mRNA_H-paniculata_contig4652.11606.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4652.11606.1
Unique NamemRNA_H-paniculata_contig4652.11606.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4652.11606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4652contigH-paniculata_contig4652:622..3421 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1410
Cds size867
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4652.11606.1prot_H-paniculata_contig4652.11606.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4652 2555..3421 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930388.1423066-UTR-H-paniculata_contig4652:621..10361622930388.1423066-UTR-H-paniculata_contig4652:621..1036Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4652 622..1036 +
1691481268.96626-UTR-H-paniculata_contig4652:621..10361691481268.96626-UTR-H-paniculata_contig4652:621..1036Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4652 622..1036 +
1622930388.1571295-UTR-H-paniculata_contig4652:1548..16511622930388.1571295-UTR-H-paniculata_contig4652:1548..1651Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4652 1549..1651 +
1691481268.978047-UTR-H-paniculata_contig4652:1548..16511691481268.978047-UTR-H-paniculata_contig4652:1548..1651Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4652 1549..1651 +
1622930388.1762376-UTR-H-paniculata_contig4652:2531..25541622930388.1762376-UTR-H-paniculata_contig4652:2531..2554Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4652 2532..2554 +
1691481268.9975622-UTR-H-paniculata_contig4652:2531..25541691481268.9975622-UTR-H-paniculata_contig4652:2531..2554Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4652 2532..2554 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930388.1980267-CDS-H-paniculata_contig4652:2554..34211622930388.1980267-CDS-H-paniculata_contig4652:2554..3421Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4652 2555..3421 +
1691481269.00744-CDS-H-paniculata_contig4652:2554..34211691481269.00744-CDS-H-paniculata_contig4652:2554..3421Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4652 2555..3421 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4652.11606.1

>prot_H-paniculata_contig4652.11606.1 ID=prot_H-paniculata_contig4652.11606.1|Name=mRNA_H-paniculata_contig4652.11606.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=289bp
MLSGENHSDVLERFGADLWERMEIEKRATKGRKADAVLNEAVQAKAKARE
DSGGDEAGEGCPEKGAAATTDIPLMPRYWVPPHLLTFALWGPLADFQSND
ELCMKMSNGPSQKASPESIPESGGSSRGQSLDPLRDSDPMSMLSVHGEKF
SRGQVKKALVTRKKALAARKKAKVEEVRQSRHEEQSKEILTWMKTRVKRA
DEVAHSISTIARTAAVDQQIGSLLTQIGCAKDDGDKEKVAQLRAKYIALE
TSADLPPQTPTPPSPSVSQPPEGFSLEWESPRSMTNLPV
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mRNA from alignment at H-paniculata_contig4652:622..3421+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4652.11606.1 ID=mRNA_H-paniculata_contig4652.11606.1|Name=mRNA_H-paniculata_contig4652.11606.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2800bp|location=Sequence derived from alignment at H-paniculata_contig4652:622..3421+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTTTGAAAATTCAAACTACAAAGCGTGTTGTACGCACAACAGCACAAAC
TCGTCACGAGTTGCCAACAAGTCTCCAAGTGCCAACTCATCTCCATCGCA
GAATAATATTGCGACGTCATCGAGCAGCACGATCATGAGGGGCGCGGACC
TCGACATTCGCTGTAATGCAGACGTGTCCTGAGTGCTCGAGCGAGACAAA
AGGTACTGGGGAAGGCGTCTCATGTCCAAGAGCCTCAAATTCTACCAAAG
CCCGTGCCTATGGTGCGCCGGTCACATTTTCGTCTTGAATTCTGAAGGAT
TCAAGATACATGACAAGTACAAGCATGCCGCAAGTCTTACACCGAGGTTG
CAGTGCCGGCCATGCTACTCGCGATGGACTGTCTTGTCAGCCTATGGGCC
GGAAAGTGCTGGGAGGTGAGCGTTAGAACCTGAACACAATTTGGAAGAAT
TTGAGAGGACAATTCGTTACGCTGTGTAGTGCTGAGGAGACAACATGAAT
ATAGGCGACCTCGTGAGAAACCTTTCGTGTTGCCTAGTTCACTGTCGCTG
TCGTTTCTAAAGACTATATTCTCTTCGGTCTGTAGACTGCCGAAATATCG
AATAGTAGCCTTCATTTCGCAAGATCTTTTCTTTTCGAGGAAAGCAAAAC
AACAATCCGACAGGATCAACCTAACACATGATGTACGTTTAGCAATAGAA
GACGATGTGCTTTTGCAAAGTATTTTTTGTTGGCCTGTTTGCTGCTGCCT
TGAACTGCTATCGCTTCACAGAACAACTGGTTCGCTCCAACCCATAGGCT
CCGAAGCTACGGTGCAGTGTACAAACAGTATTATTGTGCTGATTCTTAAC
ATGTACCGTGCATAGCAGTAGCTTAGCAGTAACTTAACAGTCTTTGTGCT
TCGCGTCCACCCTGTGCGTGCAAGCAGGGAAGGCTTCCGACAAGTTCCTG
TCAAATCCCCGGTTAATATATCGAGGGTTCGAGGACGTGCAAAAGGAGAT
GAGAAGGGATTACATGACGACTTGCCGGAGGTGAGTGGATGGAATGAGTT
GTGGAATGCCATGGAAGATTTTTTGTCAGCGTAAAACGGAATGTGAATGA
TGCATTCGGAACAGGGATAAACGAAGAGTCAGGCAACTTCCTACGGCACC
ACTTGTGGTAAGAAGCGATGTTTGAAAATATAATCTAAACCCACCCGCCA
GCATACACCATGATTCATCCACTGTCACTGGGACAGTATGTCAACAACGA
CCAGGAAATTCGGTCTGTTCCTGTACTCCGGTACTGCTATGAGCGAGCAC
GCCGTGGGGCTATCTGTTGTGTGCGAAGGGGTTATCTGTACCACAAATGC
TAGTGCATCAGTCATGCTCCGTCACTCCAAAAATTCAAACCGTTCCAAAC
TGCGCGTTGAACTATTGGCAAAAATAGAAGGCCGCGGGGTTCGATTTTGG
GCTCGTACGATAAAAAAAAATCGAAGGCAAAACCTCCCACAAGAGGTGGT
TTCGAGTATTAGATAACTTTTTCTTGACGCGCAAAGTGCTTCAACGCGTG
CTGCGTCAGCAACAAGGCATGGTAGGGTAGCACAGTCAGATCAGACGCGG
TATTGGCCCCAAAGAAACGCACAGGGTAGGATCCGGTGCGATAGTACCGT
CCGCGAAAATATGTGGTAGCACGTACCGCCGGAAAACGTTCCATGGCCAA
TACCGATCTTGTTGCACAGTAGCTGCATACCACACGAAATTATGTCCCTT
GACCCCTTGATGGACGTCGGTGTGACTGCAGAGGATGGACTCGTCGCGAG
GTAGAAATCGCTACTCCACGGGAGAGATCGAGAGGGCAAGCGAGCAGCAC
GGAAATGATTATTTTCTTCCTCGCTCTTTTGCCGATACCCTGAACGTGTT
CGTCCCACAGGAAGACAAAACCCTAACGACAAGATGCTATCCGGGGAAAA
TCACAGCGATGTTCTTGAACGCTTCGGCGCAGACCTGTGGGAGCGAATGG
AGATCGAAAAGAGGGCTACCAAGGGGAGGAAGGCGGATGCCGTCTTGAAC
GAAGCCGTGCAGGCCAAAGCGAAGGCGAGAGAAGATAGCGGCGGTGACGA
GGCAGGAGAAGGATGTCCTGAAAAGGGAGCAGCTGCCACAACAGACATTC
CCCTCATGCCCCGGTACTGGGTTCCCCCCCATTTGCTGACGTTCGCCCTG
TGGGGCCCGCTAGCTGATTTCCAGAGCAACGACGAGTTGTGCATGAAGAT
GTCGAATGGTCCATCGCAGAAAGCCTCGCCCGAGTCCATACCTGAGTCAG
GCGGTTCATCACGTGGCCAGTCGTTGGACCCGCTGCGTGACTCCGACCCT
ATGTCAATGCTCTCAGTACACGGGGAGAAGTTTAGCCGGGGGCAAGTAAA
GAAGGCGCTCGTCACACGTAAGAAGGCGCTCGCCGCACGGAAGAAGGCGA
AGGTGGAGGAAGTCCGCCAATCCCGACATGAGGAGCAATCGAAGGAAATT
CTAACCTGGATGAAGACCAGAGTGAAGCGTGCCGACGAAGTGGCCCATAG
TATTAGCACGATAGCTCGGACGGCCGCAGTGGACCAACAGATAGGAAGTT
TGCTCACGCAGATAGGTTGTGCAAAGGATGACGGGGACAAAGAAAAAGTA
GCGCAACTTCGAGCAAAGTACATAGCGCTGGAAACCTCCGCAGATCTGCC
TCCGCAGACTCCGACGCCTCCTTCGCCTTCGGTTTCGCAACCGCCAGAGG
GTTTCTCTTTGGAATGGGAGTCCCCCCGTTCAATGACGAATCTCCCGGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig4652:622..3421+

>mRNA_H-paniculata_contig4652.11606.1 ID=mRNA_H-paniculata_contig4652.11606.1|Name=mRNA_H-paniculata_contig4652.11606.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1734bp|location=Sequence derived from alignment at H-paniculata_contig4652:622..3421+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTATCCGGGGAAAATCACAGCGATGTTCTTGAACGCTTCGGCGCAGA
CCTGTGGGAGCGAATGGAGATCGAAAAGAGGGCTACCAAGGGGAGGAAGG
CGGATGCCGTCTTGAACGAAGCCGTGCAGGCCAAAGCGAAGGCGAGAGAA
GATAGCGGCGGTGACGAGGCAGGAGAAGGATGTCCTGAAAAGGGAGCAGC
TGCCACAACAGACATTCCCCTCATGCCCCGGTACTGGGTTCCCCCCCATT
TGCTGACGTTCGCCCTGTGGGGCCCGCTAGCTGATTTCCAGAGCAACGAC
GAGTTGTGCATGAAGATGTCGAATGGTCCATCGCAGAAAGCCTCGCCCGA
GTCCATACCTGAGTCAGGCGGTTCATCACGTGGCCAGTCGTTGGACCCGC
TGCGTGACTCCGACCCTATGTCAATGCTCTCAGTACACGGGGAGAAGTTT
AGCCGGGGGCAAGTAAAGAAGGCGCTCGTCACACGTAAGAAGGCGCTCGC
CGCACGGAAGAAGGCGAAGGTGGAGGAAGTCCGCCAATCCCGACATGAGG
AGCAATCGAAGGAAATTCTAACCTGGATGAAGACCAGAGTGAAGCGTGCC
GACGAAGTGGCCCATAGTATTAGCACGATAGCTCGGACGGCCGCAGTGGA
CCAACAGATAGGAAGTTTGCTCACGCAGATAGGTTGTGCAAAGGATGACG
GGGACAAAGAAAAAGTAGCGCAACTTCGAGCAAAGTACATAGCGCTGGAA
ACCTCCGCAGATCTGCCTCCGCAGACTCCGACGCCTCCTTCGCCTTCGGT
TTCGCAACCGCCAGAGGGTTTCTCTTTGGAATGGGAGTCCCCCCGTTCAA
TGACGAATCTCCCGGTCATGCTATCCGGGGAAAATCACAGCGATGTTCTT
GAACGCTTCGGCGCAGACCTGTGGGAGCGAATGGAGATCGAAAAGAGGGC
TACCAAGGGGAGGAAGGCGGATGCCGTCTTGAACGAAGCCGTGCAGGCCA
AAGCGAAGGCGAGAGAAGATAGCGGCGGTGACGAGGCAGGAGAAGGATGT
CCTGAAAAGGGAGCAGCTGCCACAACAGACATTCCCCTCATGCCCCGGTA
CTGGGTTCCCCCCCATTTGCTGACGTTCGCCCTGTGGGGCCCGCTAGCTG
ATTTCCAGAGCAACGACGAGTTGTGCATGAAGATGTCGAATGGTCCATCG
CAGAAAGCCTCGCCCGAGTCCATACCTGAGTCAGGCGGTTCATCACGTGG
CCAGTCGTTGGACCCGCTGCGTGACTCCGACCCTATGTCAATGCTCTCAG
TACACGGGGAGAAGTTTAGCCGGGGGCAAGTAAAGAAGGCGCTCGTCACA
CGTAAGAAGGCGCTCGCCGCACGGAAGAAGGCGAAGGTGGAGGAAGTCCG
CCAATCCCGACATGAGGAGCAATCGAAGGAAATTCTAACCTGGATGAAGA
CCAGAGTGAAGCGTGCCGACGAAGTGGCCCATAGTATTAGCACGATAGCT
CGGACGGCCGCAGTGGACCAACAGATAGGAAGTTTGCTCACGCAGATAGG
TTGTGCAAAGGATGACGGGGACAAAGAAAAAGTAGCGCAACTTCGAGCAA
AGTACATAGCGCTGGAAACCTCCGCAGATCTGCCTCCGCAGACTCCGACG
CCTCCTTCGCCTTCGGTTTCGCAACCGCCAGAGGGTTTCTCTTTGGAATG
GGAGTCCCCCCGTTCAATGACGAATCTCCCGGTC
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