mRNA_H-paniculata_contig46995.11696.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig46995.11696.1
Unique NamemRNA_H-paniculata_contig46995.11696.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig46995.11696.1 vs. uniprot
Match: A0A6H5JM72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM72_9PHAE)

HSP 1 Score: 202 bits (513), Expect = 1.770e-58
Identity = 98/110 (89.09%), Postives = 103/110 (93.64%), Query Frame = 1 
Query:    1 QELLPKARVVYCSATGVTDIGNLAYATRLGLWGPHAPFGSFKEFKESMEKRGLGALEMLAMELKAKGSYVSRGLGWKGAEFETCEAQLSPSTVVMYDEAVEFWMELRKEL 330
            Q++LPKARVVYCSATGVTDIGNLAYATRLGLWG H+PF  FKEFKESMEKRGLGALEMLAMELKAKGSYVSRGLGWKGAEFETCE +L PSTV MYD+AVEFWM LRKEL
Sbjct:  276 QDMLPKARVVYCSATGVTDIGNLAYATRLGLWGEHSPFRGFKEFKESMEKRGLGALEMLAMELKAKGSYVSRGLGWKGAEFETCEVKLPPSTVEMYDKAVEFWMLLRKEL 385
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BLAST of mRNA_H-paniculata_contig46995.11696.1 vs. uniprot
Match: D7FWB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWB6_ECTSI)

HSP 1 Score: 202 bits (513), Expect = 5.470e-58
Identity = 98/110 (89.09%), Postives = 103/110 (93.64%), Query Frame = 1 
Query:    1 QELLPKARVVYCSATGVTDIGNLAYATRLGLWGPHAPFGSFKEFKESMEKRGLGALEMLAMELKAKGSYVSRGLGWKGAEFETCEAQLSPSTVVMYDEAVEFWMELRKEL 330
            Q++LPKARVVYCSATGVTDIGNLAYATRLGLWG H+PF  FKEFKESMEKRGLGALEMLAMELKAKGSYVSRGLGWKGAEFETCE +L PSTV MYD+AVEFWM LRKEL
Sbjct:  270 QDMLPKARVVYCSATGVTDIGNLAYATRLGLWGEHSPFRGFKEFKESMEKRGLGALEMLAMELKAKGSYVSRGLGWKGAEFETCEVKLPPSTVEMYDKAVEFWMLLRKEL 379
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BLAST of mRNA_H-paniculata_contig46995.11696.1 vs. uniprot
Match: A0A835YXT2_9STRA (P-loop containing NTP hydrolase pore-1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXT2_9STRA)

HSP 1 Score: 150 bits (379), Expect = 6.310e-40
Identity = 73/110 (66.36%), Postives = 83/110 (75.45%), Query Frame = 1 
Query:    1 QELLPKARVVYCSATGVTDIGNLAYATRLGLWGPHAPFGSFKEFKESMEKRGLGALEMLAMELKAKGSYVSRGLGWKGAEFETCEAQLSPSTVVMYDEAVEFWMELRKEL 330
            Q+ LP ARVVY SATGVTD+ NLAY  RLGLWGP  PF  FK+F ESM+KRGLGALEMLA+ELKA G+YVSRGL W+GAEF+T E +L    V   D A +FW  LR EL
Sbjct:  219 QDALPLARVVYLSATGVTDVTNLAYCDRLGLWGPQTPFSCFKDFMESMDKRGLGALEMLALELKAAGAYVSRGLSWQGAEFDTVECELPLQAVAQNDAACKFWQHLRSEL 328
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BLAST of mRNA_H-paniculata_contig46995.11696.1 vs. uniprot
Match: A0A1Y1I3M9_KLENI (Protein with Helicase_C domain n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I3M9_KLENI)

HSP 1 Score: 143 bits (361), Expect = 1.690e-37
Identity = 71/110 (64.55%), Postives = 86/110 (78.18%), Query Frame = 1 
Query:    1 QELLPKARVVYCSATGVTDIGNLAYATRLGLWGPHAPFGSFKEFKESMEKRGLGALEMLAMELKAKGSYVSRGLGWKGAEFETCEAQLSPSTVVMYDEAVEFWMELRKEL 330
            QELLPKARVVYCSATGV++IG+ AY TR+GLWGP  PF  F+ F ESM+KRGLG LEMLAME+KA G YVSRGL +K AEF   E +LS   + +YD+AV  W +LR++L
Sbjct:  271 QELLPKARVVYCSATGVSEIGHCAYMTRMGLWGPGTPFKDFEYFVESMKKRGLGFLEMLAMEMKASGFYVSRGLSFKQAEFLELECKLSEHQMQVYDDAVRLWSKLREDL 380
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BLAST of mRNA_H-paniculata_contig46995.11696.1 vs. uniprot
Match: A0A1S3IHU9_LINUN (protein FORGETTER 1 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3IHU9_LINUN)

HSP 1 Score: 138 bits (347), Expect = 2.130e-36
Identity = 68/110 (61.82%), Postives = 80/110 (72.73%), Query Frame = 1 
Query:    1 QELLPKARVVYCSATGVTDIGNLAYATRLGLWGPHAPFGSFKEFKESMEKRGLGALEMLAMELKAKGSYVSRGLGWKGAEFETCEAQLSPSTVVMYDEAVEFWMELRKEL 330
            Q LLPKARVVYCSATGVTD+ N+A+  RLGLWG   PF SF+ F ES+ ++GLG  EMLAME+K+ G YVSRGL +K AEF T EA L+   + MYD A   W ELRK L
Sbjct:  324 QRLLPKARVVYCSATGVTDVKNMAFMERLGLWGDGMPFKSFEHFMESVHRKGLGVAEMLAMEMKSSGMYVSRGLSFKQAEFMTVEASLTEEQIQMYDTAAHVWNELRKAL 433
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BLAST of mRNA_H-paniculata_contig46995.11696.1 vs. uniprot
Match: UPI001EAF937F (protein FORGETTER 1-like isoform X1 n=4 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EAF937F)

HSP 1 Score: 138 bits (348), Expect = 2.540e-36
Identity = 68/110 (61.82%), Postives = 82/110 (74.55%), Query Frame = 1 
Query:    1 QELLPKARVVYCSATGVTDIGNLAYATRLGLWGPHAPFGSFKEFKESMEKRGLGALEMLAMELKAKGSYVSRGLGWKGAEFETCEAQLSPSTVVMYDEAVEFWMELRKEL 330
            Q +LPKARVVYCSATGVTD+ N+A+  RLGLWG  APF +F+ F ES++K+GLG  EMLAME+KA G YVSRGL +K AEF T +++LS     MYD A   W ELRK L
Sbjct:  298 QRMLPKARVVYCSATGVTDVKNMAFMERLGLWGDGAPFKTFEHFMESVQKKGLGVAEMLAMEMKASGMYVSRGLSFKQAEFVTVQSELSKEHKKMYDAAAHVWNELRKAL 407
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BLAST of mRNA_H-paniculata_contig46995.11696.1 vs. uniprot
Match: UPI00106CDA32 (protein FORGETTER 1-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106CDA32)

HSP 1 Score: 139 bits (351), Expect = 3.760e-36
Identity = 69/110 (62.73%), Postives = 82/110 (74.55%), Query Frame = 1 
Query:    1 QELLPKARVVYCSATGVTDIGNLAYATRLGLWGPHAPFGSFKEFKESMEKRGLGALEMLAMELKAKGSYVSRGLGWKGAEFETCEAQLSPSTVVMYDEAVEFWMELRKEL 330
            Q LLPKARVVYCSATGVTD+ N+A+  RLGLWG   PF SF+ F E + KRGLGALEMLAME+KA G YVSRGL ++ AEF T +A LS   V ++D+A   W EL+K L
Sbjct:  283 QRLLPKARVVYCSATGVTDVKNMAFMERLGLWGDGTPFKSFETFLEGITKRGLGALEMLAMEMKAAGMYVSRGLSFREAEFLTVQAMLSDEQVALFDKAAHLWNELKKSL 392
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BLAST of mRNA_H-paniculata_contig46995.11696.1 vs. uniprot
Match: A0A6S7I364_PARCT (FORGETTER 1-like n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7I364_PARCT)

HSP 1 Score: 138 bits (347), Expect = 6.980e-36
Identity = 68/110 (61.82%), Postives = 82/110 (74.55%), Query Frame = 1 
Query:    1 QELLPKARVVYCSATGVTDIGNLAYATRLGLWGPHAPFGSFKEFKESMEKRGLGALEMLAMELKAKGSYVSRGLGWKGAEFETCEAQLSPSTVVMYDEAVEFWMELRKEL 330
            Q LLPKARVVYCSATGVTD+ N+A+  RLGLWG   PF SF+ F E + KRGLGALEMLAME+KA G YVSRGL ++ AEF T ++ LS   V ++D+A   W EL+K L
Sbjct:  254 QRLLPKARVVYCSATGVTDVKNMAFMERLGLWGDGTPFKSFETFLEGITKRGLGALEMLAMEMKATGMYVSRGLSFREAEFLTVQSLLSEEQVTLFDKAAHIWSELKKSL 363
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BLAST of mRNA_H-paniculata_contig46995.11696.1 vs. uniprot
Match: UPI00201F9852 (protein FORGETTER 1-like isoform X1 n=2 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201F9852)

HSP 1 Score: 138 bits (348), Expect = 9.560e-36
Identity = 68/110 (61.82%), Postives = 82/110 (74.55%), Query Frame = 1 
Query:    1 QELLPKARVVYCSATGVTDIGNLAYATRLGLWGPHAPFGSFKEFKESMEKRGLGALEMLAMELKAKGSYVSRGLGWKGAEFETCEAQLSPSTVVMYDEAVEFWMELRKEL 330
            Q +LPKARVVYCSATGVTD+ N+A+  RLGLWG  APF +F+ F ES++K+GLG  EMLAME+KA G YVSRGL +K AEF T +++LS     MYD A   W ELRK L
Sbjct:  298 QRMLPKARVVYCSATGVTDVKNMAFMERLGLWGDGAPFKTFEHFMESVQKKGLGVAEMLAMEMKASGMYVSRGLSFKQAEFVTVQSELSKEHKKMYDAAAHVWNELRKAL 407
[Close]
BLAST of mRNA_H-paniculata_contig46995.11696.1 vs. uniprot
Match: UPI0009E59F0E (protein strawberry notch homolog 1-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E59F0E)

HSP 1 Score: 125 bits (314), Expect = 3.110e-35
Identity = 62/103 (60.19%), Postives = 73/103 (70.87%), Query Frame = 1 
Query:    1 QELLPKARVVYCSATGVTDIGNLAYATRLGLWGPHAPFGSFKEFKESMEKRGLGALEMLAMELKAKGSYVSRGLGWKGAEFETCEAQLSPSTVVMYDEAVEFW 309
            Q +LPKARVVYCSATGVTD+ N+A+  RLGLWG    F SF  F  S+ KRGLGA EMLAME+KA G YVSRGL ++ AEF   EA L+   + +YD AV  W
Sbjct:    3 QRILPKARVVYCSATGVTDVKNMAFMERLGLWGDGTAFKSFDSFLTSISKRGLGAAEMLAMEMKASGMYVSRGLSFRQAEFVNVEAPLTADQIKVYDTAVHVW 105
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46995.11696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JM72_9PHAE1.770e-5889.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWB6_ECTSI5.470e-5889.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YXT2_9STRA6.310e-4066.36P-loop containing NTP hydrolase pore-1-domain-cont... [more]
A0A1Y1I3M9_KLENI1.690e-3764.55Protein with Helicase_C domain n=1 Tax=Klebsormidi... [more]
A0A1S3IHU9_LINUN2.130e-3661.82protein FORGETTER 1 n=1 Tax=Lingula unguis TaxID=7... [more]
UPI001EAF937F2.540e-3661.82protein FORGETTER 1-like isoform X1 n=4 Tax=Haliot... [more]
UPI00106CDA323.760e-3662.73protein FORGETTER 1-like n=1 Tax=Dendronephthya gi... [more]
A0A6S7I364_PARCT6.980e-3661.82FORGETTER 1-like n=1 Tax=Paramuricea clavata TaxID... [more]
UPI00201F98529.560e-3661.82protein FORGETTER 1-like isoform X1 n=2 Tax=Haliot... [more]
UPI0009E59F0E3.110e-3560.19protein strawberry notch homolog 1-like n=1 Tax=Or... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46995contigH-paniculata_contig46995:204..1321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score205.3
Seed ortholog evalue1.5e-50
Seed eggNOG ortholog2880.D7FWB6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cellular response to interleukin-11
EggNOG OGsKOG1513@1,KOG1513@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size330
Cds size330
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46995.11696.1prot_H-paniculata_contig46995.11696.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig46995 204..1321 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930398.5071187-CDS-H-paniculata_contig46995:203..2641622930398.5071187-CDS-H-paniculata_contig46995:203..264Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46995 204..264 +
1691481273.5292697-CDS-H-paniculata_contig46995:203..2641691481273.5292697-CDS-H-paniculata_contig46995:203..264Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46995 204..264 +
1622930398.5233004-CDS-H-paniculata_contig46995:574..7681622930398.5233004-CDS-H-paniculata_contig46995:574..768Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46995 575..768 +
1691481273.5414133-CDS-H-paniculata_contig46995:574..7681691481273.5414133-CDS-H-paniculata_contig46995:574..768Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46995 575..768 +
1622930398.5365813-CDS-H-paniculata_contig46995:1246..13211622930398.5365813-CDS-H-paniculata_contig46995:1246..1321Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46995 1247..1321 +
1691481273.5509825-CDS-H-paniculata_contig46995:1246..13211691481273.5509825-CDS-H-paniculata_contig46995:1246..1321Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46995 1247..1321 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig46995.11696.1

>prot_H-paniculata_contig46995.11696.1 ID=prot_H-paniculata_contig46995.11696.1|Name=mRNA_H-paniculata_contig46995.11696.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
QELLPKARVVYCSATGVTDIGNLAYATRLGLWGPHAPFGSFKEFKESMEK
RGLGALEMLAMELKAKGSYVSRGLGWKGAEFETCEAQLSPSTVVMYDEAV
EFWMELRKEL
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mRNA from alignment at H-paniculata_contig46995:204..1321+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig46995.11696.1 ID=mRNA_H-paniculata_contig46995.11696.1|Name=mRNA_H-paniculata_contig46995.11696.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1118bp|location=Sequence derived from alignment at H-paniculata_contig46995:204..1321+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGAACTGCTTCCCAAGGCGAGGGTAGTGTATTGCTCAGCAACGGGTGT
CACAGATATCGGTGAGCCGGCCGTAGGCATGGCGTCATTACGTAGTCCAG
ATCGAGTTTGGGACAAGAAAATTGCCAAGTATGGTGGCACCATAGGTGCA
ATGCAATAGGCGCAGTAGGTATGCGGGACAGCCAGAACGTTTGGACAATG
TGGAAGCTTTGGTCATGCTATTGGGGAGTTGGAGGTGATATGTAACGTAC
TGCGTTGTGCAGATTTTGTTGATGTATATCGGAGGCATCTTCAGTCGCAT
CATATTCTTTTTTCCCCGTTCGTTCACGTCTTTAGTGCTCTGTCTACTCG
TTTACTGCTCTGGTGTGGCAGGAAACCTGGCGTATGCCACGAGGCTTGGG
CTGTGGGGGCCACACGCCCCCTTCGGCTCGTTCAAGGAGTTCAAGGAGAG
CATGGAGAAGAGAGGGCTGGGGGCGCTAGAGATGCTTGCGATGGAGCTCA
AAGCCAAGGGGTCCTACGTCAGCCGTGGACTCGGCTGGAAGGGAGCGGAG
TTCGAGACGTGCGAGGTGATCGTGTGTGCAATCAGTCACTGCCCTGTGTC
GGCTAGCTTCTATATGAGTGTGACGGTTGGTTTATGGTGAGACTTGGAGC
TACGGCTCGAGTCAACTTATGCCTACGGTAGTGCTTGTTTGGTTGATCAC
GCGCTGGTGCGCTACGGTATGTCTCCTACGTCGCAGTGCTAGCTTGGGGA
ATAGGTAAATAACTGGAAGTTTGTCCAGAGGCTTGTAAACTTCCAGCCAA
TTGTCAAATCGTGCAGCTGCTGCAAACAGTAATGCAGCAACACGGCTAGA
GCTACCTACCCACAATAACCTTTGGCGCTTCGCTTGTCCTCCCGTGTCGC
GACGTTGCCGCATCAGACATTTATATGCAATAGGCTCAGCAGACTCTGTC
AGCACATGAGGGCGTGTTCGCCAGTCTATGCCGCGTCCGTTTGTATTTTA
GCGTTAAAACACAAGTGTTTTCTGATCTCTGTACAATCAATAGGCTCAGC
TATCCCCTTCGACAGTGGTGATGTATGATGAGGCTGTAGAGTTTTGGATG
GAGTTGAGGAAGGAGTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig46995:204..1321+

>mRNA_H-paniculata_contig46995.11696.1 ID=mRNA_H-paniculata_contig46995.11696.1|Name=mRNA_H-paniculata_contig46995.11696.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig46995:204..1321+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGAACTGCTTCCCAAGGCGAGGGTAGTGTATTGCTCAGCAACGGGTGT
CACAGATATCGCAGGAACTGCTTCCCAAGGCGAGGGTAGTGTATTGCTCA
GCAACGGGTGTCACAGATATCGGAAACCTGGCGTATGCCACGAGGCTTGG
GCTGTGGGGGCCACACGCCCCCTTCGGCTCGTTCAAGGAGTTCAAGGAGA
GCATGGAGAAGAGAGGGCTGGGGGCGCTAGAGATGCTTGCGATGGAGCTC
AAAGCCAAGGGGTCCTACGTCAGCCGTGGACTCGGCTGGAAGGGAGCGGA
GTTCGAGACGTGCGAGGAAACCTGGCGTATGCCACGAGGCTTGGGCTGTG
GGGGCCACACGCCCCCTTCGGCTCGTTCAAGGAGTTCAAGGAGAGCATGG
AGAAGAGAGGGCTGGGGGCGCTAGAGATGCTTGCGATGGAGCTCAAAGCC
AAGGGGTCCTACGTCAGCCGTGGACTCGGCTGGAAGGGAGCGGAGTTCGA
GACGTGCGAGGCTCAGCTATCCCCTTCGACAGTGGTGATGTATGATGAGG
CTGTAGAGTTTTGGATGGAGTTGAGGAAGGAGTTGGCTCAGCTATCCCCT
TCGACAGTGGTGATGTATGATGAGGCTGTAGAGTTTTGGATGGAGTTGAG
GAAGGAGTTG
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