prot_H-paniculata_contig46940.11685.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig46940.11685.1
Unique Nameprot_H-paniculata_contig46940.11685.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length117
Homology
[Close]
BLAST of mRNA_H-paniculata_contig46940.11685.1 vs. uniprot
Match: D1J766_ECTSI (50S ribosomal protein L20, chloroplastic n=9 Tax=Ectocarpales TaxID=2877 RepID=D1J766_ECTSI)

HSP 1 Score: 205 bits (522), Expect = 1.090e-66
Identity = 108/114 (94.74%), Postives = 113/114 (99.12%), Query Frame = 0 
Query:    1 MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLLYAYNGRKKKKRVFRQLWITRINAAVKNYNLKYNKFIHNLKKSKILLNRKMLSQLAILDPPAFSALVLATK 114
            MVRVKRGNVARKRRNKILKLAKGFCG+HSSLFRIANQQVIKSLLYAY+GRKKKKRVFRQLWITRINAAVK+YNLKYN+FIHNLKKSKI+LNRKMLSQLAILDPPAFSALV ATK
Sbjct:    1 MVRVKRGNVARKRRNKILKLAKGFCGSHSSLFRIANQQVIKSLLYAYSGRKKKKRVFRQLWITRINAAVKHYNLKYNEFIHNLKKSKIILNRKMLSQLAILDPPAFSALVFATK 114
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BLAST of mRNA_H-paniculata_contig46940.11685.1 vs. uniprot
Match: A0A0R6M3F2_UNDPI (50S ribosomal protein L20, chloroplastic n=26 Tax=Laminariales TaxID=2886 RepID=A0A0R6M3F2_UNDPI)

HSP 1 Score: 191 bits (485), Expect = 4.800e-61
Identity = 99/114 (86.84%), Postives = 108/114 (94.74%), Query Frame = 0 
Query:    1 MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLLYAYNGRKKKKRVFRQLWITRINAAVKNYNLKYNKFIHNLKKSKILLNRKMLSQLAILDPPAFSALVLATK 114
            MVRVKRGNVAR RRNKILKLAKGFCGAHSSLFR+ANQQVIKSL+YAY GRK+KKR+FRQLWITRINAAV NYNLKY+KFIHNLK+SKILLNRKMLSQLAILDP AFS++V  T+
Sbjct:    1 MVRVKRGNVARNRRNKILKLAKGFCGAHSSLFRVANQQVIKSLIYAYRGRKEKKRIFRQLWITRINAAVSNYNLKYSKFIHNLKRSKILLNRKMLSQLAILDPSAFSSIVKLTQ 114
[Close]
BLAST of mRNA_H-paniculata_contig46940.11685.1 vs. uniprot
Match: A0A8F0JZA2_9PHAE (50S ribosomal protein L20 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0JZA2_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 7.960e-60
Identity = 98/114 (85.96%), Postives = 107/114 (93.86%), Query Frame = 0 
Query:    1 MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLLYAYNGRKKKKRVFRQLWITRINAAVKNYNLKYNKFIHNLKKSKILLNRKMLSQLAILDPPAFSALVLATK 114
            MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSL+YAY GRK+KKR+FRQLWITRINAA   YNL Y++FIHNLK++K+LLNRKMLSQLAILDPPAFS +V ATK
Sbjct:    1 MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLIYAYRGRKEKKRMFRQLWITRINAAASYYNLNYSRFIHNLKQAKVLLNRKMLSQLAILDPPAFSFIVEATK 114
[Close]
BLAST of mRNA_H-paniculata_contig46940.11685.1 vs. uniprot
Match: A0A8F0FB19_9PHAE (50S ribosomal protein L20 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FB19_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 1.320e-58
Identity = 96/114 (84.21%), Postives = 107/114 (93.86%), Query Frame = 0 
Query:    1 MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLLYAYNGRKKKKRVFRQLWITRINAAVKNYNLKYNKFIHNLKKSKILLNRKMLSQLAILDPPAFSALVLATK 114
            MVRVKRGNVAR RRNKIL+LAKGFCGAHSSLFRIANQQVIKSL+Y+Y GRK+KKR+FRQLWITRINAA + YNLKY++FIHNLK+SK+LLNRKMLSQLAILDP AFS +V ATK
Sbjct:    1 MVRVKRGNVARNRRNKILRLAKGFCGAHSSLFRIANQQVIKSLVYSYIGRKEKKRIFRQLWITRINAAARQYNLKYSRFIHNLKRSKVLLNRKMLSQLAILDPSAFSYIVEATK 114
[Close]
BLAST of mRNA_H-paniculata_contig46940.11685.1 vs. uniprot
Match: D1GJI6_FUCVE (50S ribosomal protein L20, chloroplastic n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJI6_FUCVE)

HSP 1 Score: 170 bits (430), Expect = 1.160e-52
Identity = 90/114 (78.95%), Postives = 104/114 (91.23%), Query Frame = 0 
Query:    1 MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLLYAYNGRKKKKRVFRQLWITRINAAVKNYNLKYNKFIHNLKKSKILLNRKMLSQLAILDPPAFSALVLATK 114
            MVRVKRGNVARKRRNKILKLAKGF GA SSLFRIANQQVIKSL+Y+Y GRK+KKR+FR+LWITRIN++ + YN+KYN+FI+ LK+SKILLNRKMLSQLAILDP AFS ++  TK
Sbjct:    1 MVRVKRGNVARKRRNKILKLAKGFNGAQSSLFRIANQQVIKSLVYSYIGRKEKKRIFRKLWITRINSSTRQYNIKYNRFIYKLKQSKILLNRKMLSQLAILDPLAFSNIIEITK 114
[Close]
BLAST of mRNA_H-paniculata_contig46940.11685.1 vs. uniprot
Match: A0A8E5XRD5_9PHAE (50S ribosomal protein L20, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRD5_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 6.720e-52
Identity = 87/110 (79.09%), Postives = 98/110 (89.09%), Query Frame = 0 
Query:    1 MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLLYAYNGRKKKKRVFRQLWITRINAAVKNYNLKYNKFIHNLKKSKILLNRKMLSQLAILDPPAFSALV 110
            MVR+KRGNVARKRR KIL LAKGFCG+HSSLFR+ANQQV+KSLLYAY GRK+KKR+FRQLWITRIN AV+NY   Y+KF H+LK S ILLNRKMLSQLAI+DP  FS+LV
Sbjct:    1 MVRIKRGNVARKRRKKILNLAKGFCGSHSSLFRVANQQVLKSLLYAYIGRKEKKRMFRQLWITRINGAVRNYGTNYSKFTHSLKVSNILLNRKMLSQLAIIDPSGFSSLV 110
[Close]
BLAST of mRNA_H-paniculata_contig46940.11685.1 vs. uniprot
Match: A0A8F0JXR7_9PHAE (50S ribosomal protein L20 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JXR7_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 1.270e-51
Identity = 85/116 (73.28%), Postives = 103/116 (88.79%), Query Frame = 0 
Query:    1 MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLLYAYNGRKKKKRVFRQLWITRINAAVKNYNLKYNKFIHNLKKSKILLNRKMLSQLAILDPPAFSALVLATKIN 116
            MVRVKRGNVARKRRNKIL  AKGFCGAHSS FR+ANQQVIKS LY Y GRKKKKR+FRQLWITRINAA + YN++Y++FI+ +K+++ILLNRKMLSQLAILDP +FS++V+ + + 
Sbjct:    1 MVRVKRGNVARKRRNKILNFAKGFCGAHSSSFRVANQQVIKSFLYGYIGRKKKKRIFRQLWITRINAASRQYNIRYSRFIYFMKQARILLNRKMLSQLAILDPFSFSSMVVVSSLT 116
[Close]
BLAST of mRNA_H-paniculata_contig46940.11685.1 vs. uniprot
Match: A0A1N7TJI7_9PHAE (50S ribosomal protein L20 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1N7TJI7_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 7.830e-51
Identity = 89/114 (78.07%), Postives = 101/114 (88.60%), Query Frame = 0 
Query:    1 MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLLYAYNGRKKKKRVFRQLWITRINAAVKNYNLKYNKFIHNLKKSKILLNRKMLSQLAILDPPAFSALVLATK 114
            MVRVKRGNVARKRR KILKLA+GF G  SSLFRIANQQV+KSL+YAY GRKKKKRVFR+LWITRIN++ + YN+KY+ FI+ LK+SKILLNRKMLSQLAILDP AFS L+  TK
Sbjct:    1 MVRVKRGNVARKRRKKILKLAQGFRGPQSSLFRIANQQVMKSLVYAYIGRKKKKRVFRKLWITRINSSTRQYNMKYSHFIYKLKQSKILLNRKMLSQLAILDPSAFSNLIKVTK 114
[Close]
BLAST of mRNA_H-paniculata_contig46940.11685.1 vs. uniprot
Match: A0A7S6U9T3_9STRA (50S ribosomal protein L20, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9T3_9STRA)

HSP 1 Score: 162 bits (411), Expect = 9.130e-50
Identity = 84/110 (76.36%), Postives = 98/110 (89.09%), Query Frame = 0 
Query:    1 MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLLYAYNGRKKKKRVFRQLWITRINAAVKNYNLKYNKFIHNLKKSKILLNRKMLSQLAILDPPAFSALV 110
            MVRVKRGNVARKRR KI+KLAKGFCGAHS LFRIANQQV+KSL+Y+Y GRK+KKR FRQLWI RIN+ V+N+N KY++FIH+LK S IL+NRKMLSQLAI DP +FS L+
Sbjct:    1 MVRVKRGNVARKRRKKIIKLAKGFCGAHSRLFRIANQQVMKSLVYSYRGRKEKKRKFRQLWIVRINSVVRNHNKKYSQFIHDLKTSNILINRKMLSQLAITDPSSFSKLL 110
[Close]
BLAST of mRNA_H-paniculata_contig46940.11685.1 vs. uniprot
Match: A0A2I4Q2E5_9PHAE (50S ribosomal protein L20, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2E5_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 2.150e-48
Identity = 87/114 (76.32%), Postives = 97/114 (85.09%), Query Frame = 0 
Query:    1 MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLLYAYNGRKKKKRVFRQLWITRINAAVKNYNLKYNKFIHNLKKSKILLNRKMLSQLAILDPPAFSALVLATK 114
            MVRVKRGN+ARKRRNKILK AKGF GAHS+ FRIANQQV+KSL Y Y GRK KKRVFRQLWI RINAAVK Y+L Y++FI  LK++ ILLNRKMLSQLAILDP AFS+L+   K
Sbjct:    1 MVRVKRGNIARKRRNKILKRAKGFFGAHSNSFRIANQQVLKSLRYEYVGRKTKKRVFRQLWIIRINAAVKKYDLCYSQFIFKLKQASILLNRKMLSQLAILDPKAFSSLIAIVK 114
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46940.11685.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J766_ECTSI1.090e-6694.7450S ribosomal protein L20, chloroplastic n=9 Tax=E... [more]
A0A0R6M3F2_UNDPI4.800e-6186.8450S ribosomal protein L20, chloroplastic n=26 Tax=... [more]
A0A8F0JZA2_9PHAE7.960e-6085.9650S ribosomal protein L20 n=2 Tax=Laminariales Tax... [more]
A0A8F0FB19_9PHAE1.320e-5884.2150S ribosomal protein L20 n=1 Tax=Desmarestia acul... [more]
D1GJI6_FUCVE1.160e-5278.9550S ribosomal protein L20, chloroplastic n=3 Tax=F... [more]
A0A8E5XRD5_9PHAE6.720e-5279.0950S ribosomal protein L20, chloroplastic n=1 Tax=I... [more]
A0A8F0JXR7_9PHAE1.270e-5173.2850S ribosomal protein L20 n=1 Tax=Protohalopteris ... [more]
A0A1N7TJI7_9PHAE7.830e-5178.0750S ribosomal protein L20 n=1 Tax=Coccophora langs... [more]
A0A7S6U9T3_9STRA9.130e-5076.3650S ribosomal protein L20, chloroplastic n=1 Tax=S... [more]
A0A2I4Q2E5_9PHAE2.150e-4876.3250S ribosomal protein L20, chloroplastic n=1 Tax=D... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005813Ribosomal protein L20PRINTSPR00062RIBOSOMALL20coord: 42..71
score: 54.65
coord: 12..41
score: 53.54
coord: 75..101
score: 50.51
IPR005813Ribosomal protein L20PFAMPF00453Ribosomal_L20coord: 3..109
e-value: 2.2E-46
score: 156.4
IPR005813Ribosomal protein L20TIGRFAMTIGR01032TIGR01032coord: 1..113
e-value: 3.4E-44
score: 147.7
IPR005813Ribosomal protein L20PANTHERPTHR1098639S RIBOSOMAL PROTEIN L20coord: 2..114
IPR005813Ribosomal protein L20PROSITEPS00937RIBOSOMAL_L20coord: 54..70
IPR005813Ribosomal protein L20HAMAPMF_00382Ribosomal_L20coord: 2..115
score: 28.934
NoneNo IPR availableGENE3D1.10.720.90coord: 2..55
e-value: 1.2E-22
score: 81.7
NoneNo IPR availablePANTHERPTHR10986:SF1239S RIBOSOMAL PROTEIN L20, MITOCHONDRIALcoord: 2..114
NoneNo IPR availablePRODOMPD002389coord: 20..70
e-value: 3.0E-16
score: 202.0
IPR035566Ribosomal protein L20, C-terminalGENE3D1.10.1900.20coord: 56..116
e-value: 4.8E-27
score: 95.2
IPR035566Ribosomal protein L20, C-terminalSUPERFAMILY74731Ribosomal protein L20coord: 2..111

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46940contigH-paniculata_contig46940:226..576 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46940.11685.1mRNA_H-paniculata_contig46940.11685.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig46940 226..576 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig46940.11685.1 ID=prot_H-paniculata_contig46940.11685.1|Name=mRNA_H-paniculata_contig46940.11685.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLLYAYNGR
KKKKRVFRQLWITRINAAVKNYNLKYNKFIHNLKKSKILLNRKMLSQLAI
LDPPAFSALVLATKIN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005813Ribosomal_L20
IPR035566Ribosomal_protein_L20_C