mRNA_H-paniculata_contig4670.11638.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4670.11638.1
Unique NamemRNA_H-paniculata_contig4670.11638.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4670.11638.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4670contigH-paniculata_contig4670:6737..7659 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size378
Cds size378
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930392.2021809-CDS-H-paniculata_contig4670:6736..70231622930392.2021809-CDS-H-paniculata_contig4670:6736..7023Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4670 6737..7023 -
1691481270.866515-CDS-H-paniculata_contig4670:6736..70231691481270.866515-CDS-H-paniculata_contig4670:6736..7023Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4670 6737..7023 -
1622930392.2301083-CDS-H-paniculata_contig4670:7568..76591622930392.2301083-CDS-H-paniculata_contig4670:7568..7659Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4670 7569..7659 -
1691481270.8762562-CDS-H-paniculata_contig4670:7568..76591691481270.8762562-CDS-H-paniculata_contig4670:7568..7659Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4670 7569..7659 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4670.11638.1prot_H-paniculata_contig4670.11638.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4670 6737..7659 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4670.11638.1

>prot_H-paniculata_contig4670.11638.1 ID=prot_H-paniculata_contig4670.11638.1|Name=mRNA_H-paniculata_contig4670.11638.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
MFDTRASRHSRTRADDFVDEISTGDNSGTSDAQAHSAKPSSAASKTDENC
PSRSFASLNMRQEGSHARTKTSLPHAKTRGGSSHPWPFDGRGLRCKVKGC
RESPSYSFDGRRPAVRCGNHRETKMY
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mRNA from alignment at H-paniculata_contig4670:6737..7659-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4670.11638.1 ID=mRNA_H-paniculata_contig4670.11638.1|Name=mRNA_H-paniculata_contig4670.11638.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=923bp|location=Sequence derived from alignment at H-paniculata_contig4670:6737..7659- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCGACACGAGGGCTAGTCGGCATTCCCGCACAAGAGCCGACGATTT
TGTTGACGAAATTTCTACTGGCGACAATTCCGGTACTTCAGGTACGAACT
CTGACGGCCGGTCGATGTTGGTGTGTCAGGCGTAGGGATGACGTTCGCGT
ATTGACTTGGCGGTTATCATGGGTATAGTGAAGACGGTTCGTTTGCAGTA
TTTACGCTTGAGAAACGCCAGGTTGCGTGTGGTCCGTGACGGGCGGTCAA
TTCTATGGAATTTCTGTCATGAAGGCATATTGCTATTCACTGCTTTCTGC
GAGCCCTACCAGTTTCAGGATCCTAAAGTCGCCGTCGGTGCCTTTTGTTT
CTGTACACGACAAGATACTTCAACATATGCACCTGTCCCACCAGTTGGTA
GGTTCGCTGCACCCCCCACCCGCTCATCCCACCTTACCCTTGTTACTCAG
AGAGACAGCGCATGCCGTTTGAGCAGTGCAGCGTAGGCACCTCGTCGTTT
TAATCGTTCGATATGAAGCATTGAACGGCGTCTTTCTGCCTTAAGAACAC
ACAAACCTTTTTAGACTTCGCCTCCCCCCCTCTACCACCCCGTGCCACCC
CCCGCCGTAAAAACTTTACCTTTGATGTGCGCCCAGATGCCCAAGCGCAC
TCCGCGAAACCCTCGAGTGCTGCAAGTAAAACCGACGAAAACTGTCCCTC
CCGAAGCTTCGCTAGTCTAAATATGAGACAGGAGGGTTCACACGCTCGTA
CCAAAACGTCTTTGCCACACGCCAAGACGCGCGGCGGATCTTCACACCCA
TGGCCGTTCGACGGTCGGGGACTGCGTTGCAAGGTCAAGGGCTGCCGAGA
GTCCCCATCATACAGTTTCGATGGTAGAAGGCCAGCGGTGCGGTGCGGGA
ATCATCGAGAAACGAAGATGTAC
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Coding sequence (CDS) from alignment at H-paniculata_contig4670:6737..7659-

>mRNA_H-paniculata_contig4670.11638.1 ID=mRNA_H-paniculata_contig4670.11638.1|Name=mRNA_H-paniculata_contig4670.11638.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig4670:6737..7659- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCGACACGAGGGCTAGTCGGCATTCCCGCACAAGAGCCGACGATTT
TGTTGACGAAATTTCTACTGGCGACAATTCCGGTACTTCAGATGTTCGAC
ACGAGGGCTAGTCGGCATTCCCGCACAAGAGCCGACGATTTTGTTGACGA
AATTTCTACTGGCGACAATTCCGGTACTTCAGATGCCCAAGCGCACTCCG
CGAAACCCTCGAGTGCTGCAAGTAAAACCGACGAAAACTGTCCCTCCCGA
AGCTTCGCTAGTCTAAATATGAGACAGGAGGGTTCACACGCTCGTACCAA
AACGTCTTTGCCACACGCCAAGACGCGCGGCGGATCTTCACACCCATGGC
CGTTCGACGGTCGGGGACTGCGTTGCAAGGTCAAGGGCTGCCGAGAGTCC
CCATCATACAGTTTCGATGGTAGAAGGCCAGCGGTGCGGTGCGGGAATCA
TCGAGAAACGAAGATGTACATGCCCAAGCGCACTCCGCGAAACCCTCGAG
TGCTGCAAGTAAAACCGACGAAAACTGTCCCTCCCGAAGCTTCGCTAGTC
TAAATATGAGACAGGAGGGTTCACACGCTCGTACCAAAACGTCTTTGCCA
CACGCCAAGACGCGCGGCGGATCTTCACACCCATGGCCGTTCGACGGTCG
GGGACTGCGTTGCAAGGTCAAGGGCTGCCGAGAGTCCCCATCATACAGTT
TCGATGGTAGAAGGCCAGCGGTGCGGTGCGGGAATCATCGAGAAACGAAG
ATGTAC
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