mRNA_H-paniculata_contig4682.11662.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4682.11662.1
Unique NamemRNA_H-paniculata_contig4682.11662.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4682.11662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4682contigH-paniculata_contig4682:9713..10273 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size561
Cds size381
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930394.542321-UTR-H-paniculata_contig4682:9712..98921622930394.542321-UTR-H-paniculata_contig4682:9712..9892Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4682 9713..9892 +
1691481271.9007614-UTR-H-paniculata_contig4682:9712..98921691481271.9007614-UTR-H-paniculata_contig4682:9712..9892Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4682 9713..9892 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930394.555841-CDS-H-paniculata_contig4682:9892..102731622930394.555841-CDS-H-paniculata_contig4682:9892..10273Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4682 9893..10273 +
1691481271.9142106-CDS-H-paniculata_contig4682:9892..102731691481271.9142106-CDS-H-paniculata_contig4682:9892..10273Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4682 9893..10273 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4682.11662.1prot_H-paniculata_contig4682.11662.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4682 9893..10273 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4682.11662.1

>prot_H-paniculata_contig4682.11662.1 ID=prot_H-paniculata_contig4682.11662.1|Name=mRNA_H-paniculata_contig4682.11662.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=127bp
MFPSVDYSIRPARPTKTLIRRRGSPLPQKPNQILTTDPQKVTPRHPLTTI
IQDTKASHLLIYSLITTTAPPQHSQATQTSHDTTQYTASPHSETTIHNST
RETCRGLLAAVVHVASADSSSSQTHI*
back to top

mRNA from alignment at H-paniculata_contig4682:9713..10273+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4682.11662.1 ID=mRNA_H-paniculata_contig4682.11662.1|Name=mRNA_H-paniculata_contig4682.11662.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=561bp|location=Sequence derived from alignment at H-paniculata_contig4682:9713..10273+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGTGCACCCTAGCGATTTTGACCCAAAAAATGGTGTAGGCAAAATACA
ATAGCAGAATAGTAACACACCAGACCGTTCTGATTGGTCAGCACCCATCA
TCACTTTCCCTGGTCACAATTCACTCTTAGCACCTTTTTGCGCCAAATGT
ATTCAGAATTGACCCGATTTTGGCCACAATATGTTCCCTTCAGTGGACTA
TTCGATTAGACCAGCCCGACCCACAAAAACACTAATCAGAAGACGTGGAT
CGCCTCTTCCCCAAAAACCAAACCAAATACTGACGACCGATCCACAAAAA
GTGACACCGCGCCATCCTCTAACCACCATAATACAGGACACAAAGGCAAG
CCATCTCCTTATCTATAGCCTCATAACAACAACTGCACCACCACAGCACA
GCCAAGCTACCCAAACTTCACATGACACAACACAGTATACAGCGTCACCA
CACTCTGAGACAACAATCCACAACAGCACTCGCGAAACCTGTCGAGGCCT
CTTAGCTGCAGTCGTCCATGTGGCTTCCGCAGACAGTAGCAGCTCCCAGA
CACACATATGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4682:9713..10273+

>mRNA_H-paniculata_contig4682.11662.1 ID=mRNA_H-paniculata_contig4682.11662.1|Name=mRNA_H-paniculata_contig4682.11662.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at H-paniculata_contig4682:9713..10273+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCCCTTCAGTGGACTATTCGATTAGACCAGCCCGACCCACAAAAAC
ACTAATCAGAAGACGTGGATCGCCTCTTCCCCAAAAACCAAACCAAATAC
TGACGACCGATCCACAAAAAGTGACACCGCGCCATCCTCTAACCACCATA
ATACAGGACACAAAGGCAAGCCATCTCCTTATCTATAGCCTCATAACAAC
AACTGCACCACCACAGCACAGCCAAGCTACCCAAACTTCACATGACACAA
CACAGTATACAGCGTCACCACACTCTGAGACAACAATCCACAACAGCACT
CGCGAAACCTGTCGAGGCCTCTTAGCTGCAGTCGTCCATGTGGCTTCCGC
AGACAGTAGCAGCTCCCAGACACACATATGAATGTTCCCTTCAGTGGACT
ATTCGATTAGACCAGCCCGACCCACAAAAACACTAATCAGAAGACGTGGA
TCGCCTCTTCCCCAAAAACCAAACCAAATACTGACGACCGATCCACAAAA
AGTGACACCGCGCCATCCTCTAACCACCATAATACAGGACACAAAGGCAA
GCCATCTCCTTATCTATAGCCTCATAACAACAACTGCACCACCACAGCAC
AGCCAAGCTACCCAAACTTCACATGACACAACACAGTATACAGCGTCACC
ACACTCTGAGACAACAATCCACAACAGCACTCGCGAAACCTGTCGAGGCC
TCTTAGCTGCAGTCGTCCATGTGGCTTCCGCAGACAGTAGCAGCTCCCAG
ACACACATATGA
back to top