prot_H-paniculata_contig46940.11686.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig46940.11686.1
Unique Name	prot_H-paniculata_contig46940.11686.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	131

Homology

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BLAST of mRNA_H-paniculata_contig46940.11686.1 vs. uniprot
Match: D1J767_ECTSI (50S ribosomal protein L19, chloroplastic n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J767_ECTSI)

HSP 1 Score: 245 bits (625), Expect = 6.410e-82
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0

Query:    1 MNYKRISIVKTFMNNRFIESVEKVYIKKNLKKLFVGDTVKIGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRKSKLYYLRNIIGKAGRLKQRVKKK 130
            MNYKRISIVKTFMNNRFIESVEKVYIKKNLKKLFVGDTVKIGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRKSKLYYLRNIIGKAGRLKQRVKKK
Sbjct:    1 MNYKRISIVKTFMNNRFIESVEKVYIKKNLKKLFVGDTVKIGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRKSKLYYLRNIIGKAGRLKQRVKKK 130

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BLAST of mRNA_H-paniculata_contig46940.11686.1 vs. uniprot
Match: A0A1I9LVW4_9PHAE (50S ribosomal protein L19, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVW4_9PHAE)

HSP 1 Score: 220 bits (560), Expect = 6.820e-72
Identity = 110/130 (84.62%), Postives = 124/130 (95.38%), Query Frame = 0

Query:    1 MNYKRISIVKTFMNNRFIESVEKVYIKKNLKKLFVGDTVKIGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRKSKLYYLRNIIGKAGRLKQRVKKK 130
            MN++ +  +K F+NNRFIESVEKV+IKKNLKKLFVGDTVK+GVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIG+ERAFLVNSPK ASIE++KS+R+R+SKLYYLRNIIGKAGRLK+R KKK
Sbjct:    9 MNFQNLMAIKIFINNRFIESVEKVHIKKNLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGVERAFLVNSPKFASIEVIKSSRIRRSKLYYLRNIIGKAGRLKERFKKK 138

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BLAST of mRNA_H-paniculata_contig46940.11686.1 vs. uniprot
Match: A0A6B7EVN0_9PHAE (50S ribosomal protein L19 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EVN0_9PHAE)

HSP 1 Score: 212 bits (539), Expect = 8.320e-69
Identity = 108/130 (83.08%), Postives = 121/130 (93.08%), Query Frame = 0

Query:    1 MNYKRISIVKTFMNNRFIESVEKVYIKKNLKKLFVGDTVKIGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRKSKLYYLRNIIGKAGRLKQRVKKK 130
            M++  +  +K FMNNRFI+SVEKV++KK+LKKLFVGDTVK+GVFVEEGNKERVQFYEGIILAKSKSCINFTIS+RKVFQGIG+ERAFLVNSPK ASIE+LKS+RV KSKLYYLRNIIGKAGRLKQR  KK
Sbjct:    1 MSFTNLIPIKKFMNNRFIKSVEKVHMKKDLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISIRKVFQGIGVERAFLVNSPKFASIEVLKSSRVSKSKLYYLRNIIGKAGRLKQRFNKK 130

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BLAST of mRNA_H-paniculata_contig46940.11686.1 vs. uniprot
Match: A0A7T8JK70_SCYLO (50S ribosomal protein L19, chloroplastic n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8JK70_SCYLO)

HSP 1 Score: 201 bits (512), Expect = 1.950e-64
Identity = 102/130 (78.46%), Postives = 119/130 (91.54%), Query Frame = 0

Query:    1 MNYKRISIVKTFMNNRFIESVEKVYIKKNLKKLFVGDTVKIGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRKSKLYYLRNIIGKAGRLKQRVKKK 130
            M+++ +  ++ FMNN+ IESVE+V++K+NLK+LFVGDTVK+G+ VEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIG+ERAFLVNSPK  SIE+LKSARV KSKLYYLRNIIGKAGRLKQ  KK+
Sbjct:   19 MSFRSLVTLERFMNNKLIESVEQVHMKENLKELFVGDTVKVGISVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGVERAFLVNSPKFVSIEVLKSARVSKSKLYYLRNIIGKAGRLKQSFKKR 148

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BLAST of mRNA_H-paniculata_contig46940.11686.1 vs. uniprot
Match: A0A0R6LUN6_UNDPI (50S ribosomal protein L19, chloroplastic n=25 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUN6_UNDPI)

HSP 1 Score: 168 bits (425), Expect = 1.820e-51
Identity = 84/121 (69.42%), Postives = 106/121 (87.60%), Query Frame = 0

Query:   11 TFMNNR-FIESVEKVYIKKNLKKLFVGDTVKIGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRKSKLYYLRNIIGKAGRLKQRVKKK 130
            TF+N++  I+SVE V+IKKNL K+FVGDTVKIGVF++EGNKER+Q+Y+GIIL K+ S IN TISVRKVFQGIG+ER FL++SPK  SIE++KS+RVR+SKLYYLR+I+GK  RLKQR + K
Sbjct:    8 TFLNDKELIDSVESVHIKKNLSKIFVGDTVKIGVFIKEGNKERIQYYQGIILGKNNSGINLTISVRKVFQGIGVERNFLIHSPKFESIEVIKSSRVRRSKLYYLRSIVGKGSRLKQRFRTK 128

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BLAST of mRNA_H-paniculata_contig46940.11686.1 vs. uniprot
Match: A0A8F0JYX3_9PHAE (Ribosomal protein L19 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JYX3_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 7.880e-51
Identity = 85/130 (65.38%), Postives = 107/130 (82.31%), Query Frame = 0

Query:    1 MNYKRISIVKTFMNNRFIESVEKVYIKKNLKKLFVGDTVKIGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRKSKLYYLRNIIGKAGRLKQRVKKK 130
            +  KR S++ T    + ++SVE  Y KKNL ++FVGDT+K+GVF++EGNKERVQ+Y+GIIL K+ S IN TISVRKVFQGIG+ER FLV+SPKL SIE++KS+RVR+SKLYYLRNIIGK  RLKQR + K
Sbjct:    4 LKLKRPSVLST---KKIMDSVESAYKKKNLSQIFVGDTIKVGVFIKEGNKERVQYYQGIILGKNNSGINLTISVRKVFQGIGVERKFLVHSPKLESIEVIKSSRVRRSKLYYLRNIIGKGSRLKQRFRTK 130

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BLAST of mRNA_H-paniculata_contig46940.11686.1 vs. uniprot
Match: A0A8F0F7M0_9PHAE (Ribosomal protein L19 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7M0_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 6.140e-48
Identity = 77/115 (66.96%), Postives = 99/115 (86.09%), Query Frame = 0

Query:   16 RFIESVEKVYIKKNLKKLFVGDTVKIGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRKSKLYYLRNIIGKAGRLKQRVKKK 130
            + ++ VE  YIKK++ K+FVGDTVKIGVF++EGNKER+Q+Y+GIIL K+ S +N TISVRKVFQGIG+ER FL++SPK  SIEI+KS+RVR+SKLYYLR+I+GK  RLKQR + K
Sbjct:   16 KIMDFVESTYIKKDVSKIFVGDTVKIGVFIKEGNKERIQYYQGIILGKNNSGVNLTISVRKVFQGIGVERRFLIHSPKFESIEIIKSSRVRRSKLYYLRSIVGKGSRLKQRFRTK 130

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BLAST of mRNA_H-paniculata_contig46940.11686.1 vs. uniprot
Match: A0A141BSB2_9PHAE (50S ribosomal protein L19, chloroplastic n=1 Tax=Sargassum horneri TaxID=74089 RepID=A0A141BSB2_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 8.900e-44
Identity = 78/123 (63.41%), Postives = 96/123 (78.05%), Query Frame = 0

Query:    9 VKTFMNNRFIESVEKVYIKKNLKKLFVGDTVKIGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRKSKLYYLRNIIG-KAGRLKQRVKKK 130
            V +    + +  VE+ YIKKN+ K+FVGDTVKIGV ++EGNKER+Q+Y+GIILAK+ S IN TISVRK+FQGIGIER FL++SPK  S+EI+KSARVR+SKLYYLR     K  RLKQR   K
Sbjct:   12 VLSLSKKKILALVEQTYIKKNIPKVFVGDTVKIGVLIKEGNKERIQYYQGIILAKTNSGINLTISVRKIFQGIGIERKFLIHSPKFESVEIIKSARVRRSKLYYLRKTTTTKGSRLKQRFNTK 134

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BLAST of mRNA_H-paniculata_contig46940.11686.1 vs. uniprot
Match: A0A8F0FAK4_9PHAE (Ribosomal protein L19 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAK4_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 2.250e-43
Identity = 73/117 (62.39%), Postives = 94/117 (80.34%), Query Frame = 0

Query:   14 NNRFIESVEKVYIKKNLKKLFVGDTVKIGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRKSKLYYLRNIIGKAGRLKQRVKKK 130
            + + I  VE+   KK++ K+FVGDTVKIG+ ++EGNKER+Q+Y+GIIL K  S IN  ISVRKVFQGIG+ER FL++SPK  SI ++KS+RVR+SKLYYLRNIIGK  RLK+R + K
Sbjct:   14 SEKIINLVEEAQKKKDIPKIFVGDTVKIGILIKEGNKERIQYYQGIILGKKNSGINLMISVRKVFQGIGVERNFLIHSPKFESITVIKSSRVRRSKLYYLRNIIGKKSRLKERFRNK 130

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BLAST of mRNA_H-paniculata_contig46940.11686.1 vs. uniprot
Match: A0A7S6UA05_9STRA (50S ribosomal protein L19, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6UA05_9STRA)

HSP 1 Score: 147 bits (370), Expect = 3.760e-43
Identity = 76/120 (63.33%), Postives = 94/120 (78.33%), Query Frame = 0

Query:    7 SIVKTFMNNRFIESVEKVYIKKNLKKLFVGDTVKIGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRKSKLYYLRNIIGKAGRLKQR 126
            + V TF  N  I+SVE  Y K +L  LF+GDTVKIGV ++EG KER+Q+Y+GII+AK  + IN TI VR+V QGIG+ER FL++SPKL SIEI +S+RVRKSKLYYLR + GKA RLKQR
Sbjct:    3 NFVVTFNKNSLIQSVEHKYYKSDLPTLFIGDTVKIGVLIKEGTKERIQYYQGIIIAKQNTGINKTIIVRRVLQGIGVERMFLIHSPKLNSIEIKRSSRVRKSKLYYLRGLSGKASRLKQR 122

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig46940.11686.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig46940.11686.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D1J767_ECTSI	6.410e-82	100.00	50S ribosomal protein L19, chloroplastic n=2 Tax=E...	[more]
A0A1I9LVW4_9PHAE	6.820e-72	84.62	50S ribosomal protein L19, chloroplastic n=1 Tax=P...	[more]
A0A6B7EVN0_9PHAE	8.320e-69	83.08	50S ribosomal protein L19 n=1 Tax=Cladosiphon okam...	[more]
A0A7T8JK70_SCYLO	1.950e-64	78.46	50S ribosomal protein L19, chloroplastic n=5 Tax=S...	[more]
A0A0R6LUN6_UNDPI	1.820e-51	69.42	50S ribosomal protein L19, chloroplastic n=25 Tax=...	[more]
A0A8F0JYX3_9PHAE	7.880e-51	65.38	Ribosomal protein L19 n=1 Tax=Chorda asiatica TaxI...	[more]
A0A8F0F7M0_9PHAE	6.140e-48	66.96	Ribosomal protein L19 n=2 Tax=Laminariales TaxID=2...	[more]
A0A141BSB2_9PHAE	8.900e-44	63.41	50S ribosomal protein L19, chloroplastic n=1 Tax=S...	[more]
A0A8F0FAK4_9PHAE	2.250e-43	62.39	Ribosomal protein L19 n=1 Tax=Desmarestia aculeata...	[more]
A0A7S6UA05_9STRA	3.760e-43	63.33	50S ribosomal protein L19, chloroplastic n=1 Tax=S...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001857	Ribosomal protein L19	PRINTS	PR00061	RIBOSOMALL19	coord: 47..76 score: 41.67 coord: 17..46 score: 28.89 coord: 101..126 score: 50.8
IPR001857	Ribosomal protein L19	PIRSF	PIRSF002191	Ribosomal_L19	coord: 2..130 e-value: 4.3E-38 score: 128.2
IPR001857	Ribosomal protein L19	PFAM	PF01245	Ribosomal_L19	coord: 17..126 e-value: 4.2E-35 score: 120.0
IPR001857	Ribosomal protein L19	TIGRFAM	TIGR01024	TIGR01024	coord: 16..126 e-value: 8.2E-35 score: 117.3
IPR001857	Ribosomal protein L19	PANTHER	PTHR15680	RIBOSOMAL PROTEIN L19	coord: 13..127
IPR001857	Ribosomal protein L19	HAMAP	MF_00402	Ribosomal_L19	coord: 15..127 score: 26.805
IPR038657	Ribosomal protein L19 superfamily	GENE3D	2.30.30.790		coord: 13..130 e-value: 5.3E-12 score: 47.6
None	No IPR available	PANTHER	PTHR15680:SF11		coord: 13..127
IPR018257	Ribosomal protein L19, conserved site	PROSITE	PS01015	RIBOSOMAL_L19	coord: 99..114
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 13..129

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig46940	contig	H-paniculata_contig46940:1017..1409 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig46940.11686.1	mRNA_H-paniculata_contig46940.11686.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig46940 1017..1430 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig46940.11686.1 ID=prot_H-paniculata_contig46940.11686.1|Name=mRNA_H-paniculata_contig46940.11686.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=131bp
MNYKRISIVKTFMNNRFIESVEKVYIKKNLKKLFVGDTVKIGVFVEEGNK
ERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEIL
KSARVRKSKLYYLRNIIGKAGRLKQRVKKK*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001857	Ribosomal_L19
IPR038657	L19_sf
IPR018257	Ribosomal_L19_CS
IPR008991	Translation_prot_SH3-like_sf