mRNA_H-paniculata_contig4669.11631.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4669.11631.1
Unique NamemRNA_H-paniculata_contig4669.11631.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4669.11631.1 vs. uniprot
Match: A0A6H5L1Z3_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z3_9PHAE)

HSP 1 Score: 241 bits (616), Expect = 9.830e-71
Identity = 120/127 (94.49%), Postives = 122/127 (96.06%), Query Frame = 3 
Query:  309 MVRIMIKGGVWKNTEDEILKAAVMKYGKNQWARVASLLSRKSPKQCKARWYEWLDPSIKKTEWSREEEEKLLHMAKLMPNQWRTIAPIVGRTAAQCLQHYERLLDMAQESGGAGGDGEGAAAADDPR 689
            MVRIMIKGGVWKNTEDEILKAAVMKYGKNQWARVASLLSRKSPKQCKARWYEWLDPSIKKTEW+REEEEKLLHMAKLMPNQWRTIAPIVGRTAAQCLQHYERLLDMAQ+SGGA G   GAA ADDPR
Sbjct:    1 MVRIMIKGGVWKNTEDEILKAAVMKYGKNQWARVASLLSRKSPKQCKARWYEWLDPSIKKTEWNREEEEKLLHMAKLMPNQWRTIAPIVGRTAAQCLQHYERLLDMAQDSGGAAGGEGGAAMADDPR 127
[Close]
BLAST of mRNA_H-paniculata_contig4669.11631.1 vs. uniprot
Match: R1BP94_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BP94_EMIHU)

HSP 1 Score: 209 bits (533), Expect = 2.130e-65
Identity = 105/126 (83.33%), Postives = 115/126 (91.27%), Query Frame = 3 
Query:  312 VRIMIKGGVWKNTEDEILKAAVMKYGKNQWARVASLLSRKSPKQCKARWYEWLDPSIKKTEWSREEEEKLLHMAKLMPNQWRTIAPIVGRTAAQCLQHYERLLDMAQESGGAGGDGEGAAAADDPR 689
            +RI+IKGGVWKNTEDEILKAAVMKYGKNQW+R++SLL RKS KQCKARW+EWLDPSIKKTEWSREEEEKLLH+AKLMP QWRTIAPIVGRTAAQCL+HYERLLD A   G A  DG+ A+AADDPR
Sbjct:    1 MRILIKGGVWKNTEDEILKAAVMKYGKNQWSRISSLLVRKSAKQCKARWHEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIVGRTAAQCLEHYERLLDQAPRRG-ASADGD-ASAADDPR 124
[Close]
BLAST of mRNA_H-paniculata_contig4669.11631.1 vs. uniprot
Match: A0A7S3A5R9_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A5R9_9RHOD)

HSP 1 Score: 207 bits (526), Expect = 3.450e-65
Identity = 105/130 (80.77%), Postives = 114/130 (87.69%), Query Frame = 3 
Query:  312 VRIMIKGGVWKNTEDEILKAAVMKYGKNQWARVASLLSRKSPKQCKARWYEWLDPSIKKTEWSREEEEKLLHMAKLMPNQWRTIAPIVGRTAAQCLQHYERLLDMAQ--ESGGAGGDGEGA--AAADDPR 689
            +RIMIKGGVWKN+EDEILKAAVMKYGKNQWAR++SLL RKS KQCKARWYEWLDPSIKKTEW+REEEEKLLH+AK+MP QWRTIAPIVGRTAAQCL+HYE+LLD AQ  E  G G D   A  A ADDPR
Sbjct:    1 MRIMIKGGVWKNSEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEEEKLLHLAKIMPTQWRTIAPIVGRTAAQCLEHYEKLLDQAQKAEEDGPGEDTAAAELAGADDPR 130
[Close]
BLAST of mRNA_H-paniculata_contig4669.11631.1 vs. uniprot
Match: G8Z9G8_PLADU (CDC5-like protein (Fragment) n=1 Tax=Platynereis dumerilii TaxID=6359 RepID=G8Z9G8_PLADU)

HSP 1 Score: 208 bits (529), Expect = 2.700e-63
Identity = 104/127 (81.89%), Postives = 110/127 (86.61%), Query Frame = 3 
Query:  309 MVRIMIKGGVWKNTEDEILKAAVMKYGKNQWARVASLLSRKSPKQCKARWYEWLDPSIKKTEWSREEEEKLLHMAKLMPNQWRTIAPIVGRTAAQCLQHYERLLDMAQESGGAGGDGEGAAAADDPR 689
            M RIMIKGGVW+NTEDEILKAAVMKYGKNQWAR+ASLL RKS KQCKARW+EWLDPSIKKTEWSREEEEKLLH+AKLMP QWRTIAPIVGRTAAQCL+HYE LLD AQ+  G  GD       DDPR
Sbjct:    1 MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWARIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIVGRTAAQCLEHYEYLLDKAQQKEGDAGD-------DDPR 120
[Close]
BLAST of mRNA_H-paniculata_contig4669.11631.1 vs. uniprot
Match: R7TZJ0_CAPTE (Uncharacterized protein n=5 Tax=Bilateria TaxID=33213 RepID=R7TZJ0_CAPTE)

HSP 1 Score: 204 bits (520), Expect = 3.550e-63
Identity = 102/127 (80.31%), Postives = 110/127 (86.61%), Query Frame = 3 
Query:  309 MVRIMIKGGVWKNTEDEILKAAVMKYGKNQWARVASLLSRKSPKQCKARWYEWLDPSIKKTEWSREEEEKLLHMAKLMPNQWRTIAPIVGRTAAQCLQHYERLLDMAQESGGAGGDGEGAAAADDPR 689
            M RIMIKGGVW+NTEDEILKAAVMKYGKNQWAR+ASLL RKS KQCKARW+EWLDPSIKKTEWSREEEEKLLH+AKLMP QWRTIAPI+GRTAAQCL+HYE LLD AQ+    GG+       DDPR
Sbjct:    1 MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWARIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYELLLDKAQQKELDGGE-------DDPR 120
[Close]
BLAST of mRNA_H-paniculata_contig4669.11631.1 vs. uniprot
Match: UPI0005304D9B (cell division cycle 5-like protein n=2 Tax=Neognathae TaxID=8825 RepID=UPI0005304D9B)

HSP 1 Score: 201 bits (512), Expect = 1.270e-62
Identity = 102/127 (80.31%), Postives = 109/127 (85.83%), Query Frame = 3 
Query:  309 MVRIMIKGGVWKNTEDEILKAAVMKYGKNQWARVASLLSRKSPKQCKARWYEWLDPSIKKTEWSREEEEKLLHMAKLMPNQWRTIAPIVGRTAAQCLQHYERLLDMAQESGGAGGDGEGAAAADDPR 689
            M RIMIKGGVW+NTEDEILKAAVMKYGKNQW+R+ASLL RKS KQCKARWYEWLDPSIKKTEWSREEEEKLLH+AKLMP QWRTIAPI+GRTAAQCL+HYE LLD A +      D E    ADDPR
Sbjct:    1 MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDKAAQR-----DNE-EETADDPR 121
[Close]
BLAST of mRNA_H-paniculata_contig4669.11631.1 vs. uniprot
Match: A0A0S7LBX5_9TELE (CDC5L n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7LBX5_9TELE)

HSP 1 Score: 201 bits (511), Expect = 1.920e-62
Identity = 95/109 (87.16%), Postives = 102/109 (93.58%), Query Frame = 3 
Query:  309 MVRIMIKGGVWKNTEDEILKAAVMKYGKNQWARVASLLSRKSPKQCKARWYEWLDPSIKKTEWSREEEEKLLHMAKLMPNQWRTIAPIVGRTAAQCLQHYERLLDMAQE 635
            M RIMIKGGVW+NTEDEILKAAVMKYGKNQW+R+ASLL RKS KQCKARWYEWLDPSIKKTEWSREEEEKLLH+AKLMP QWRTIAPI+GRTAAQCL+HYE LLD A +
Sbjct:    1 MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEYLLDKAAQ 109
[Close]
BLAST of mRNA_H-paniculata_contig4669.11631.1 vs. uniprot
Match: J3RYR5_CROAD (Cell division cycle 5-like n=3 Tax=Euteleostomi TaxID=117571 RepID=J3RYR5_CROAD)

HSP 1 Score: 201 bits (512), Expect = 2.130e-62
Identity = 102/127 (80.31%), Postives = 109/127 (85.83%), Query Frame = 3 
Query:  309 MVRIMIKGGVWKNTEDEILKAAVMKYGKNQWARVASLLSRKSPKQCKARWYEWLDPSIKKTEWSREEEEKLLHMAKLMPNQWRTIAPIVGRTAAQCLQHYERLLDMAQESGGAGGDGEGAAAADDPR 689
            M RIMIKGGVW+NTEDEILKAAVMKYGKNQW+R+ASLL RKS KQCKARWYEWLDPSIKKTEWSREEEEKLLH+AKLMP QWRTIAPI+GRTAAQCL+HYE LLD A +      D E    ADDPR
Sbjct:    1 MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDKAAQR-----DNE-EETADDPR 121
[Close]
BLAST of mRNA_H-paniculata_contig4669.11631.1 vs. uniprot
Match: A0A7S0G5Y5_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G5Y5_9RHOD)

HSP 1 Score: 205 bits (521), Expect = 2.260e-62
Identity = 103/131 (78.63%), Postives = 115/131 (87.79%), Query Frame = 3 
Query:  312 VRIMIKGGVWKNTEDEILKAAVMKYGKNQWARVASLLSRKSPKQCKARWYEWLDPSIKKTEWSREEEEKLLHMAKLMPNQWRTIAPIVGRTAAQCLQHYERLLDMAQES-----GGAGGDGEGAAAADDPR 689
            +RIMIKGGVWKN+EDEILKAAVMKYGKNQW+R++SLL RKS KQCKARWYEWLDPSIKKTEW+REEEEKLLH+AK+MP QWRTIAPIVGRTAAQCL+HYE+LLD AQ++     GG    GE  A ADDPR
Sbjct:    1 MRIMIKGGVWKNSEDEILKAAVMKYGKNQWSRISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEEEKLLHLAKIMPTQWRTIAPIVGRTAAQCLEHYEKLLDQAQKAEEDVQGGDAAAGE-FAGADDPR 130
[Close]
BLAST of mRNA_H-paniculata_contig4669.11631.1 vs. uniprot
Match: R1EXI3_EMIHU (Uncharacterized protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EXI3_EMIHU)

HSP 1 Score: 209 bits (533), Expect = 2.620e-62
Identity = 105/126 (83.33%), Postives = 115/126 (91.27%), Query Frame = 3 
Query:  312 VRIMIKGGVWKNTEDEILKAAVMKYGKNQWARVASLLSRKSPKQCKARWYEWLDPSIKKTEWSREEEEKLLHMAKLMPNQWRTIAPIVGRTAAQCLQHYERLLDMAQESGGAGGDGEGAAAADDPR 689
            +RI+IKGGVWKNTEDEILKAAVMKYGKNQW+R++SLL RKS KQCKARW+EWLDPSIKKTEWSREEEEKLLH+AKLMP QWRTIAPIVGRTAAQCL+HYERLLD A   G A  DG+ A+AADDPR
Sbjct:    1 MRILIKGGVWKNTEDEILKAAVMKYGKNQWSRISSLLVRKSAKQCKARWHEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIVGRTAAQCLEHYERLLDQATRRG-ASADGD-ASAADDPR 124
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4669.11631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L1Z3_9PHAE9.830e-7194.49MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
R1BP94_EMIHU2.130e-6583.33Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A7S3A5R9_9RHOD3.450e-6580.77Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
G8Z9G8_PLADU2.700e-6381.89CDC5-like protein (Fragment) n=1 Tax=Platynereis d... [more]
R7TZJ0_CAPTE3.550e-6380.31Uncharacterized protein n=5 Tax=Bilateria TaxID=33... [more]
UPI0005304D9B1.270e-6280.31cell division cycle 5-like protein n=2 Tax=Neognat... [more]
A0A0S7LBX5_9TELE1.920e-6287.16CDC5L n=1 Tax=Poeciliopsis prolifica TaxID=188132 ... [more]
J3RYR5_CROAD2.130e-6280.31Cell division cycle 5-like n=3 Tax=Euteleostomi Ta... [more]
A0A7S0G5Y5_9RHOD2.260e-6278.63Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
R1EXI3_EMIHU2.620e-6283.33Uncharacterized protein (Fragment) n=1 Tax=Emilian... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4669contigH-paniculata_contig4669:1551..6753 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score214.9
Seed ortholog evalue2.2e-53
Seed eggNOG ortholog325452.fgenesh_scip_prom.46568.4683
Preferred nameCEF1
KEGG koko:K12860
KEGG Pathwayko03040,map03040
KEGG ModuleM00353,M00355
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000019,GO:0000228,GO:0000350,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0000723,GO:0000781,GO:0000782,GO:0000783,GO:0000784,GO:0000974,GO:0000981,GO:0000988,GO:0000989,GO:0001067,GO:0001076,GO:0001134,GO:0001135,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003691,GO:0003697,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006275,GO:0006282,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007568,GO:0007569,GO:0008022,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008380,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010639,GO:0010948,GO:0016043,GO:0016070,GO:0016071,GO:0016233,GO:0016604,GO:0019219,GO:0019222,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0030154,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031627,GO:0031848,GO:0031974,GO:0031981,GO:0032069,GO:0032074,GO:0032200,GO:0032204,GO:0032205,GO:0032207,GO:0032208,GO:0032210,GO:0032211,GO:0032213,GO:0032214,GO:0032502,GO:0032768,GO:0032770,GO:0032991,GO:0032993,GO:0033036,GO:0033043,GO:0033044,GO:0033262,GO:0033365,GO:0033554,GO:0034502,GO:0034613,GO:0034622,GO:0034641,GO:0042162,GO:0042592,GO:0042802,GO:0042803,GO:0043047,GO:0043085,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043247,GO:0043565,GO:0043933,GO:0044085,GO:0044087,GO:0044092,GO:0044093,GO:0044212,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044877,GO:0045292,GO:0045738,GO:0045786,GO:0045910,GO:0045934,GO:0045950,GO:0046483,GO:0046983,GO:0048239,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048869,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0050999,GO:0051000,GO:0051052,GO:0051053,GO:0051093,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051179,GO:0051252,GO:0051276,GO:0051336,GO:0051341,GO:0051346,GO:0051353,GO:0051641,GO:0051716,GO:0051726,GO:0060249,GO:0060255,GO:0061820,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070187,GO:0070198,GO:0070727,GO:0071006,GO:0071012,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0072695,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090329,GO:0090342,GO:0090344,GO:0090398,GO:0090657,GO:0097159,GO:0098505,GO:0098687,GO:0098847,GO:0140110,GO:1901360,GO:1901363,GO:1902494,GO:1902576,GO:1903506,GO:1903516,GO:1903517,GO:1903770,GO:1903824,GO:1904353,GO:1904354,GO:1904356,GO:1904357,GO:1904429,GO:1904430,GO:1904533,GO:1904534,GO:1905777,GO:1905778,GO:1905838,GO:1905839,GO:1990904,GO:2000104,GO:2000112,GO:2000113,GO:2000278,GO:2000279,GO:2000772,GO:2000773,GO:2001020,GO:2001021,GO:2001141,GO:2001251
EggNOG free text desc.pre-mRNA splicing factor component
EggNOG OGs3QC8Y@4776,COG5147@1,KOG0050@2759
COG Functional cat.K
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041,ko03400
Exons3
Model size692
Cds size384
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4669.11631.1prot_H-paniculata_contig4669.11631.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4669 1551..3015 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930391.1912968-CDS-H-paniculata_contig4669:1550..17851622930391.1912968-CDS-H-paniculata_contig4669:1550..1785Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4669 1551..1785 -
1691481270.3636062-CDS-H-paniculata_contig4669:1550..17851691481270.3636062-CDS-H-paniculata_contig4669:1550..1785Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4669 1551..1785 -
1622930391.2051582-CDS-H-paniculata_contig4669:2866..30151622930391.2051582-CDS-H-paniculata_contig4669:2866..3015Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4669 2867..3015 -
1691481270.3760858-CDS-H-paniculata_contig4669:2866..30151691481270.3760858-CDS-H-paniculata_contig4669:2866..3015Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4669 2867..3015 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930391.2247953-UTR-H-paniculata_contig4669:3015..30581622930391.2247953-UTR-H-paniculata_contig4669:3015..3058Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4669 3016..3058 -
1691481270.3880875-UTR-H-paniculata_contig4669:3015..30581691481270.3880875-UTR-H-paniculata_contig4669:3015..3058Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4669 3016..3058 -
1622930391.2396193-UTR-H-paniculata_contig4669:6488..67531622930391.2396193-UTR-H-paniculata_contig4669:6488..6753Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4669 6489..6753 -
1691481270.399492-UTR-H-paniculata_contig4669:6488..67531691481270.399492-UTR-H-paniculata_contig4669:6488..6753Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4669 6489..6753 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4669.11631.1

>prot_H-paniculata_contig4669.11631.1 ID=prot_H-paniculata_contig4669.11631.1|Name=mRNA_H-paniculata_contig4669.11631.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=128bp
MVRIMIKGGVWKNTEDEILKAAVMKYGKNQWARVASLLSRKSPKQCKARW
YEWLDPSIKKTEWSREEEEKLLHMAKLMPNQWRTIAPIVGRTAAQCLQHY
ERLLDMAQESGGAGGDGEGAAAADDPR*
back to top

mRNA from alignment at H-paniculata_contig4669:1551..6753-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4669.11631.1 ID=mRNA_H-paniculata_contig4669.11631.1|Name=mRNA_H-paniculata_contig4669.11631.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5203bp|location=Sequence derived from alignment at H-paniculata_contig4669:1551..6753- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGATATTTGACGTCTGTAGTCATGATCTAGGATGAGTTGTGTGAGACGA
TCCTGCAAGGTCTAAGGAGGGGACGGTCAGTCCATCAGGAGTCGCGGTCG
GAGAAGCCAATAAAGTCGGCGATTTGCGGGAATCAGGAAGGGCGTAACGC
TAGGATAAATTGAGGGTCTCCCCTGTCTACGTTTGATTTTCGCGCTCAAA
AAGACTGTGGGGTCCAAACAATTTCACTAAACCACGCACTTCGTGGAAGG
GGGACTGCAGACAGGGTGAGTTTTTACCGACTGCTAGGTGCATCCGCAAC
ACCAATTGGGGCTTGTATGAGCTATCGTTGATGTGCGTAGCGGAGGTATC
TTGCACATGCCATAACCGTGCCCGCTTTTCACGTTGTCCTTGGATAGTTA
GCTTGAGCACACCGCAAGACCAAGGTTATCATTAGCAGATAAACGGAAGA
ATACATTTGGAACAAAGTGGCCAAGCCTACCTTACCCGCAATGTCCGTTA
TCCAGTCGTAATGTCAGGCCTATCGAACTCTATACTGTACATGGTCGTGT
GTGTCATCACGTTGTCGTTGGTTTCCTTCACAGTACAGTCAGCAGTTTAC
AGTGATTACAACAGCACTGTACAATCTTTTGGAACACGCGAGGTTCAAAA
TATCTGTGTGTCGGGTATTCAAAACATCGCAACGATACATTTCCTATCTG
TCAGTCAAGCTTGATACATCGATGTATCGGTGCGACCGAGGCTAGACAGC
CGCGCGAAGCGCCAGGTGAATGCTCTTGAGCGAGCCAAAATGACTACCTC
CGCCTAGTGAGGAGGCTCTCGCTAGAGGCGTCCCCGGAGGTAGACACCAA
TCGTCCTTCTTGCCACAGTAGTTGTTGGATGATGATCACAACATGTGTAC
GTTCACTGGATAATCACTAATGCAGGCGGGGCGTACAACATTCCGAAAAA
TACTTGTGACAGCCCATCGACGTAATCTAAATCGTATCGCCCACACACGA
TATATCGCTCATGTATCGGCGCCAATACACAGTCTTAGTCGTAAATCTCA
GGCCGGTGTCGCAAAAGGAGAAGGATACATTGTGAGGAAGGTGTAGGGTT
AGATCAGAGCGAAACGTGTTTAAAGAAAAAGTACTGGAAAATGGCATTGG
CCAAAATGAACCCCATAAGTGAGAGGGGAAGTAGCCACTGTGAATACAAC
ATTTTGATATTACGGACATCCAAGGCTGGTTGCTGCCGCCGCAACGTGGT
ATGTTGTATGTTCTTTTGTGGAGTTGCATACTACAGGTGACAGACTGGGC
TACAGACGTTAATTCGATCGAGAGGTGGCAGCCAGCTGGACCCTGTAGGC
AATATGACACAGTGGAGTCGCGCATGGCAACAGAAGAAACAGATATTACG
TATACCGCAAGACCCCGAGGTATCGCACCAGTGTGCAAACGCTTTTCAAA
AGCGATCATCTCGAGAGTAACGACGGTACTGATATCAAATAGTATGCAAT
TAGGAAGGTCTTGCGGAGATGTGTCGATTGACGGGTTATTCGACTTCGTA
TTATCTCCGTTGTCAAGATGGTCACGTTTGAAGAACCGTTCTCATCCCAG
TGTAATACCTCCCGGTTTCATCTTAGTCGATCAACTGTTGCAGCATTTTG
TGTGTGCCATTGTACTGCGGGCATCATACGGCAACACATAGAAAAAGTTG
GGGGAATCGAAGCAGGCACGTTCGCAGGTATCAACATGAACCAAGAATTT
CAAAGCGGTGGCGGTATCACGTTATGCGTGATGTTACCCGTAGATACAGC
AGCAGACCACCTGACACTAATTTTTTGAGGCGTTATGCTTAAACTGTCAT
GACCCCATAATTTCTGTAAAATAATCCGGAGGTATCGCACGGGATCCAAA
CGCTCTTCAGACGCGATTACGGTAACACCCTTCGATGTCGCACCACCCTG
AGATTATACTTGAAAAACTCGTTTTTCTCGAGAAGAGAGAGCCTACTTCG
CGGAAAGAGCACATGTTTATCGAAAGATTTCACCGAGGTCTTCCCGTTGA
TGCCGATAAGTGTGTCATGAGCACCTTCGTCGTCAAACAAATCGAGTTGA
AAATGTTATAAGGGTATGTGGTATCAAGAGGGTCTTCAGTATCTTCACAA
AGTGCGGCGCAACCTTTAAAAGATCTAGCGGAGATCTGTCGACTGATGGG
TGATTTTCATCGCGCAAGGGTATTTCGCCGTTGCCCAGCCGTGGTTTACT
GTATTTTTTTTCTTGTGTGTGTTCGCCTTTTCTCGTTTTTTTCTCCCTTA
CTTTTTTGGTCTCTACTCGTTCTGTTGCTCATTTTGTTTTCGGTATAGTA
TTGCAATTTCACCAGGTCGCCATTTACCGAGTCTGAGGGATCGGGCTAAT
GTGTGAACAATAAGAATTATGATGCCTTCGTTCCCGCGATGGTCGTGTTT
GAAAAACGCTCCTTATATCCAATGACGAATCACCAGCCCCTAACCTTTAT
TGAAGAATGAGGTTCCGCGTCGCTTCAATCCCAGTTCTATTGCGACGCTT
TTAGACCATATGTATGCGTTGTGTCGTATTTTACAGTCGATCCTTTCTTC
AGCTTGACCTGTGTCGGGGGTGGAGATTTTAGAGTTAGGTGGTACCATGG
TGTAGTACGTCGTTTCAGACAACGTACTAGGTAGTCTTGAGATGTGTGAA
ACGTTCCCACCTCGTGGATGGTCCCCGTTTTCACGATTTTGTCTGTTTTG
TTAGCGGAAATTAACCGTTATCGCTCGGCATTTTTAATTGCTTGAGGGTA
CCTGTAGCTCCAGTTTTCATCAATGATTTGTTATGAGCGTGTTATTTTTT
TTTACCAGTGGATCGGGATACGTTGCGGACTGGGGGGAAGAGGGGAACGA
GCGTCTGCATATGAAGAGACGGTTTGTAATACTGCTGTAGAGTAGAGAGC
AAGTCAAAGGATAAGCTGGGGTGCACAGCGTACTGTCTGACCTGTCTGTA
GAAAACATGATCCAGACCTTGAGCCAAAACGGAGGTATGTTCAGTAGTGG
ATTTTTTTTTTCACGAAGTGAATAAACGTGTGGTGATTCACAAGCAAGTA
TTACTGTATCACTAGCCTGTGTATTGTACGTGAACATGAAAAGGTTTTGA
CACGAGCGAGTGACACCTATTGAATAATAATCCCCACCTTTCATCCAGCG
GGATATCTCATTTCAAGTCCATCAACTTGCCACGCTTCGTAGAGGTAAGC
TCTGACGCTTACATAACAGCAGCTCTATTGTACTACCATGTGAATGTTGT
GCTTCTGACCTCAAACTTGAGTTGTGTACACCTTGGAGCAAAATTAGATC
ATGATCAATAACAGGGTGGTTTCAGCCGGTTTGTTTCGAGTTTTGAGCGG
CTTTGCGGAGCCGTTAGGCGAATCTGTTTTCTCGCCCGTTGAACAGTACC
GCTATTTCGAATTGTGCCTTTTGCACCTTTGGCCGTCCGTGAGTGCATGC
CATTGAAAATGCTTTGACTTGAGTTTGTTTTTTGAGGCGCCTTGCGTACC
CCCCCCTGTTGAACTCTCCCCCCCCCCCCTCCCCCTTTACCGCATCCCTA
CTCCTGTAAGTATATCAACCCCTCCTCATTGATGAAGTTTTGCTGATAAA
TTCACCCCCACCCCCCTCCCCTGACTCACGTGTGCCGTCTTTCAGCAAAT
AGCGCAGTCGTGGACAACAACCCAGTACAAGCGCAACCATGGTGCGAATC
ATGATCAAGGGTGGGGTGTGGAAAAACACGGAGGATGAGATTCTCAAGGC
GGCCGTCATGAAGTACGGGAAGAACCAGTGGGCGCGAGTGGCCTCGCTGC
TCTCTAGGAAATCCCCAAAGCAGTGCAAGGCTCGCTGGTGAGTCGAGTTA
TGTTCCAGTGTATATTTGAAGGTGTTTGAAATCCCTTGTGACTTATTTTG
TAACGTTGTAAATAGTGGGCATTTTTGAATAGTAGAAATTATGTGTATGT
CAGTTATCACGGTCAGATAGAATCCTGGTGATTTATGCATCAGTGTGTCG
TTCAGAGTAATGAAAGACAGTGGTCGTTTGGAACCACGGTCACGCCCATG
GATCTTGTTTTTTTTTCACCAGATCCATGTATGAACATTGTACGAGGGCT
TATGAGGGTGACTGCTTGTGTGCTCTGTGTTGTGTGTTGCCGTTCTTGAT
ACTCACGTTTTATAATATGAGCTTTTCACCCCTCAGAGAAACACAAAGAC
CTGAAGAATTTGTGACAAACATTGAAAAGGTATACCTGCAAAGGGTCGGA
ATGTGCGGGTACATGGGAGTAGAATGTTGATCCCTGCGTATTTTGAGCTG
TCGTATTGGAGATGCTCCAGGGCATATGAGATTAACCTGCAGAGGCTGAA
TCTCAAGGTGAATAGTTGTGTGCTTTTCGTGGCGGATGCCCGAAGTATTT
TTATTCGTCCAGGGGGGGGAGGTATTAGGGGGGGGCATAGTCATGTATGT
TTTGCAGGCTATATTGACATGTTGGACCATTTTCCATTGGGTTGGCTCGT
GAATGCGGGTATCTGTCTGATTTCGTTGTTTTGATTCCTGTCAGACGTTC
ATGTGTAAGCCCCGTCATGTTTACGCATAGTATCCACAGGAGTGATGGAG
TAGGGTAATCCCTTGTGGAGGTCGTAGCCCGTATCGAGCCTGGTCGAAGA
GGTGCAGGAATTCGTGGTACTCCGTCATGGTGAAAGACCGACATATCTTA
TTGATTTATTTTTGTTGAGACGTGTTAAATAGCTGAAGATTTCAAGTCAG
CTGTATCTCCTCAACATGAGTACAATAGAGTCATTACTTGTGCGTTAGTG
CTAAAGTTCTTTTTTAATGTGATAAGTGGGTTGCGTTACGAAGGACAATC
CCGGCTGTGAAAGGGATGCCCCCCGTCTTCCTCCCTCCTCCCTCAATCGA
CTAATGCCGTGTCCACAGGTACGAATGGCTGGATCCATCCATCAAAAAGA
CGGAATGGAGCAGAGAGGAGGAGGAAAAGCTGCTGCACATGGCCAAACTC
ATGCCCAACCAGTGGCGAACGATCGCCCCCATCGTTGGTCGGACGGCAGC
GCAGTGCCTACAGCATTACGAACGCTTGCTAGACATGGCTCAAGAGAGCG
GAGGGGCTGGAGGTGATGGGGAGGGAGCGGCTGCTGCGGACGACCCAAGG
TAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4669:1551..6753-

>mRNA_H-paniculata_contig4669.11631.1 ID=mRNA_H-paniculata_contig4669.11631.1|Name=mRNA_H-paniculata_contig4669.11631.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at H-paniculata_contig4669:1551..6753- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGCGAATCATGATCAAGGGTGGGGTGTGGAAAAACACGGAGGATGA
GATTCTCAAGGCGGCCGTCATGAAGTACGGGAAGAACCAGTGGGCGCGAG
TGGCCTCGCTGCTCTCTAGGAAATCCCCAAAGCAGTGCAAGGCTCGCTGA
TGGTGCGAATCATGATCAAGGGTGGGGTGTGGAAAAACACGGAGGATGAG
ATTCTCAAGGCGGCCGTCATGAAGTACGGGAAGAACCAGTGGGCGCGAGT
GGCCTCGCTGCTCTCTAGGAAATCCCCAAAGCAGTGCAAGGCTCGCTGGT
ACGAATGGCTGGATCCATCCATCAAAAAGACGGAATGGAGCAGAGAGGAG
GAGGAAAAGCTGCTGCACATGGCCAAACTCATGCCCAACCAGTGGCGAAC
GATCGCCCCCATCGTTGGTCGGACGGCAGCGCAGTGCCTACAGCATTACG
AACGCTTGCTAGACATGGCTCAAGAGAGCGGAGGGGCTGGAGGTGATGGG
GAGGGAGCGGCTGCTGCGGACGACCCAAGGTAAGTACGAATGGCTGGATC
CATCCATCAAAAAGACGGAATGGAGCAGAGAGGAGGAGGAAAAGCTGCTG
CACATGGCCAAACTCATGCCCAACCAGTGGCGAACGATCGCCCCCATCGT
TGGTCGGACGGCAGCGCAGTGCCTACAGCATTACGAACGCTTGCTAGACA
TGGCTCAAGAGAGCGGAGGGGCTGGAGGTGATGGGGAGGGAGCGGCTGCT
GCGGACGACCCAAGGTAA
back to top