mRNA_H-paniculata_contig11821.1169.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11821.1169.1
Unique NamemRNA_H-paniculata_contig11821.1169.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11821.1169.1 vs. uniprot
Match: A0A0V0I6N3_SOLCH (Putative ovule protein n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0I6N3_SOLCH)

HSP 1 Score: 49.3 bits (116), Expect = 6.600e-6
Identity = 31/58 (53.45%), Postives = 36/58 (62.07%), Query Frame = -3 
Query:    2 SPSP*NRNSASL*S*QIGRCG*SLLVESELALNSIGISPRSTARLLIFQHQSVRTSTW 175
            SPSP +R SA        R   +   E++LA  SIGISP +T   LIFQHQSVRTSTW
Sbjct:   26 SPSP-HRFSALPPDYNQYRYASTYFGENQLAPGSIGISPLTTGHPLIFQHQSVRTSTW 82
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11821.1169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0V0I6N3_SOLCH6.600e-653.45Putative ovule protein n=1 Tax=Solanum chacoense T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11821contigH-paniculata_contig11821:2398..2574 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size177
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928893.2578845-CDS-H-paniculata_contig11821:2397..25741622928893.2578845-CDS-H-paniculata_contig11821:2397..2574Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11821 2398..2574 -
1691480659.1432648-CDS-H-paniculata_contig11821:2397..25741691480659.1432648-CDS-H-paniculata_contig11821:2397..2574Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11821 2398..2574 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11821.1169.1prot_H-paniculata_contig11821.1169.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11821 2398..2574 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11821.1169.1

>prot_H-paniculata_contig11821.1169.1 ID=prot_H-paniculata_contig11821.1169.1|Name=mRNA_H-paniculata_contig11821.1169.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=59bp
TKSRSEPTGVGKSTDELCFVVKCLLNLELAHSPPRGINRSGQSVSFKVKH
CFGSMGWDS
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mRNA from alignment at H-paniculata_contig11821:2398..2574-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11821.1169.1 ID=mRNA_H-paniculata_contig11821.1169.1|Name=mRNA_H-paniculata_contig11821.1169.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=177bp|location=Sequence derived from alignment at H-paniculata_contig11821:2398..2574- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCAAGTCGAGGTCCGAACCGACTGGTGTTGGAAAATCAACAGACGAGCT
GTGCTTCGTGGTGAAATGCCTATTGAATTTAGAGCTAGCTCACTCTCCAC
CAAGAGGGATTAACCGCAGCGGCCAATCTGTTAGCTTCAAAGTGAAGCAC
TGTTTCGGTTCTATGGGCTGGGACTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig11821:2398..2574-

>mRNA_H-paniculata_contig11821.1169.1 ID=mRNA_H-paniculata_contig11821.1169.1|Name=mRNA_H-paniculata_contig11821.1169.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at H-paniculata_contig11821:2398..2574- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCAAGTCGAGGTCCGAACCGACTGGTGTTGGAAAATCAACAGACGAGCT
GTGCTTCGTGGTGAAATGCCTATTGAATTTAGAGCTAGCTCACTCTCCAC
CAAGAGGGATTAACCGCAGCGGCCAATCTGTTAGCTTCAAAGTGAAGCAC
TGTTTCGGTTCTATGGGCTGGGACTCGACCAAGTCGAGGTCCGAACCGAC
TGGTGTTGGAAAATCAACAGACGAGCTGTGCTTCGTGGTGAAATGCCTAT
TGAATTTAGAGCTAGCTCACTCTCCACCAAGAGGGATTAACCGCAGCGGC
CAATCTGTTAGCTTCAAAGTGAAGCACTGTTTCGGTTCTATGGGCTGGGA
CTCG
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