mRNA_H-paniculata_contig467.11635.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig467.11635.1
Unique NamemRNA_H-paniculata_contig467.11635.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig467.11635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig467contigH-paniculata_contig467:5070..8737 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size703
Cds size699
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig467.11635.1prot_H-paniculata_contig467.11635.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig467 5070..8735 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930391.4889638-CDS-H-paniculata_contig467:5069..50911622930391.4889638-CDS-H-paniculata_contig467:5069..5091Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig467 5070..5091 +
1691481270.4823346-CDS-H-paniculata_contig467:5069..50911691481270.4823346-CDS-H-paniculata_contig467:5069..5091Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig467 5070..5091 +
1622930391.501595-CDS-H-paniculata_contig467:5485..56601622930391.501595-CDS-H-paniculata_contig467:5485..5660Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig467 5486..5660 +
1691481270.4930818-CDS-H-paniculata_contig467:5485..56601691481270.4930818-CDS-H-paniculata_contig467:5485..5660Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig467 5486..5660 +
1622930391.5190187-CDS-H-paniculata_contig467:6429..66061622930391.5190187-CDS-H-paniculata_contig467:6429..6606Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig467 6430..6606 +
1691481270.503384-CDS-H-paniculata_contig467:6429..66061691481270.503384-CDS-H-paniculata_contig467:6429..6606Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig467 6430..6606 +
1622930391.5355422-CDS-H-paniculata_contig467:7865..79801622930391.5355422-CDS-H-paniculata_contig467:7865..7980Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig467 7866..7980 +
1691481270.5150878-CDS-H-paniculata_contig467:7865..79801691481270.5150878-CDS-H-paniculata_contig467:7865..7980Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig467 7866..7980 +
1622930391.5519357-CDS-H-paniculata_contig467:8525..87351622930391.5519357-CDS-H-paniculata_contig467:8525..8735Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig467 8526..8735 +
1691481270.525283-CDS-H-paniculata_contig467:8525..87351691481270.525283-CDS-H-paniculata_contig467:8525..8735Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig467 8526..8735 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig467.11635.1

>prot_H-paniculata_contig467.11635.1 ID=prot_H-paniculata_contig467.11635.1|Name=mRNA_H-paniculata_contig467.11635.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=233bp
GKHPREGARGGAALTQAQRETVRCALLRGLSDPDDEGMTLDDQVQPTGDE
AGESVGGVIRRGIRRRLFDVFDVPPGAAGGSEGLNEAPGQRLLSLMRDMF
DRRTARTWLRFAPCLLLRPAEQAPGYHAKLFKKGLLDCQFVDMPIAAGAG
GLDARPMEPAFSFYSPPAAPNWYQNEAPVADGGYAGNYGTLTTDIAERKA
GMVRATQNYLWSQTQAPGGMGGGAGAGSSSGGS
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mRNA from alignment at H-paniculata_contig467:5070..8737+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig467.11635.1 ID=mRNA_H-paniculata_contig467.11635.1|Name=mRNA_H-paniculata_contig467.11635.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3668bp|location=Sequence derived from alignment at H-paniculata_contig467:5070..8737+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAAAGCATCCGAGGGAGGGAGGTGCGAGACAGTTCCAGTCTGACTAGGA
AATCGTTAATTTCGCTCTGAAATCAATATTGTGAGGCGCAGTTCGACGCC
GACTTGCACCTCACCGCATCCAAGGCATATCTCATGTTTCAGTTGTGGTA
CAACTTGTACTGGTAATAGTGCTCACATTTTTTCTTCATCTAAAAATGGT
TTTGTGCCCAGTCATGACAATACATGGAGGACAAGGCAGGGGAGCGTTGT
TGCGCAATTATCACAACCCTACGACGCACCGCGCTTGGATACCCAACACT
CAAAACGCCTCAAAAATACCCACGACCCTCCAATTCCCATCCTGTTCGAC
CAATAACCCCTGTGCTTGTTAACTCGGGTTTTATAACGCCGACGCCGAAT
GGTTAACCGCCATCAGCTCGAGGCGGCGCCGCACTAACGCAGGCCCAGAG
AGAAACGGTGCGATGCGCGCTTTTGAGAGGACTTTCTGACCCTGACGACG
AGGGAATGACCCTAGATGATCAAGTACAGCCGACAGGCGATGAAGCGGGG
GAATCCGTTGGGGGGGTCATCCGTCGCGGAATCCGAAGAAGGTGGGTGAA
AATCCACAATGTGGGATTAAACAACGGGCTCATACCTCGGTCTCTGATTC
GTTTCTATGACATACTCCAATATTAACCGTAGGACTGACTGGCCCCAAAA
AACATTGATTTCAATCAGAACGCCTGCTAGGCCGTCTGAGGTGACGACGC
GCCATACGGCTGCAACTGCAGTGCCTACGGCAGTGGAGATCTTCCCATGT
GGTACAGTAGCAAAGCACATGGTTAAGTATTACAGAGAGAAGGGTTAATG
GGATTCCCTCCCGCAGTTTAACTATTGGTCCATTTTTGTAAAATAGTTAT
CTGATTGATTCAAGAACCGTGGTTGTCAACTACCGATATCCAAGGTCAAG
ATGTCATCATCTGACCGGGGTGATTTCTGGCCGTGGCTGACAGCCTCATA
TCGATTGGCAAAGATTTCAAGACGGACAAATCTCCAGTCATCACTGGTTC
TATTTTACTCTCTTTAAAGTTCAGGAATCGATGTCCACGGCGACCGTTAG
AATCAGATCAGGTTGTCCACAAGAAAGCGCTAGCATGAGGCACTACTTTC
TGCCTGTGGTCATTTCTTGATTGTCGGTGAGGTTGGCGTAATCTACGAGA
CACTTTGTGACAAAATTACGTGGCACTTTTAATTTGTACATACGTGCGTG
GCACGCGTGGAAGAAAACATGGGTACTATCGTTTTTTTCTGGGGTTTCCC
ACGGTCAGGTAAGGAACTGACGATCACCGCCTCGGCCGCCACCGCTCCCA
CTGTACATAGGCTCTTCGACGTTTTCGATGTACCACCCGGTGCAGCAGGG
GGCAGTGAGGGGTTGAACGAAGCCCCTGGGCAACGACTGCTGTCTCTCAT
GAGGGACATGTTTGACAGAAGAACTGCCAGAACTTGGCTACGCTTCGCTC
CGTGTCTCTTGCTCAGACCAGCAGAACAGGCACCCGGGTAAGCGCTTTGA
ATCGATCCGCAATAGCGTCACCCAACAGACTTCTAAGTAATGACGGAAAT
CGTATACTGAGATGCGTTCGCCTCATCTTCCATAAGTCCAAATTCCGAGA
ATCATTATGGGGAAAAGCTGGACATAGTCGATGCCTACCGCGGCCGAGTT
GCACTTGATTTAGGTAACAAAATGAGCTCGAGCGGATCTGCGCACAGTGG
CCGTTCTGCGGACAGACGCTTGGCATCGATATGCGTGCATATATGATCTA
CACATCGTACTTTTTTTCTGAGTAGTAGTATGCCACGGCTATGCCACGGC
TATGCCATGGCTATGCCAGTGGCGTGCTTAACTTGAGACGCCTACGTGAT
CATCACGTTAGCGCGTTAACTCACAATAACACGTAGGTTTATCTTCCAAA
CTTATTAGGCAGAAAATCGTGTATTTCCATGCTGTTTTTGCACAGCGTTG
CGTGAGCTTTGGAAATTCTTCGATACCTTCACCGCTAGCATCTGACCATG
ACTTACTACTATGGAACATAGTTGGGAGACGCTCTTTATTGCCATATATG
CCGCTTTGGCACGTCCAAAAAAGGCCCAGTTTTGGGCCCAATTCATGTGG
TGTTTGGTTCATAATTTTCTACAGAAACGTTTGTTTGTGCAAAACCAGGT
ATCTCCTTAGAGCCTGAGAACTGATGCAGGTATTTTTTCTGTTCTGTTGC
GTGTGTTGTGTGACATTTTTACGAAAGTCAACAGGTTTACCCAAGCCGCC
CACATAATGCCCCCTTTGTTACTCTTGCGCCTTGCTGCACGAAGTTCGAA
AGACCCGTCGCACCTTCATCGTGGGCATCTATCTGACCATGACCTATATC
TCACAATGTTTCTGCGAGTTAGATCTGTGACGTCTCGTGTGTCATATCGG
AGATCTCGCGCTAAGAGTTGAAAAAATTCTAAATCGTGTTTATTTATTCA
CACCGTATTGCCACAGATTTTTCCACTGACCATTGCCGGGCTCTCCAGGT
GTTGTGAGAATTATGCAGCGCATTTGTTCTTCGCAACACGGTTGACCCAA
TATGTCGCTGAAGTCAGGTCGACTTTTTCTCCGACATAAACAAATACATC
GGACAAAACAAGTGGCGGGAACCTTCAGCTAGCTGGGCTATCAGCGGGGA
TGTGGAAGGTGTTGAAATTACCTAGTGTACTTTATAGTGACAAATACATA
CGATGTTCCTTCCGTTCCAAATGGCCTGCACCGGGCGGGCGATCAGGTAT
CACGCGAAACTGTTCAAGAAGGGCTTGCTGGACTGCCAATTCGTGGATAT
GCCGATTGCGGCTGGGGCTGGAGGGCTCGACGCCCGGCCTATGGAGCCAG
CATTTTCCTTTGTATCCCTCTCGTCTCAGGTACCCCCGCCTTCGCAAGTG
CTCATATTCGTTCTTTGAAGTTTTGGAGATAAGTTCGGTTGCATGGCTCA
CGCATCTGTGGGTTGCTTGTGGCGTTAAGGAGCAGGTATTTCCTCTAACC
TACGTTCTCTGCTCGTGTGTTACGACGACTTCGGGTGCATACGGTTGTAA
ACCGGTGTCCCATGCTATTGGTTTTGAGCTTCCACTCCCTGTCGCGAGTC
TCAGGTCAAGATTCCCTTAATTTGGCCGATGGACCCCTCTGCATGTTGTG
TCCACTGTAAACTGCGTTCACGGATACATTTGATATCACGATATCACTTA
CACAGCCTCCAAGCCATTCAACGCCAGGGTTTGATTGATATAATCGGCTT
CATTGGCGGATTGCAATCGCTGCAAACTTCGCCATAGCGAGACGTTGGTG
GACTCAGGGGGTGCATGCTACTGTGAGCACTCCGAATGGCGACAGGAAGG
TGCTCTCCTTGCCCTTCCTGCTCGCTCCTGCTATTGTACAAGTCACTTAT
TATCAGTACTCTCCCCCTGCCGCCCCCAACTGGTATCAGAATGAAGCCCC
CGTAGCGGATGGGGGTTACGCCGGGAACTACGGCACGCTAACAACCGATA
TTGCCGAGCGTAAAGCCGGAATGGTGAGGGCAACGCAAAACTATCTCTGG
TCTCAGACCCAAGCACCTGGCGGCATGGGGGGCGGCGCCGGTGCTGGGAG
CAGCTCGGGCGGGAGTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig467:5070..8737+

>mRNA_H-paniculata_contig467.11635.1 ID=mRNA_H-paniculata_contig467.11635.1|Name=mRNA_H-paniculata_contig467.11635.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1398bp|location=Sequence derived from alignment at H-paniculata_contig467:5070..8737+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAAAGCATCCGAGGGAGGGAGGGAAAGCATCCGAGGGAGGGAGCTCGAG
GCGGCGCCGCACTAACGCAGGCCCAGAGAGAAACGGTGCGATGCGCGCTT
TTGAGAGGACTTTCTGACCCTGACGACGAGGGAATGACCCTAGATGATCA
AGTACAGCCGACAGGCGATGAAGCGGGGGAATCCGTTGGGGGGGTCATCC
GTCGCGGAATCCGAAGAAGCTCGAGGCGGCGCCGCACTAACGCAGGCCCA
GAGAGAAACGGTGCGATGCGCGCTTTTGAGAGGACTTTCTGACCCTGACG
ACGAGGGAATGACCCTAGATGATCAAGTACAGCCGACAGGCGATGAAGCG
GGGGAATCCGTTGGGGGGGTCATCCGTCGCGGAATCCGAAGAAGGCTCTT
CGACGTTTTCGATGTACCACCCGGTGCAGCAGGGGGCAGTGAGGGGTTGA
ACGAAGCCCCTGGGCAACGACTGCTGTCTCTCATGAGGGACATGTTTGAC
AGAAGAACTGCCAGAACTTGGCTACGCTTCGCTCCGTGTCTCTTGCTCAG
ACCAGCAGAACAGGCACCCGGGCTCTTCGACGTTTTCGATGTACCACCCG
GTGCAGCAGGGGGCAGTGAGGGGTTGAACGAAGCCCCTGGGCAACGACTG
CTGTCTCTCATGAGGGACATGTTTGACAGAAGAACTGCCAGAACTTGGCT
ACGCTTCGCTCCGTGTCTCTTGCTCAGACCAGCAGAACAGGCACCCGGGT
ATCACGCGAAACTGTTCAAGAAGGGCTTGCTGGACTGCCAATTCGTGGAT
ATGCCGATTGCGGCTGGGGCTGGAGGGCTCGACGCCCGGCCTATGGAGCC
AGCATTTTCCTTTGTATCACGCGAAACTGTTCAAGAAGGGCTTGCTGGAC
TGCCAATTCGTGGATATGCCGATTGCGGCTGGGGCTGGAGGGCTCGACGC
CCGGCCTATGGAGCCAGCATTTTCCTTTTACTCTCCCCCTGCCGCCCCCA
ACTGGTATCAGAATGAAGCCCCCGTAGCGGATGGGGGTTACGCCGGGAAC
TACGGCACGCTAACAACCGATATTGCCGAGCGTAAAGCCGGAATGGTGAG
GGCAACGCAAAACTATCTCTGGTCTCAGACCCAAGCACCTGGCGGCATGG
GGGGCGGCGCCGGTGCTGGGAGCAGCTCGGGCGGGAGTTACTCTCCCCCT
GCCGCCCCCAACTGGTATCAGAATGAAGCCCCCGTAGCGGATGGGGGTTA
CGCCGGGAACTACGGCACGCTAACAACCGATATTGCCGAGCGTAAAGCCG
GAATGGTGAGGGCAACGCAAAACTATCTCTGGTCTCAGACCCAAGCACCT
GGCGGCATGGGGGGCGGCGCCGGTGCTGGGAGCAGCTCGGGCGGGAGT
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