.0482666-CDS-H-paniculata_contig47:42011..42130Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47 42012..42130 +
1691481273.8039658-CDS-H-paniculata_contig47:42011..421301691481273.8039658-CDS-H-paniculata_contig47:42011..42130Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47 42012..42130 +
1622930399.064122-CDS-H-paniculata_contig47:42746..428081622930399.064122-CDS-H-paniculata_contig47:42746..42808Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47 42747..42808 +
1691481273.81416-CDS-H-paniculata_contig47:42746..428081691481273.81416-CDS-H-paniculata_contig47:42746..42808Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47 42747..42808 +
1622930399.1024292-CDS-H-paniculata_contig47:43351..434721622930399.1024292-CDS-H-paniculata_contig47:43351..43472Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47 43352..43472 +
1691481273.8243027-CDS-H-paniculata_contig47:43351..434721691481273.8243027-CDS-H-paniculata_contig47:43351..43472Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47 43352..43472 +
1622930399.1191502-CDS-H-paniculata_contig47:44021..440611622930399.1191502-CDS-H-paniculata_contig47:44021..44061Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47 44022..44061 +
1691481273.8340583-CDS-H-paniculata_contig47:44021..440611691481273.8340583-CDS-H-paniculata_contig47:44021..44061Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47 44022..44061 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig47.11700.1

>prot_H-paniculata_contig47.11700.1 ID=prot_H-paniculata_contig47.11700.1|Name=mRNA_H-paniculata_contig47.11700.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=171bp
RSGHGEGGDEENASAMNASAVVSFAGNPGTGKACLAADVVARKDVRAKFE
ERVLWLQVGRSAGNDLPEFLRRVAHAYHKVVLCEHLKDPPPLPPVDRFRP
ANAVVPSAAEATAPAALGETDDEVQEEARAVAKAEETEAAAKAAQAWFTP
YVSYLGLRCLAVLEDVWEADV
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mRNA from alignment at H-paniculata_contig47:41641..44061+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig47.11700.1 ID=mRNA_H-paniculata_contig47.11700.1|Name=mRNA_H-paniculata_contig47.11700.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2421bp|location=Sequence derived from alignment at H-paniculata_contig47:41641..44061+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGAGTGGTCATGGGGAGGGTGGGGACGAGGAGAATGCGTCGGCGATGAA
TGCCAGTGCTGTGGTGTCGTTTGCTGGGAATCCCGGCACGGGGAAGGCAT
GTTTGGCAGCGGATGTGGTAGCGCGCAAGGACGTACGTGCGAAGTTCGAG
GAGAGGGTGTTGTGGCTGCAGGTGTGTGGATATGAAAGGGTGTGAGGCTT
GGTTATTGGCTCCTTGTCACTTTCTTTTTTTTTGGTAAAATGCACCATCC
GCTCAAATCCCGAAAAGTGTAAACATACTAATACTTCAGTCGTCCTTATT
TCCTTTGTGATGTGGGATATGGTACTATCTTACTACGCCGTTTTCAATAT
CTGTGTCTATATGTTCATCAGGTCGGCCGATCTGCCGGTAACGACCTGCC
GGAGTTCCTTCGACGAGTGGCTCATGCCTACCACAAGGTGGTCTTGTGCG
AGCACCTCAAAGATCCACCGCCTTTACCTCCGGTGGATAGGTGAGGGTCG
GGTTGATTACCTCTCAAGCAGTCAATCGGAGTTCAAGCGTGAACGCTGGT
GTGCGTCCTGTCCTTTGATTACGTAGCTCGGTAAACTGGTGATATTTTTG
GAATATTTTTACCGTCTGTAATAGACCAACTCCTTGGAAGTCCAGGCGAG
GGCAACGGGGCGTTTTGCGTGCGCCCAGCACAGGTACGAGTCGCACAAGC
GTAGCGATAGATGTAAAACTTCGTCAGATGGTATCATGATTGGATCGCCT
TCGAATGAAACAGGAGGACGCACTACTTGGGCGTCGAAAGGCGTATGTCT
CCTGGTCTGACGTAAAAACGTGGCATTTTGCTGCCGTCATGGAACAATTT
TTGTTACTGTACATTCAGTGTCTGGCGGTGTCTAGAATCGTAACGCTACT
CTGAATCGGAAACCCGAACTCAACAAGAGACAAACCGAAGCTTGTCGTAG
GGTCGTGAAATGTTTGAGATTTCGCGGGAAGTGAGCTCAGACAGCTACGC
GTCGCGTGGTCAAAGCTGTGGCAACTACGGCATGCGATACATGAGGATCC
TCTCCCCTTCCACCCACTTTGTCGAACCTGTCTAATGTTTTCTCGTAACT
TGGAAGGTTTCGACCCGCTAATGCCGTGGTTCCATCGGCTGCCGAGGCAA
CAGCTCCGGCTGCACTAGGTGAGGCCTCATGAAGGAAAAATACATGAGCA
TCGAGAAAAGGACACGAGGTAGCTATCGATATGGGACCGTGACGGGGCAC
TGGGCAAAAAGAGAAAAGACCCGTGGATTACATGAATAAAATAAAAACAA
ACGAGGGGCGTGAAGCTTTTATACGATTCAAGAGAGCACTCAGCGGTATG
GTCACTCCGGAGGGAGGGTGTTTCTATCGAAGCGGGCTGACGACATTATG
ACCTACCTGCCAGCGGGAACATTTTTTTTCGTTCTTTCATTTTTGTGTCC
GCTTCGTGGATACCTATCCTTATCTACCTCGCTTGTTTCTCTTTTGACGA
CAGGAATTGGGGGACGCGGAACACCGGGTTCAGGTTCCAAATGAGCACGC
GACAAGACTCTATCCAGCAAAGCCGAACCGTCACCAACTCCAGTCAAACT
GTCCGCACTACCAGGAAATAATTTTAGTCAATCCACTAATTCTTACATGG
TTGTGTCTCCACTTGTTTTGGACGACTAAGTGGTCGTTGGATGTGTGATG
TTGTTCTCCAGGTGAAACGGATGATGAAGTGCAGGAGGAGGCCAGAGCGG
TGGCGAAGGCGGAGGAGACGGAGGCCGCCGCTAAAGCGGCGCAAGCGTGG
TTCACCCCTTACGTTTCATATCTTGGTTTAAGGTATTGTGTGTACATGCT
GATTCGGGAGTAAATAGCGTGTCTACGGGATCTCACGTGTCCGGTAGGTG
CGTGTTTTGGTTCGTGCACACACTATTGAGTCAAAACAAGAGTGTACGAC
TATCATGGAATGGCTCGGTTTTCGCAGATTCAAAGTTTTTAGTCAGTTCC
AAAGGTCATCACCTACCGTCGAATGCCATACCTGAGGGAGTATAATGGAC
TCGAAAGAGTAGGGGTCAACCATCCAAGAGCCTGCGACTTACCGATATCC
CATGCAGGCCTTGTTTGACCGTTTATCTGTTAACGGAACAAAAATGGCGT
TTTTTGGTTGCCGTTCTGCGCCGGATCCAAAGAGTAAGCTCCAAATCGAC
GGAAGGAAGACCCCACTTGGGACGTGAGATACTAGGCGGAATAACTAGCT
TTGTATGACTTGTGAAGATGTTGTGCAGATAGATCTATTTGTCAGTATTC
CAGAGATAGGTTATTCGTGTTGTCGACACAAATGGCGTTTTATAAATTGG
AAACGTTTTTGTGTGGGTGTTCGCTTAACAGGTGTTTGGCGGTTTTGGAG
GACGTGTGGGAGGCGGACGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig47:41641..44061+

>mRNA_H-paniculata_contig47.11700.1 ID=mRNA_H-paniculata_contig47.11700.1|Name=mRNA_H-paniculata_contig47.11700.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1026bp|location=Sequence derived from alignment at H-paniculata_contig47:41641..44061+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGAGTGGTCATGGGGAGGGTGGGGACGAGGAGAATGCGTCGGCGATGAA
TGCCAGTGCTGTGGTGTCGTTTGCTGGGAATCCCGGCACGGGGAAGGCAT
GTTTGGCAGCGGATGTGGTAGCGCGCAAGGACGTACGTGCGAAGTTCGAG
GAGAGGGTGTTGTGGCTGCAGAGGAGTGGTCATGGGGAGGGTGGGGACGA
GGAGAATGCGTCGGCGATGAATGCCAGTGCTGTGGTGTCGTTTGCTGGGA
ATCCCGGCACGGGGAAGGCATGTTTGGCAGCGGATGTGGTAGCGCGCAAG
GACGTACGTGCGAAGTTCGAGGAGAGGGTGTTGTGGCTGCAGGTCGGCCG
ATCTGCCGGTAACGACCTGCCGGAGTTCCTTCGACGAGTGGCTCATGCCT
ACCACAAGGTGGTCTTGTGCGAGCACCTCAAAGATCCACCGCCTTTACCT
CCGGTGGATAGGTCGGCCGATCTGCCGGTAACGACCTGCCGGAGTTCCTT
CGACGAGTGGCTCATGCCTACCACAAGGTGGTCTTGTGCGAGCACCTCAA
AGATCCACCGCCTTTACCTCCGGTGGATAGGTTTCGACCCGCTAATGCCG
TGGTTCCATCGGCTGCCGAGGCAACAGCTCCGGCTGCACTAGGTTTCGAC
CCGCTAATGCCGTGGTTCCATCGGCTGCCGAGGCAACAGCTCCGGCTGCA
CTAGGTGAAACGGATGATGAAGTGCAGGAGGAGGCCAGAGCGGTGGCGAA
GGCGGAGGAGACGGAGGCCGCCGCTAAAGCGGCGCAAGCGTGGTTCACCC
CTTACGTTTCATATCTTGGTTTAAGGTGAAACGGATGATGAAGTGCAGGA
GGAGGCCAGAGCGGTGGCGAAGGCGGAGGAGACGGAGGCCGCCGCTAAAG
CGGCGCAAGCGTGGTTCACCCCTTACGTTTCATATCTTGGTTTAAGGTGT
TTGGCGGTTTTGGAGGACGTGTGGGAGGCGGACGTGGTGTTTGGCGGTTT
TGGAGGACGTGTGGGAGGCGGACGTG
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