prot_H-paniculata_contig4680.11655.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4680.11655.1
Unique Nameprot_H-paniculata_contig4680.11655.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length454
Homology
BLAST of mRNA_H-paniculata_contig4680.11655.1 vs. uniprot
Match: D7G002_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G002_ECTSI)

HSP 1 Score: 308 bits (789), Expect = 6.780e-98
Identity = 192/389 (49.36%), Postives = 253/389 (65.04%), Query Frame = 0
Query:   10 VAGLFYIGSIFFFVVAIALGAAFIISSSSSNFFKWKIESCNTYGQLLDGDTAGGI--LVNYDLDMTADIGWRQFTVTYLDVGAASAG-CFT-VKEGEKYSIGDYQDNSGSAAGIGMMISWVLGILLAIVAII-VMGMALVDSKVGLSLTTLSKWSILFSLGLVAATTTFWWLIEGKFGNREESLASRLLDLVSDAAARCTDEEVEVYPCFNSEWEMETPGTSLKVGITAMCAYIMAAYLLWMRAPRVDAILAGADDMEAETVTKHIQGVDFVPEKNPVEGDDKSRGKDRRSARTGSRA----PGSTV-GGSATEA--DPMTYALEGG-DEELGSQDDPEDE-VVYQNHQVHPSVVNHSKPNATQVHVDDTMSRQSEAMSRASPVIGGTA 384
            +AG  Y  ++FF +  I LGAAFI +S SS FFKW +E C  +G   +GD  G    ++ YDLD+T DIGWR+FTVT LD G  + G C   +K+G+ YSIGDYQDN+ S AG+GM+ SW LG+L+A+   + ++G      + G+SL  L+KW  LF++GLV ATT FWWL+EGKFG R+ESLA RL   V + A  C++   E   C  + W M+ PG +L +G+TAM A+  A +LLW+ APRVD + +G +++E     K   G + V EK P+  ++K+RGKDRRSA+TG RA    P STV GG   +A  DPMTYALE G DEELGS DD     VVYQNHQVH +V+NHS PN TQ+ VDD  + Q E  + + P  GG A
Sbjct:    7 IAGSMYHMAMFFLLSTIVLGAAFIATSMSSRFFKWSVEGCAAFG---NGDVPGSSERIIVYDLDVTVDIGWREFTVTTLDQGTETIGECLEELKQGQTYSIGDYQDNNASLAGLGMVASWALGVLVALYTFVALLGARHGQRRGGVSLKMLTKWCALFTVGLVTATTVFWWLVEGKFGKRQESLAPRLFQRVEEGAKLCSNSSTEDQ-CNEATWSMDAPGWALSMGVTAMFAFGAATFLLWIIAPRVDHLNSGIEEIEVAEPAKPPVG-NIVMEKTPLP-EEKTRGKDRRSAKTGVRAGGKAPSSTVQGGGPADAGPDPMTYALEEGRDEELGSVDDXXXXXVVYQNHQVHHAVINHSNPNPTQM-VDDQGASQREGRAGSVPKEGGAA 388          
BLAST of mRNA_H-paniculata_contig4680.11655.1 vs. uniprot
Match: A0A6H5KKN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKN1_9PHAE)

HSP 1 Score: 285 bits (730), Expect = 1.960e-88
Identity = 202/456 (44.30%), Postives = 267/456 (58.55%), Query Frame = 0
Query:   10 VAGLFYIGSIFFFVVAIALGAAFIISSSSSNFFKWKIESCNTYGQLLDGDTAGGILVNYDLDMTADIGWRQFTVTYLDVGAASAG-CF-TVKEGEKYSIGDYQDNSGSAAGIGMMISWVLGILLAIVAII-VMGMALVDSKVGLSLTTLSKWSILFSLGLVAATTTFWWLIEGKFGNREESLASRLLDLVSDAAARCTDEEVEVYPCFNSEWEMETPGTSLKVGITAMCAYIMAAYLLWMRAPRVDAILAGADDMEAETVTKHIQGVDFVPEKNPVEGDDKSRGKDRRSARTGSRA----PGSTV-GGSATEA--DPMTYALEGG-DEELGSQDDPEDEVVYQNHQVHPSVV--NHSKPNATQVHVDDTMSRQSEAMSRASPVIGGTANRQRDYNRGYSRGTSGQSY-TSGGNSFDAPSEADAYSETGSSAFYHQGHNQGSQSFVSVGSRDSFDHY 451
            +AG  Y  ++FF +  I LGAAFI +S SS FFKW +E C+ +G +    ++  ++V+++LDMT DIGWR+FTVT LD G  + G C   +K+G+ YSIGDYQDN+ S AG+GM+ SW LG+L+A+   + ++G      + G+SL  L+ W  LF++GLV ATT FWWLIEGKFG R+ESLA RL   V + A  C++   E   C  + W M+ PG +L +G+TAM A+  A +LLW+ APRVD + +G +++E     K   G + V EK P+  ++K+RGKDRRSA+TG RA    P STV GG   +A  DPMTYALE G +++LGS D                    NHS PN TQ+ V+D                          NRGYSR TSG SY T GG SFD  SE D YSET S          G QSF+S  SR   D Y
Sbjct:    7 IAGRMYHMALFFLLSTIVLGAAFIATSMSSRFFKWSVEGCSAFGNVAIPGSSD-LIVDFNLDMTVDIGWREFTVTSLDQGTETMGECLGELKQGQTYSIGDYQDNNASLAGLGMVASWALGVLVALYTFVALLGARHGQRRGGVSLKMLTNWCALFTVGLVTATTVFWWLIEGKFGKRQESLAPRLFQRVEEGAELCSNGSTEDQ-CNEATWSMDAPGWALSMGVTAMFAFGAATFLLWIIAPRVDHLNSGIEEIEVVEPAKPPVG-NIVMEKTPLP-EEKTRGKDRRSAKTGVRAGGKAPSSTVQGGDPADAGPDPMTYALEEGRNKQLGSVDXXXXXXXXXXXXXXXXXXXXNHSNPNPTQM-VEDXXXXXXXXXXXL--------------NRGYSRATSGGSYATGGGRSFDERSEGD-YSETASXXXXXXXXXXG-QSFMSSSSRGESDEY 441          
BLAST of mRNA_H-paniculata_contig4680.11655.1 vs. uniprot
Match: D8LHX3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHX3_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 1.160e-6
Identity = 80/334 (23.95%), Postives = 139/334 (41.62%), Query Frame = 0
Query:    7 GNGVAGLFYIGSIFFFVVAIAL---GAAF---IISSSSSNFFKWKIESCN---------TYGQLL--------DGDTAGG---ILVNYDLDMTADIGWRQFTVTYL--DVGAASAGCFTVKE-------------------GEKYSI-GDYQ----------DNSGSAAGIGMMISWVLGILLAIVAIIVMGMALVD--SKVGLSLTTLSKWSILFSLGLVAATTTFWWLIEGKFGNREESLASRLLDLVSDAA-ARCTDEEVEVYPCFNS--EWEMETPGTSLKVGITAMCAYI-MAAYLLWMRAPRVDAILAGADDMEAETVTKHIQGVDFV 276
            G G A +  +G  FF V  +     G A    +I   S  +F+W+++ C          T GQ +         G TAG     +   D    + IGW++FT   L   VG   A  F                        E Y + G++Q           N GS AG G++   V+    +I+   ++  + +   S   + L  +++ ++L  +G  AA  +FWWLIEG+FG+ +++L + L +++ D       D++      F     W    PG  + +GI  +  ++ M  Y++W +AP V+ +L G+ D     +   +  V+ V
Sbjct:    3 GAGNAAVVAVGRTFFRVAIVGYTLSGLAMFPSVILGVSKGYFEWEMDRCTCVVEQEAAATTGQPIVSSSSLSGTGTTAGASSSCVFGQDFAKVS-IGWKEFTYDKLVHTVGCPIATAFYEANPALDDDDLNLDNERSLYFFDEVYPLDGEFQKTDNPTQADESNGGSEAGGGVVAMQVVLTFFSILTYKMLKASYLSNGSHCSIGLALMTRLNLLVGVGTAAAIVSFWWLIEGRFGDEQKALTTALENILFDECWGETADDDAAGLQTFCPVRPWTFTGPGLPMMLGIFQVGLFLLMTLYMVW-KAPTVEGVLDGSMDPTGVVLKPRVVEVEMV 334          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4680.11655.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G002_ECTSI6.780e-9849.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKN1_9PHAE1.960e-8844.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHX3_ECTSI1.160e-623.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 227..245
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 155..177
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 35..121
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..34
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 144..154
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 122..143
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 178..226
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 246..453
NoneNo IPR availableTMHMMTMhelixcoord: 155..177
NoneNo IPR availableTMHMMTMhelixcoord: 121..143
NoneNo IPR availableTMHMMTMhelixcoord: 12..34
NoneNo IPR availableTMHMMTMhelixcoord: 229..246

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4680contigH-paniculata_contig4680:2080..7233 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4680.11655.1mRNA_H-paniculata_contig4680.11655.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4680 2035..7762 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4680.11655.1 ID=prot_H-paniculata_contig4680.11655.1|Name=mRNA_H-paniculata_contig4680.11655.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=454bp
MGRSSQGNGVAGLFYIGSIFFFVVAIALGAAFIISSSSSNFFKWKIESCN
TYGQLLDGDTAGGILVNYDLDMTADIGWRQFTVTYLDVGAASAGCFTVKE
GEKYSIGDYQDNSGSAAGIGMMISWVLGILLAIVAIIVMGMALVDSKVGL
SLTTLSKWSILFSLGLVAATTTFWWLIEGKFGNREESLASRLLDLVSDAA
ARCTDEEVEVYPCFNSEWEMETPGTSLKVGITAMCAYIMAAYLLWMRAPR
VDAILAGADDMEAETVTKHIQGVDFVPEKNPVEGDDKSRGKDRRSARTGS
RAPGSTVGGSATEADPMTYALEGGDEELGSQDDPEDEVVYQNHQVHPSVV
NHSKPNATQVHVDDTMSRQSEAMSRASPVIGGTANRQRDYNRGYSRGTSG
QSYTSGGNSFDAPSEADAYSETGSSAFYHQGHNQGSQSFVSVGSRDSFDH
YSQ*
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