mRNA_H-paniculata_contig4689.11676.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4689.11676.1
Unique NamemRNA_H-paniculata_contig4689.11676.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4689.11676.1 vs. uniprot
Match: D8LJ29_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ29_ECTSI)

HSP 1 Score: 279 bits (713), Expect = 1.420e-86
Identity = 129/227 (56.83%), Postives = 165/227 (72.69%), Query Frame = 2 
Query:    2 IGFVLEGMTIRNCGGECVRLRNFVTNSRILDNTIDYCGLYDYRFSDGGENGEAIYVGTSSNQW--------TDGPDGSNHNLISGNVMKPFGNECVDVKEGATGNVIQNNQCAEQLDPDSGCYGSRGSGNVFRYNTGANCVGAGIRLGGWEVDGITYGTENEVYDNRFETTGAGSIAARQAPQGIVCGNTCDQGSGDCEVLGEDESIMVTWNQGCPARLPAVPFIDD 658
            IG V++G+ I+NCG EC+R+RNFVTN+ I +N I+ CG+YD+RF   G+ GEAIY+GTSSNQW        T+GPDGSN+NL++GN + P GNECVD+KEGAT NV++ N+C +Q D +SGCY SRG+ N FRYNT   C+GAGIRLGG  +DG  YG +N VY N F  T AGSI +R  PQG++C N+C  G       G+DE I  +W+QGCPA  P+VPFIDD
Sbjct:   14 IGTVIDGLKIQNCGMECIRMRNFVTNAVIQNNDIENCGIYDFRFQFDGKIGEAIYIGTSSNQWEDGTGDRVTNGPDGSNYNLVTGNELVPRGNECVDIKEGATMNVVEYNECEDQRDAESGCYDSRGNENTFRYNTAIQCLGAGIRLGGHTIDGFVYGVDNHVYGNEFLETEAGSIKSRVEPQGVICDNSCADGECGVSEEGDDEEIEGSWDQGCPASFPSVPFIDD 240
[Close]
BLAST of mRNA_H-paniculata_contig4689.11676.1 vs. uniprot
Match: D8LJ42_ECTSI (FirrV-1-B30 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ42_ECTSI)

HSP 1 Score: 290 bits (741), Expect = 4.060e-86
Identity = 133/227 (58.59%), Postives = 169/227 (74.45%), Query Frame = 2 
Query:    2 IGFVLEGMTIRNCGGECVRLRNFVTNSRILDNTIDYCGLYDYRFSDGGENGEAIYVGTSSNQWTDG--------PDGSNHNLISGNVMKPFGNECVDVKEGATGNVIQNNQCAEQLDPDSGCYGSRGSGNVFRYNTGANCVGAGIRLGGWEVDGITYGTENEVYDNRFETTGAGSIAARQAPQGIVCGNTCDQGSGDCEVLGEDESIMVTWNQGCPARLPAVPFIDD 658
            IG V++ M I+NCG EC+R+RNFVTN+ I+DN I+ CG+YDYR++  G+ GEAIY+GTSSNQW DG        PDG N+NL++GN + P GNECVD+KEGAT NV++ N C +Q D +SGCY SRG+ N FRYNT  NC+G GIRLGG E+DGITYG +N VY N F  TG GSI AR+ PQG++C N+C+ G  D    G+DE I  +W+Q CP+ LP+VPFIDD
Sbjct:  209 IGTVIDSMKIQNCGMECIRMRNFVTNTVIIDNDIEDCGIYDYRYTFDGKVGEAIYIGTSSNQWADGADGRVTNGPDGCNYNLVTGNKLVPRGNECVDIKEGATMNVVEYNDCEDQRDVESGCYDSRGNENTFRYNTAENCLGGGIRLGGHEIDGITYGVDNHVYGNSFRETGDGSIKARRDPQGVICENSCEDGDCDVSEEGDDEEIEDSWDQECPSSLPSVPFIDD 435
[Close]
BLAST of mRNA_H-paniculata_contig4689.11676.1 vs. uniprot
Match: A0A6H5K1D2_9PHAE (Beta_helix domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1D2_9PHAE)

HSP 1 Score: 276 bits (705), Expect = 1.070e-82
Identity = 130/228 (57.02%), Postives = 168/228 (73.68%), Query Frame = 2 
Query:    2 IGFVLEGMTIRNCGGECVRLRNFVTNSRILDNTIDYCGLYDYRFSDGGENGEAIYVGTSSNQW--------TDGPDGSNHNLISGNVMKPFGNECVDVKEGATGNVIQNNQCAEQLDPDSGCYGSRGSGNVFRYNTGANCVGAGIRLGGWEVDGITYGTENEVYDNRFETTGAGSIAARQAPQGIVCGNTCDQGSGDCEVLGE-DESIMVTWNQGCPARLPAVPFIDD 658
            IG V++G+ I+NCG EC+R+RNFVTN+ I +N I+ CG+YD+RF   G+ GEAIY+GTSSNQW        T+GPDGSN+NL++GN + P GNECVD+KEGAT NV++ N+C +Q D +SGCY SRG+ N FRYNT   C+GAGIRLGG  +DG  YG +N VY N F  T AGSI +R  PQG++C N+C   +G+C V  E DE I  +W+QGCP+  P+VPFIDD
Sbjct:  163 IGTVIDGLKIQNCGMECIRMRNFVTNAVIQNNDIENCGIYDFRFQFDGKIGEAIYIGTSSNQWEDGTGDRVTNGPDGSNYNLVTGNKLVPRGNECVDIKEGATMNVVEYNECEDQRDAESGCYDSRGNENTFRYNTAVQCLGAGIRLGGHTIDGFVYGVDNHVYGNEFLETEAGSIKSRVEPQGVICDNSC--ANGECGVSEEGDEEIEGSWDQGCPSSFPSVPFIDD 388
[Close]
BLAST of mRNA_H-paniculata_contig4689.11676.1 vs. uniprot
Match: D7FXR8_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR8_ECTSI)

HSP 1 Score: 256 bits (655), Expect = 3.830e-75
Identity = 113/198 (57.07%), Postives = 148/198 (74.75%), Query Frame = 2 
Query:    5 GFVLEGMTIRNCGGECVRLRNFVTNSRILDNTIDYCGLYDYRFSDGGENGEAIYVGTSSNQWTDGPDGSNHNLISGNVMKPFGNECVDVKEGATGNVIQNNQCAEQLDPDSGCYGSRGSGNVFRYNTGANCVGAGIRLGGWEVDGITYGTENEVYDNRFETTGAGSIAARQAPQGIVCGNTCDQGSGDCEVLGEDESI 598
            GFV+E M ++NCGGECVRL++ V N++++ NTI  CG++DY F+ G +NGE +Y+GTSS QWT+G D  N NL+SGN +   GNECVD+KEGA+GNVI++N C+EQLD +SGCY SRG GN FRYN G +C+GAG+RLGGWEVDG  YG  N VY N F   G G++      QG +CGNTC+ GS  C ++GED+ +
Sbjct:  156 GFVMEDMIVQNCGGECVRLKDSVINAQVMGNTISNCGVHDYMFNSGDKNGEGVYIGTSSTQWTNGEDTCNDNLVSGNRISTSGNECVDIKEGASGNVIEDNICSEQLDAESGCYDSRGDGNTFRYNVGTDCMGAGVRLGGWEVDGHQYGVGNSVYGNDFNAVGEGALKVLVGEQGDICGNTCEDGS--CSLVGEDDDV 351
[Close]
BLAST of mRNA_H-paniculata_contig4689.11676.1 vs. uniprot
Match: D7FXR9_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR9_ECTSI)

HSP 1 Score: 248 bits (632), Expect = 1.030e-73
Identity = 109/197 (55.33%), Postives = 145/197 (73.60%), Query Frame = 2 
Query:    5 GFVLEGMTIRNCGGECVRLRNFVTNSRILDNTIDYCGLYDYRFSDGGENGEAIYVGTSSNQWTDGPDGSNHNLISGNVMKPFGNECVDVKEGATGNVIQNNQCAEQLDPDSGCYGSRGSGNVFRYNTGANCVGAGIRLGGWEVDGITYGTENEVYDNRFETTGAGSIAARQAPQGIVCGNTCDQGSGDCEVLGEDES 595
            GFV+E M ++NCGGECVRL++ V N+++  NTI  CG++DY F+   +NGE +Y+GTSS QWT+G D  N N++S N++   GNECVD+KEG++GNVI++N C++QLD +SGCY SRG GN FRYN G+ C GAG+RLGGWEVDG  YG  N VY N F   G G++      QG +CGNTC++GS  C + G+DES
Sbjct:  156 GFVMEDMVVQNCGGECVRLKDSVVNAQVTGNTISNCGVHDYMFNSEDKNGEGVYIGTSSTQWTNGEDTCNGNVVSRNLISTSGNECVDIKEGSSGNVIEDNFCSDQLDAESGCYDSRGDGNTFRYNVGSECTGAGVRLGGWEVDGHQYGVNNSVYGNDFYAVGVGALKVLVGEQGDICGNTCEEGS--CSLTGDDES 350
[Close]
BLAST of mRNA_H-paniculata_contig4689.11676.1 vs. uniprot
Match: A0A6H5KT05_9PHAE (Beta_helix domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KT05_9PHAE)

HSP 1 Score: 236 bits (601), Expect = 9.470e-70
Identity = 101/186 (54.30%), Postives = 138/186 (74.19%), Query Frame = 2 
Query:    5 GFVLEGMTIRNCGGECVRLRNFVTNSRILDNTIDYCGLYDYRFSDGGENGEAIYVGTSSNQWTDGPDGSNHNLISGNVMKPFGNECVDVKEGATGNVIQNNQCAEQLDPDSGCYGSRGSGNVFRYNTGANCVGAGIRLGGWEVDGITYGTENEVYDNRFETTGAGSIAARQAPQGIVCGNTCDQGS 562
            GFV++ + ++NCG ECVRL++F+  + I DN I  CG+ D+ + + G+NGE IYVGTSS QW+DGPD  N N I+GN + P GNECVD+KEG+TG +++ N C+ QLD DSGC+GSRG GNVFRYNT ++C+G G+R+GGWEVDG  YG +N +Y+N F    +G ++    PQG VCGN+C  G+
Sbjct:  129 GFVMQDVYVQNCGDECVRLKSFIVGAVISDNVIQDCGVRDFVYGNSGKNGEGIYVGTSSTQWSDGPDECNDNTITGNTITPNGNECVDIKEGSTGTIVEENTCSGQLDEDSGCFGSRGDGNVFRYNTASDCLGVGVRIGGWEVDGHKYGQDNSIYENSFTRAESGGLSFFALPQGKVCGNSCQGGA 314
[Close]
BLAST of mRNA_H-paniculata_contig4689.11676.1 vs. uniprot
Match: D7FZD2_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZD2_ECTSI)

HSP 1 Score: 236 bits (602), Expect = 1.750e-67
Identity = 111/209 (53.11%), Postives = 148/209 (70.81%), Query Frame = 2 
Query:    5 GFVLEGMTIRNCGGECVRLRNFVTNSRILDNTIDYCGLYDYRFSDGGENGEAIYVGTSSNQWTDGP-DGSNHNLISGNVMKPFGNECVDVKEGATGNVIQNNQCAEQLDPDSGCYGSRGSGNVFRYNTGANCVGAGIRLGGWEVDGITYGTENEVYDNRFETTGAGSIAARQAPQGIVCGNTCDQGSGDCEVLGE--DESIMVTWNQGC 622
            GFV+E M ++NCGGECVRL++ VTN++I  NTI  CG++DY F  G  NG+ + +GTSS++W DG  D   +NL++GNV+    NECVDVKEGA GNVI++N C  QLD +SGCY SRG+ N+FR N G++C+GAG+RLGGWEVDG  YG  N VYDN F   G G++      QG +CGNTC     DC+++G+  D++I  TW+  C
Sbjct:  117 GFVMEEMAVQNCGGECVRLKDGVTNAKIFSNTITNCGIHDYMFESGDMNGQGVCIGTSSDEWPDGEEDVCTNNLVAGNVIDTSANECVDVKEGAYGNVIEDNMCYNQLDINSGCYNSRGNDNIFRNNAGSDCLGAGVRLGGWEVDGFQYGVGNSVYDNDFNDVGFGALKIMVDGQGTICGNTC--AGDDCQLIGDYLDDTID-TWDHAC 322
[Close]
BLAST of mRNA_H-paniculata_contig4689.11676.1 vs. uniprot
Match: UPI00036AEC55 (right-handed parallel beta-helix repeat-containing protein n=1 Tax=Hahella ganghwensis TaxID=286420 RepID=UPI00036AEC55)

HSP 1 Score: 200 bits (508), Expect = 1.750e-55
Identity = 102/195 (52.31%), Postives = 126/195 (64.62%), Query Frame = 2 
Query:    5 GFVLEGMTIRNCGGECVRLRNFVTNSRILDNTIDYCGLYDYRFSDGGENGEAIYVGTSSNQWTDG------PDGSNHNLISGNVMKPFGNECVDVKEGATGNVIQNNQCAEQLDPDSGCYGSRGSGNVFRYNTGANCVGAGIRLGGWEVDGITYGTENEVYDNRFETTGAGSIAARQAPQGIVCGN-TCDQGSGD 568
            GFV+  M+++N GGECVRLR +VT + I DNT   CG+YD++F++GG+NGEAIYVGTSSNQW DG      PD SNHN I  N     GNECVD+KEGA  N+++ N C+ Q DP+S  + SRG  N+FRYN   +  GAG+RLGG  VDG  YG  N+VY N         +    APQ  VCGN T D   GD
Sbjct:  158 GFVMRAMSLKNAGGECVRLRYYVTEAEIFDNTFYNCGVYDFKFNNGGKNGEAIYVGTSSNQWDDGKNPTGGPDPSNHNWIHHNKFLTNGNECVDIKEGAEYNLVEYNICSGQQDPNSAGFDSRGDHNIFRYNVSHDNKGAGVRLGGNTVDGRQYGVNNQVYGNLLYNNAQAGVKLMAAPQEKVCGNPTSDNTEGD 352
[Close]
BLAST of mRNA_H-paniculata_contig4689.11676.1 vs. uniprot
Match: A0A1G2MDL9_9BACT (F5/8 type C domain-containing protein n=1 Tax=Candidatus Taylorbacteria bacterium RIFCSPHIGHO2_02_49_25 TaxID=1802305 RepID=A0A1G2MDL9_9BACT)

HSP 1 Score: 191 bits (484), Expect = 2.610e-50
Identity = 94/181 (51.93%), Postives = 117/181 (64.64%), Query Frame = 2 
Query:   23 MTIRNCGGECVRLRNFVTNSRILDNTIDYCGLYDYRFSDGGENGEAIYVGTSSNQWTDG------PDGSNHNLISGNVMKPFGNECVDVKEGATGNVIQNNQCAEQLDPDSGCYGSRGSGNVFRYNTGANCVGAGIRLGGWEVDGITYGTENEVYDNRFETTGAGSIAARQAPQGIVCGNT 547
            MT++N GGEC+RLR F T S I  NTI  CG YD+ F+ GG+NGE IY+GTS+ QW DG      PD +  NL+  N +   GNEC+D+KEGAT N+I+ N C  Q D +SG + SRG GN+FRYN     VG GIRLGG  V+GI YG  N+VY+N       G I  +  PQG +CGNT
Sbjct:    1 MTLKNSGGECLRLRYFATKSEIAYNTIANCGAYDFLFNAGGKNGEGIYIGTSNKQWGDGKNPTNDPDETKDNLVHHNYIDTQGNECIDIKEGATANIIEYNTCRGQKDSESGGFDSRGDGNIFRYNDVRGSVGGGIRLGGASVNGIQYGKNNDVYENTIVDNKNGGIRFQTTPQGKICGNT 181
[Close]
BLAST of mRNA_H-paniculata_contig4689.11676.1 vs. uniprot
Match: UPI001998BEE9 (Right-handed parallel beta-helix repeat-containing protein n=1 Tax=Roseiflexaceae bacterium TaxID=2762507 RepID=UPI001998BEE9)

HSP 1 Score: 184 bits (466), Expect = 2.030e-49
Identity = 98/193 (50.78%), Postives = 121/193 (62.69%), Query Frame = 2 
Query:    5 GFVLEGMTIRNCGGECVRLRNFVTNSRILDNTIDYCGLYDYRFSDGGENGEAIYVGTSSNQWTDG------PDGSNHNLISGNVMKPFGNECVDVKEGATGNVIQNNQCAEQLDPDSGCYGSRGSGNVFRYNTGANCVGAGIRLGGWEVDGITYGTENEVYDNRFETTGAGSIAARQAPQGIVCGNTCDQGSG 565
            G  +  MT RN GGEC+RLR FV NS I  +T   CG+ D+RF  GG+NGEAIY+GT+  Q  DG      PD SN+N I  N     GNECVD+KE AT N+++NN C  Q DP+S  + SRGSGN+FRYNT    VGAG+RLGG   D  T G +N+VY N      AG I  ++APQ  +CGNT +   G
Sbjct:  140 GLKVLNMTFRNGGGECLRLRYFVQNSEIAQSTFLNCGVRDFRFKAGGKNGEAIYIGTAPEQRGDGKNPTTDPDQSNNNWIHHNNFNTQGNECVDIKEAATNNIVENNTCTGQKDPNSAGFDSRGSGNIFRYNTSYGNVGAGVRLGG---DTATDGIDNQVYANILHHNDAGGIKFQRAPQRTICGNTINDNRG 329
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4689.11676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJ29_ECTSI1.420e-8656.83FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D8LJ42_ECTSI4.060e-8658.59FirrV-1-B30 n=2 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5K1D2_9PHAE1.070e-8257.02Beta_helix domain-containing protein n=1 Tax=Ectoc... [more]
D7FXR8_ECTSI3.830e-7557.07FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D7FXR9_ECTSI1.030e-7355.33FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5KT05_9PHAE9.470e-7054.30Beta_helix domain-containing protein n=2 Tax=Ectoc... [more]
D7FZD2_ECTSI1.750e-6753.11FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
UPI00036AEC551.750e-5552.31right-handed parallel beta-helix repeat-containing... [more]
A0A1G2MDL9_9BACT2.610e-5051.93F5/8 type C domain-containing protein n=1 Tax=Cand... [more]
UPI001998BEE92.030e-4950.78Right-handed parallel beta-helix repeat-containing... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4689contigH-paniculata_contig4689:2112..8077 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score191.8
Seed ortholog evalue5.5e-46
Seed eggNOG ortholog1121935.AQXX01000136_gene4114
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Parallel beta-helix repeats
EggNOG OGs1NHJ7@1224,1SHNB@1236,COG3420@1,COG3420@2
COG Functional cat.P
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
Exons6
Model size1631
Cds size1080
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4689.11676.1prot_H-paniculata_contig4689.11676.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4689 2641..8055 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930396.1382234-UTR-H-paniculata_contig4689:2111..26401622930396.1382234-UTR-H-paniculata_contig4689:2111..2640Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4689 2112..2640 -
1691481272.5664454-UTR-H-paniculata_contig4689:2111..26401691481272.5664454-UTR-H-paniculata_contig4689:2111..2640Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4689 2112..2640 -
1622930396.282965-UTR-H-paniculata_contig4689:8055..80771622930396.282965-UTR-H-paniculata_contig4689:8055..8077Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4689 8056..8077 -
1691481272.637561-UTR-H-paniculata_contig4689:8055..80771691481272.637561-UTR-H-paniculata_contig4689:8055..8077Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4689 8056..8077 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930396.185803-CDS-H-paniculata_contig4689:2640..31601622930396.185803-CDS-H-paniculata_contig4689:2640..3160Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4689 2641..3160 -
1691481272.581158-CDS-H-paniculata_contig4689:2640..31601691481272.581158-CDS-H-paniculata_contig4689:2640..3160Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4689 2641..3160 -
1622930396.203971-CDS-H-paniculata_contig4689:4694..48131622930396.203971-CDS-H-paniculata_contig4689:4694..4813Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4689 4695..4813 -
1691481272.5916224-CDS-H-paniculata_contig4689:4694..48131691481272.5916224-CDS-H-paniculata_contig4689:4694..4813Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4689 4695..4813 -
1622930396.2239604-CDS-H-paniculata_contig4689:5508..55961622930396.2239604-CDS-H-paniculata_contig4689:5508..5596Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4689 5509..5596 -
1691481272.60224-CDS-H-paniculata_contig4689:5508..55961691481272.60224-CDS-H-paniculata_contig4689:5508..5596Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4689 5509..5596 -
1622930396.2367666-CDS-H-paniculata_contig4689:7024..72121622930396.2367666-CDS-H-paniculata_contig4689:7024..7212Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4689 7025..7212 -
1691481272.610053-CDS-H-paniculata_contig4689:7024..72121691481272.610053-CDS-H-paniculata_contig4689:7024..7212Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4689 7025..7212 -
1622930396.250801-CDS-H-paniculata_contig4689:7455..76001622930396.250801-CDS-H-paniculata_contig4689:7455..7600Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4689 7456..7600 -
1691481272.618126-CDS-H-paniculata_contig4689:7455..76001691481272.618126-CDS-H-paniculata_contig4689:7455..7600Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4689 7456..7600 -
1622930396.2661815-CDS-H-paniculata_contig4689:8035..80551622930396.2661815-CDS-H-paniculata_contig4689:8035..8055Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4689 8036..8055 -
1691481272.627887-CDS-H-paniculata_contig4689:8035..80551691481272.627887-CDS-H-paniculata_contig4689:8035..8055Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4689 8036..8055 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4689.11676.1

>prot_H-paniculata_contig4689.11676.1 ID=prot_H-paniculata_contig4689.11676.1|Name=mRNA_H-paniculata_contig4689.11676.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=360bp
MTIRNCGGECVRLRNFVTNSRILDNTIDYCGLYDYRFSDGGENGEAIYVG
TSSNQWTDGPDGSNHNLISGNVMKPFGNECVDVKEGATGNVIQNNQCAEQ
LDPDSGCYGSRGSGNVFRYNTGANCVGAGIRLGGWEVDGITYGTENEVYD
NRFETTGAGSIAARQAPQGIVCGNTCDQGSGDCEVLGEDESIMVTWNQGC
PARLPAVPFIDDENYIEPTFTTSSTTEEATTQSSEEDDSSSTSSSSTEES
TTEDTDDENSSSTTTLTSEESTSQDSDDDDSSSTTSSSTEESTTEDSDDD
DSSSTTTLPTEESTPHDSADDDSSSSTTTSTREESTIQEEEEVSNTQGRH
GRRYRPGHV*
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mRNA from alignment at H-paniculata_contig4689:2112..8077-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4689.11676.1 ID=mRNA_H-paniculata_contig4689.11676.1|Name=mRNA_H-paniculata_contig4689.11676.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5966bp|location=Sequence derived from alignment at H-paniculata_contig4689:2112..8077- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATTGGCTTTGTCCTGGAAGGAATGACCATCAGGAACTGCGGGTGCGCTA
CTATACTGCAAATGGTTTCGTCAGAACGGAAAATGCTCTATTGGTATTAC
AGATCCACAAAAGTACAGTCCCGAGTGTATTCATCTCTATAGCCGATACT
TAGTTGCCGGCACTGGGTGAGCCATGTGTATCGTGCACTACTCAAGTGTA
CATTTCTTGTGGACGCTTAAGGCAACGGTCAATCTTACGATACAGTCACG
CTTAACTCGTAACGTGTGACTCCAATGGGATCTGTGCTGCAGAGGCAATC
GGAAATCGAAGAAAAACAAGCGTCTCCAACCATGGATACATGAATCCTAA
ATGGACCAATCGTTCGCGTGTTGAAAGGCTCACCATGCCGTAAAACGAAT
ACGGTGCTAATCCCGACGTTGAAATTATACCCGTTATTTTTTCCGACTGC
GCTCACGCCCTGACAAACTACTCACAGTGGGGAGTGCGTGCGCCTGAGGA
ACTTCGTGACCAACTCGAGAATCCTGGATAACACCATTGACTACTGTGGC
TTGTACGACTATCGCTTTTCCGACGGTGGAGAAAACGGCGAAGCCATCTA
CGTCGGGACTTCCAGCAATCAGGTGAGGCATCTACGACAACATCAATTTC
ACTCATATCAGATGTAGCGAGAACGATAGGATAGTCGCCAGTCCTCACGT
CTACGACCCACACAGTGTGCTGAATCGGTAGTATGAATTCTAAAATGGAC
CTAATACTCTCAGTAGAGCGGATACACACACACACACTTTCTCTTTCTCT
CCCTCTCGTCCGTAACATCTTCTCTGGTCGGCTCCACCTTTTCGCCGTCC
TTTTGAGCCTGACAGTGGACTGACGGCCCAGACGGCAGCAATCACAACTT
GATCAGCGGCAATGTGATGAAACCCTTCGGGAACGAGTGCGTCGATGTGA
AAGAAGGGGCAACGGGCAACGTCATCCAAAACAATCAATGCGCAGAGCAA
CTGGATCCCGACTCCGGCTGTTACGGCTCGAGAGGCAGCGGAAACGTCTT
CAGGTATATTTTGCTATGATGGGTTTATCCGCTTTTGACTCGAATCAGCC
AAAGAATTCGAACCCGTATCGTTTGTTGACCCCATGAACGGCCAGAGGAA
AACTGTTATATGCTTTCCTTCCCGCGATTGCTCGGGTGGCGTGCGAATCA
ACTCATCATTCTTTTTGCGAGTACTTGTGCGGTGTCTATGTCGCCTTCGA
TGCGTCATTTTGGCAGTTCGCGCTCGGTGCAGCTGAGAGCTGGCACATTT
CCAGATGGTTTCCTGCGAACAGAAACATTATCTAGACCGCTCTAGTTTTC
CGGGTGTCTGTGAGTATTTGGTAGAGGTGTGCACCATCTGAACACTACTT
GATTCACCGGCCCCGTTGTTTTCCTGTGTCTTCGCGAACCCGGTTTATCG
ATACACCAACACGAGATCGGAGTTGTTTCGCCCGGTGCGCCAAGAAAGCG
GGACATCCGTGGCATGGGGGGAAAAGGGGAAAGTGTTGTCGAAAAAGCCA
TGGGGACGTCGAAATCTAGTTTTTTCTCGGGCGTTAGCATGCAGGGCACA
CTCCGAATTTCCGACACGATCACGATACGATCTACCCTGAAAAAGGGTCT
TCTCTCGTCCAACGAACTAGCGGGTTTTCGCATCATCTCACCATGCACGC
GCAGCTCTATGCACCACGACACGAGAAATGGCCCAGAGGACACACATCAA
AGTCTGTATGCAGGGTTCTGCTCCTTGGCAGTAACTTCGTTGGAACGGTG
ACGAAAAATGTAGTTCGATTATACTGGAATCTATTTTGTCGCATTTGGGA
TTGTTGAGATATTTCGGTGCAGTCCACGGCATCATGATATAGTATCAAAG
ATACACAACTATTGCACAACCTTAGCGGTATTATGTCGTACATTTATGGA
TAGTCGGGCGGACAATTGGACCTTGTCCCGGGTCAGAGGGCACCAAAATA
CAGAACAAGATTACATGCTGTCACTGGGTGTTATGATCAAACGGGGTTGC
AGAAACCACACTTCTAGGGTTGAGAAATCCGGAAGCGAATTCGACTATTA
CAGCACGTAGGAAATATCATTATCTGAAAACATCCATTACGATCTCGAAA
CGGCAAAATCGGAAACAAGTCTAAGAAGGTGCCACAGGTATCTTGTGCTG
TCCTTGTAAGCGGGATAGGACCCAATGCTTGTCAGAGTCGGCTCTGTTGA
CCGATAATTCGGCCGACCAGCTAGATCCAATCGACTCGAACCGCCGGTTC
TCGGCGCCTGAAAAAAGCGGTCGGGTTCGTCGTGTACGTATTTAATAAAG
CGTTGTTAGGTTTATTTCTTGTTGCTGCCGGTGCATACCTCCAGCGTTTT
CCAGCATTTGTTCTGAGACACTGCCCTGAAAATTCTCATTTTTGAACCCA
CTTGCTCGTTTTGGACGCGTTTGCTTTTCAGATACAATACCGGTGCCAAC
TGCGTTGGAGCCGGGATTCGCTTGGGAGGATGGGAAGTGGACGGCATCAC
CTACGGTACCGAAAATGAAGTGAGTATGGCGGTCACGTTTTTCGCCGGAG
ATGCATTCTGTGCTTCTGTATTGACGTAGCGTCTCACTGTACCCTACAGC
ACACACACAAAATAGTAACCTGAGAGCAAAGCGAATAGCCAAGAAATTGC
GTGTTCATCAGCGGACGTCGTACGTATCACCAATGAATATAAAATTGTGG
TGGGTGCCGGGGAAACATTTCGCTCGTGCTACTCGTAGTATTTTCTTCGC
CCATATGAATACAGAACAACTAGTGTTCTGGGTGTAAATTCAAGCATTGG
GCTCTTTCAACTGAAGGAGGGGGGCAAATATCCTTTTCGATGACAAATTG
TCTTGATTTAAGTGTAGGATCACTTTGGAACAAGTTGTTTTTGGCCGTTG
TTTGTGGACGTAGCGCGTTCAACTTTACATCTTCGTCACATCCAAGCTGC
TTACTCGATGTCTTTGACACGGTGCAATATTTGTGCCGAAAGCTAGGCCC
GCACTCGAAATATTCAGGCATCTAGCTAAAGAACTAGAGCTTATCATCGT
GTTGCCCCGCCCCGTCAGTTGAAACGGTTCACTCTTGTTGTCATTTATTT
TCCAGTCGACATAGTCACCCAAGATCTAGTATATTTATCGTGTTCGCGTC
CGCCTCAGCAAAGAAAACAGTACTGGCACGCACTCACACGGTCGTTTCTT
CGTTTCCCAATTAGGTGTACGATAACCGCTTTGAAACAACGGGTGCAGGA
TCTATCGCCGCCCGCCAAGCTCCTCAGGGAATCGTATGCGGAAATACGTG
CGACCAAGGAAGCGGCGACTGTGAGGTTTTAGGGTGAGTATTCGGCTCTG
TCAGGCATTGTTTGGTGTAGGGATATTATGCACCCCCGGCCACTCTTGGG
AAAGTTTTCACTGTTACGCCAATCAGATGTTCACAGCTCATACCAATAAT
TTACATCGATAGATCGTCATATCGGTGTACCACTTTCGACCAGTAAATGG
TTCCCAGCTCTGACCCGTACCCTACCACCACACTTTCCACTTCTGACCCA
GGGTACATGCACGCACCGAAGTTAATCGGTCCGAACCGATCGAATTTCAT
CGAATAATATAGGTAGATTCGATGCCTTGCACGGTTCATCGGACCAATCG
AATCGTTCACGGCTCGTACCGCTCATTTGCATCGATACATCGTAGTATAG
GTACACACGTTTACTTTTTACCGGTATAGGGTTTAGAGCTCTGAGGCCAT
CTCTTATGGGGTCGGATTTTTCCAGTCGAAGTTCTCTACTTTCCGATTTC
TCGAAGGGTGTAAAAATCTGATCTTCAATATTTGATTCGCGTATGTTATG
GAGTCGGTCTCCCCGAAGGTGATGTTTATAAAGGTTTACACGCGTAGTAG
TACAAGCGACATAATTCAAAGTTCAAACACACTGTCCAACGTTGGGTTTT
CGAGCACACCATCCAAGATATCACCCTTGTACACGCCACCCTCCAGCACA
CACCTCAGCACACACCTCAGCACACACCTCAGCACACACTCGCATCATCA
TTTACATAGCACAAGACATGAGTGTACTGTCAACTGCGATGCATCTTACG
ACGAGCCCATGCGTGGAATGGGTATGGAGTGAGATGAAGGCCCAGGGGGT
CAAATCGGCTGTCAGCAAGGCACAGTGGATGATACTGCAGAGTGTACCAC
TGTGGTACGCTTGTACTGGCGTGAAGCAGAACGGTGGGACTATGTCTTAG
GCCAAGAGGAACAAGGCCGTGGTTGAATTGTACGATAAGATCGCGGTTTA
CAGCTTCCTCCGCTGGGTGGAGGAAACCCCCGGGCTAGCAGTCCCGCAAG
TTCTACATAGCAGCGGGGGTCACACACTTTGGCTTGTCTGTATCCTCGTG
GTTGTGTATTGCTATAGGCTGTGATATTTCAAAGGTTGGATGAAAAATAT
TAACGCCTTCATATGATTGTACTCCAAGAAATTCGATACGCGAGGGTAAC
TCTGATTTCTGCCAGAAGTCGGGGAACAGAACCCGCTGTGCCTCCCGTCT
CGGATTTCTCCACTCAGGTTTCCAAGAAATCCAACAACATAACATGGGAA
ATCGAATTTCTCGGAGCCGAAAAATTCGAAAATCTGTATTCGACCAGAAA
AATCCGACCCCATAAGAGATGACCTGATATCTACCCTACGGATCTTTGAT
TGGTTATATTTCTCCATGGTTGATCGATCGGATGTGTGGAAACATCCCTT
CTGTGCTACCCTATCGTGTCTTCGCACGGCGTACACCACGACGGTGAATC
AAAATTTACTCGAAGATAACTTTCTCCTCCTCCCCACCCATCCTGTCTCC
TGATCGGGTGGTGATAGGGAAGATGAGAGTATCATGGTCACGTGGAACCA
GGGTTGCCCAGCGCGCCTTCCGGCTGTCCCTTTCATCGATGACGAGAACT
ACATCGAGCCTACCTTCACCACCTCGTCCACCACAGAAGAAGCCACCACC
CAAAGTAGTGAGGAAGATGACAGCTCCAGTACTTCCTCTTCATCTACAGA
AGAGTCCACGACTGAAGACACTGACGACGAGAACAGCTCCAGTACTACCA
CCTTAACTTCGGAAGAATCCACATCTCAAGACAGTGACGACGACGACAGC
TCCAGCACTACCTCTTCATCTACCGAAGAGTCCACGACTGAAGACAGTGA
CGACGACGATAGCTCTAGTACCACTACCTTACCTACGGAAGAGTCCACGC
CTCACGACAGTGCCGACGATGACAGCTCTTCCAGCACTACCACCTCCACC
AGAGAAGAGTCCACTATTCAGGAAGAGGAGGAAGTGTCCAACACCCAAGG
CCGTCACGGGCGTCGCTACCGTCCTGGTCATGTTTGATCGTGGTGGCTAT
AAGCATGACGGGGATGGTGAGTAAAACTCTGTTGCATCTGAAAGCGCCAT
GCCGTTTTGGGGAGTCGAAGCGTCACGGGTGGCACCTGCCGTAGCGAGCG
CGGAGACAACGATAAAAAAAATTATCTCAGTGGTGGTATGATTTAGCAAG
GGAGCAATAACAGCTATGGATAGCACAAGTTCTATTTATTTTACAGGATG
TACTGTTTTTTTACAGATTTGCTGTATATTTTGTATGCAGGTAACAATTC
CAAGAAGCGAACGGTCGTAAATTATTGGGTTTGGGTTTTTGTGGGCACTT
TAGTTACGAAACTTAGATTTGAAGATTTTAAACAGTTGTCAAGTGAGAGA
GTGAGCGAGTGAGCGAGTGGCGATATAACGATTGCGATAAAGAGCGAGGA
CTGGGAACAATTCCGCCAGAAATTGGCGTGTTTGGACACCCCCAGACCAC
GCTTGATGTTGCTGAAGGCACGATTAAGTAAGGTTGAGAATATCAAAGTT
AAATTTGTGATATAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig4689:2112..8077-

>mRNA_H-paniculata_contig4689.11676.1 ID=mRNA_H-paniculata_contig4689.11676.1|Name=mRNA_H-paniculata_contig4689.11676.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2160bp|location=Sequence derived from alignment at H-paniculata_contig4689:2112..8077- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCATCAGGAACTGCGGATGACCATCAGGAACTGCGGTGGGGAGTGC
GTGCGCCTGAGGAACTTCGTGACCAACTCGAGAATCCTGGATAACACCAT
TGACTACTGTGGCTTGTACGACTATCGCTTTTCCGACGGTGGAGAAAACG
GCGAAGCCATCTACGTCGGGACTTCCAGCAATCAGTGGGGAGTGCGTGCG
CCTGAGGAACTTCGTGACCAACTCGAGAATCCTGGATAACACCATTGACT
ACTGTGGCTTGTACGACTATCGCTTTTCCGACGGTGGAGAAAACGGCGAA
GCCATCTACGTCGGGACTTCCAGCAATCAGTGGACTGACGGCCCAGACGG
CAGCAATCACAACTTGATCAGCGGCAATGTGATGAAACCCTTCGGGAACG
AGTGCGTCGATGTGAAAGAAGGGGCAACGGGCAACGTCATCCAAAACAAT
CAATGCGCAGAGCAACTGGATCCCGACTCCGGCTGTTACGGCTCGAGAGG
CAGCGGAAACGTCTTCAGTGGACTGACGGCCCAGACGGCAGCAATCACAA
CTTGATCAGCGGCAATGTGATGAAACCCTTCGGGAACGAGTGCGTCGATG
TGAAAGAAGGGGCAACGGGCAACGTCATCCAAAACAATCAATGCGCAGAG
CAACTGGATCCCGACTCCGGCTGTTACGGCTCGAGAGGCAGCGGAAACGT
CTTCAGATACAATACCGGTGCCAACTGCGTTGGAGCCGGGATTCGCTTGG
GAGGATGGGAAGTGGACGGCATCACCTACGGTACCGAAAATGAAATACAA
TACCGGTGCCAACTGCGTTGGAGCCGGGATTCGCTTGGGAGGATGGGAAG
TGGACGGCATCACCTACGGTACCGAAAATGAAGTGTACGATAACCGCTTT
GAAACAACGGGTGCAGGATCTATCGCCGCCCGCCAAGCTCCTCAGGGAAT
CGTATGCGGAAATACGTGCGACCAAGGAAGCGGCGACTGTGAGGTTTTAG
GGTGTACGATAACCGCTTTGAAACAACGGGTGCAGGATCTATCGCCGCCC
GCCAAGCTCCTCAGGGAATCGTATGCGGAAATACGTGCGACCAAGGAAGC
GGCGACTGTGAGGTTTTAGGGGAAGATGAGAGTATCATGGTCACGTGGAA
CCAGGGTTGCCCAGCGCGCCTTCCGGCTGTCCCTTTCATCGATGACGAGA
ACTACATCGAGCCTACCTTCACCACCTCGTCCACCACAGAAGAAGCCACC
ACCCAAAGTAGTGAGGAAGATGACAGCTCCAGTACTTCCTCTTCATCTAC
AGAAGAGTCCACGACTGAAGACACTGACGACGAGAACAGCTCCAGTACTA
CCACCTTAACTTCGGAAGAATCCACATCTCAAGACAGTGACGACGACGAC
AGCTCCAGCACTACCTCTTCATCTACCGAAGAGTCCACGACTGAAGACAG
TGACGACGACGATAGCTCTAGTACCACTACCTTACCTACGGAAGAGTCCA
CGCCTCACGACAGTGCCGACGATGACAGCTCTTCCAGCACTACCACCTCC
ACCAGAGAAGAGTCCACTATTCAGGAAGAGGAGGAAGTGTCCAACACCCA
AGGCCGTCACGGGCGTCGCTACCGTCCTGGTCATGTTTGAGGAAGATGAG
AGTATCATGGTCACGTGGAACCAGGGTTGCCCAGCGCGCCTTCCGGCTGT
CCCTTTCATCGATGACGAGAACTACATCGAGCCTACCTTCACCACCTCGT
CCACCACAGAAGAAGCCACCACCCAAAGTAGTGAGGAAGATGACAGCTCC
AGTACTTCCTCTTCATCTACAGAAGAGTCCACGACTGAAGACACTGACGA
CGAGAACAGCTCCAGTACTACCACCTTAACTTCGGAAGAATCCACATCTC
AAGACAGTGACGACGACGACAGCTCCAGCACTACCTCTTCATCTACCGAA
GAGTCCACGACTGAAGACAGTGACGACGACGATAGCTCTAGTACCACTAC
CTTACCTACGGAAGAGTCCACGCCTCACGACAGTGCCGACGATGACAGCT
CTTCCAGCACTACCACCTCCACCAGAGAAGAGTCCACTATTCAGGAAGAG
GAGGAAGTGTCCAACACCCAAGGCCGTCACGGGCGTCGCTACCGTCCTGG
TCATGTTTGA
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