mRNA_H-paniculata_contig46615.11618.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig46615.11618.1
Unique NamemRNA_H-paniculata_contig46615.11618.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig46615.11618.1 vs. uniprot
Match: A0A6H5JCP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCP2_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.240e-15
Identity = 40/51 (78.43%), Postives = 42/51 (82.35%), Query Frame = 1
Query:    1 VSFITSGAAIDGMRGMNLLGVLFVGTLAATGGGTVRNLLLSQTPVFCLDEV 153
            VSF  SGAA  GMRGMNLLG +FVG LAATGGGTVR+LLL QTPVF L EV
Sbjct:  126 VSFAMSGAATAGMRGMNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVEV 176          
BLAST of mRNA_H-paniculata_contig46615.11618.1 vs. uniprot
Match: D8LLZ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLZ7_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 2.690e-14
Identity = 36/45 (80.00%), Postives = 38/45 (84.44%), Query Frame = 1
Query:   16 SGAAIDGMRGMNLLGVLFVGTLAATGGGTVRNLLLSQTPVFCLDE 150
            SGAA  GMRGMNLLG +FVG LAATGGGTVR+LLL QTPVF L E
Sbjct:    2 SGAATAGMRGMNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVE 46          
BLAST of mRNA_H-paniculata_contig46615.11618.1 vs. uniprot
Match: A0A835ZGC7_9STRA (UPF0126 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGC7_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.680e-9
Identity = 29/51 (56.86%), Postives = 35/51 (68.63%), Query Frame = 1
Query:    1 VSFITSGAAIDGMRGMNLLGVLFVGTLAATGGGTVRNLLLSQTPVFCLDEV 153
            V+F T GA   G  GM+LLG + +G + A GGGT R+LLL QTPVF L EV
Sbjct:   68 VAFATGGAICAGRAGMDLLGCIEIGVITAMGGGTTRDLLLGQTPVFWLQEV 118          
BLAST of mRNA_H-paniculata_contig46615.11618.1 vs. uniprot
Match: A0A6V8ME91_9DELT (Membrane protein n=2 Tax=Geomonas TaxID=2651583 RepID=A0A6V8ME91_9DELT)

HSP 1 Score: 58.2 bits (139), Expect = 6.960e-9
Identity = 28/50 (56.00%), Postives = 34/50 (68.00%), Query Frame = 1
Query:    1 VSFITSGAAIDGMRGMNLLGVLFVGTLAATGGGTVRNLLLSQTPVFCLDE 150
            V+F  SGA     RGM+LLGV+ +G + ATGGG VR+LLLS TP FC   
Sbjct:   17 VAFAASGALAGVRRGMDLLGVVVLGIVTATGGGVVRDLLLSDTPPFCFKN 66          
BLAST of mRNA_H-paniculata_contig46615.11618.1 vs. uniprot
Match: D8LE41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE41_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 1.940e-8
Identity = 27/48 (56.25%), Postives = 33/48 (68.75%), Query Frame = 1
Query:    7 FITSGAAIDGMRGMNLLGVLFVGTLAATGGGTVRNLLLSQTPVFCLDE 150
            F  SG    G  GM+LLG + VGT+ ATGGGTVR++LL  TPVF + E
Sbjct:   96 FAISGTVTAGQVGMDLLGCIIVGTITATGGGTVRDVLLGNTPVFWMHE 143          
BLAST of mRNA_H-paniculata_contig46615.11618.1 vs. uniprot
Match: A0A6H5JGY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGY7_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 2.880e-8
Identity = 27/48 (56.25%), Postives = 33/48 (68.75%), Query Frame = 1
Query:    7 FITSGAAIDGMRGMNLLGVLFVGTLAATGGGTVRNLLLSQTPVFCLDE 150
            F  SG    G  GM+LLG + VGT+ ATGGGTVR++LL  TPVF + E
Sbjct:  178 FAISGTVTAGHVGMDLLGCIIVGTITATGGGTVRDMLLGNTPVFWMHE 225          
BLAST of mRNA_H-paniculata_contig46615.11618.1 vs. uniprot
Match: A0A836CDZ5_9STRA (UPF0126 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDZ5_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.480e-8
Identity = 28/50 (56.00%), Postives = 32/50 (64.00%), Query Frame = 1
Query:    1 VSFITSGAAIDGMRGMNLLGVLFVGTLAATGGGTVRNLLLSQTPVFCLDE 150
            V F  SG    G  GM+LLG   VGT+ A GGGTVR+LLL  TPVF + E
Sbjct:   46 VVFAYSGCVTAGQAGMDLLGCTIVGTITAVGGGTVRDLLLGNTPVFWMTE 95          
BLAST of mRNA_H-paniculata_contig46615.11618.1 vs. uniprot
Match: A0A4V3NZG4_9DELT (Trimeric intracellular cation channel family protein n=3 Tax=Geomonas TaxID=2651583 RepID=A0A4V3NZG4_9DELT)

HSP 1 Score: 55.8 bits (133), Expect = 5.100e-8
Identity = 25/50 (50.00%), Postives = 34/50 (68.00%), Query Frame = 1
Query:    1 VSFITSGAAIDGMRGMNLLGVLFVGTLAATGGGTVRNLLLSQTPVFCLDE 150
            V+F  SGA     RGM+LLGV+ +G + ATGGG +R++LL+ TP FC   
Sbjct:   16 VAFAASGALAGVRRGMDLLGVIVLGIVTATGGGVIRDVLLNDTPPFCFKN 65          
BLAST of mRNA_H-paniculata_contig46615.11618.1 vs. uniprot
Match: A0A1Z5KKM8_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KKM8_FISSO)

HSP 1 Score: 56.2 bits (134), Expect = 6.600e-8
Identity = 27/48 (56.25%), Postives = 33/48 (68.75%), Query Frame = 1
Query:    7 FITSGAAIDGMRGMNLLGVLFVGTLAATGGGTVRNLLLSQTPVFCLDE 150
            F  SGA   G  GM+LLG++ V  L ATGGGTVR+LLL  TPVF + +
Sbjct:   86 FAFSGAVTAGKAGMDLLGMMIVSMLTATGGGTVRDLLLGATPVFWMQQ 133          
BLAST of mRNA_H-paniculata_contig46615.11618.1 vs. uniprot
Match: UPI0019CC9117 (Trimeric intracellular cation channel family protein n=1 Tax=Polaromonas sp. TaxID=1869339 RepID=UPI0019CC9117)

HSP 1 Score: 55.5 bits (132), Expect = 7.490e-8
Identity = 25/48 (52.08%), Postives = 35/48 (72.92%), Query Frame = 1
Query:    7 FITSGAAIDGMRGMNLLGVLFVGTLAATGGGTVRNLLLSQTPVFCLDE 150
            F  SGA   G RGM+L+GV+ +GT+ A GGGT+R+LLL + P+F L +
Sbjct:   14 FAISGAIAAGRRGMDLIGVIALGTVTAIGGGTIRDLLLDRHPIFWLAD 61          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46615.11618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCP2_9PHAE1.240e-1578.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLZ7_ECTSI2.690e-1480.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZGC7_9STRA1.680e-956.86UPF0126 domain-containing protein n=1 Tax=Tribonem... [more]
A0A6V8ME91_9DELT6.960e-956.00Membrane protein n=2 Tax=Geomonas TaxID=2651583 Re... [more]
D8LE41_ECTSI1.940e-856.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGY7_9PHAE2.880e-856.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CDZ5_9STRA3.480e-856.00UPF0126 domain-containing protein n=1 Tax=Tribonem... [more]
A0A4V3NZG4_9DELT5.100e-850.00Trimeric intracellular cation channel family prote... [more]
A0A1Z5KKM8_FISSO6.600e-856.25Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
UPI0019CC91177.490e-852.08Trimeric intracellular cation channel family prote... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46615contigH-paniculata_contig46615:1162..1317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionUncharacterised domain UPF0126
Ec32 orthologEc-14_002260.1
Exons1
Model size156
Cds size156
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930390.031631-CDS-H-paniculata_contig46615:1161..13171622930390.031631-CDS-H-paniculata_contig46615:1161..1317Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46615 1162..1317 -
1691481269.8917332-CDS-H-paniculata_contig46615:1161..13171691481269.8917332-CDS-H-paniculata_contig46615:1161..1317Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46615 1162..1317 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46615.11618.1prot_H-paniculata_contig46615.11618.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig46615 1162..1317 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig46615.11618.1

>prot_H-paniculata_contig46615.11618.1 ID=prot_H-paniculata_contig46615.11618.1|Name=mRNA_H-paniculata_contig46615.11618.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=52bp
VSFITSGAAIDGMRGMNLLGVLFVGTLAATGGGTVRNLLLSQTPVFCLDE
V*
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mRNA from alignment at H-paniculata_contig46615:1162..1317-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig46615.11618.1 ID=mRNA_H-paniculata_contig46615.11618.1|Name=mRNA_H-paniculata_contig46615.11618.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=156bp|location=Sequence derived from alignment at H-paniculata_contig46615:1162..1317- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTCATTTATCACGTCAGGAGCGGCTATCGATGGGATGCGAGGTATGAA CCTGCTCGGCGTTCTATTCGTGGGTACCTTAGCCGCGACCGGGGGAGGCA CCGTGCGAAATTTACTCCTGAGTCAAACCCCCGTATTCTGTCTAGACGAG GTATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig46615:1162..1317-

>mRNA_H-paniculata_contig46615.11618.1 ID=mRNA_H-paniculata_contig46615.11618.1|Name=mRNA_H-paniculata_contig46615.11618.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at H-paniculata_contig46615:1162..1317- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTCATTTATCACGTCAGGAGCGGCTATCGATGGGATGCGAGGTATGAA
CCTGCTCGGCGTTCTATTCGTGGGTACCTTAGCCGCGACCGGGGGAGGCA
CCGTGCGAAATTTACTCCTGAGTCAAACCCCCGTATTCTGTCTAGACGAG
GTATGAGTTTCATTTATCACGTCAGGAGCGGCTATCGATGGGATGCGAGG
TATGAACCTGCTCGGCGTTCTATTCGTGGGTACCTTAGCCGCGACCGGGG
GAGGCACCGTGCGAAATTTACTCCTGAGTCAAACCCCCGTATTCTGTCTA
GACGAGGTATGA
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