prot_H-paniculata_contig46488.11598.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig46488.11598.1
Unique Nameprot_H-paniculata_contig46488.11598.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length264
Homology
BLAST of mRNA_H-paniculata_contig46488.11598.1 vs. uniprot
Match: UPI00109F3D5B (uncharacterized protein LOC110093484 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=UPI00109F3D5B)

HSP 1 Score: 62.0 bits (149), Expect = 3.300e-7
Identity = 58/270 (21.48%), Postives = 112/270 (41.48%), Query Frame = 0
Query:    3 LKIVHSTEAPSEAWRKITKHYRASGFKERSRLLREFNSLRMEPGEESAKFLLRVDQVANDLERLGRTVDEHDRNLAIVNGLSPEYDIERIMIESSDDTPNRARIELIIANQYNRLQQQ--KGETGAKALTITMKGTAETCQLCHKLGHTA------PQCKGGRRASSNIKKRFDGVCWVCGSSEHIAR----RCPKRHHDTNEGAVALLATIRGPKAMTAERWNSDTGATDHMTSDETAFEDYTPALPGTMCEIANGTFVPVEGCGRLVL 260
            L  V +  +  EAW  + +  + S      +L  E ++++M+      ++L ++  + +++   G  VD  D  L I+NGL   Y+  +  I +S    +   +  ++ N+   L Q+  K +T +              +   +   T       PQ      +S NI+     +C +CG   H+A     RC  ++  T+      + T   P +   + W  DTGA+ H+T D +  +  +         +ANG+ VP++  G  +L
Sbjct:  108 LPYVITATSAYEAWTTLERRLQPSSRSRVMQLKNELHNIQMK-NLTMQQYLSQIKNIVDNIAASGSKVDPEDIILHILNGLPATYNSFKTSIRTSPVPSDLDNLYALLCNEEIHLNQEIAKEQTTSSPALYAAPNNPPRNRNSKRFIKTKSNSSSIPQTTSNTSSSGNIRP----ICQICGKIGHVALNCWYRCDLKYAPTSVSNPRAMLTT--PTSYPTQDWILDTGASSHLTPDNSNLQTSSAYHGQDSISVANGSSVPIQHSGHGLL 370          
BLAST of mRNA_H-paniculata_contig46488.11598.1 vs. uniprot
Match: A0A2I0WJQ1_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WJQ1_9ASPA)

HSP 1 Score: 60.5 bits (145), Expect = 1.060e-6
Identity = 62/270 (22.96%), Postives = 106/270 (39.26%), Query Frame = 0
Query:    3 LKIVHSTEAPSEAWRKITKHYRASGFKERSRLLREFNSLRMEPGEESAKFLLRVDQVANDLERLGRTVDEHDRNLAIVNGLSPEYDIERIMIESS------DDTPNRARIELI-IANQYNR---LQQQKGETGAKALTITMKGTAETCQLCH-KLGHTAPQCKGGRRASSNIKKRFDGV-CWVCGSSEHIARRCPKRHHDTNEGAVALLATIRGPKAMTAERWNSDTGATDHMTSDETAFEDYTPALPGTMCEIANGTFVPVEGCGRLVL 260
            L  V S    +E W  + +  ++S      +L  EF+ L M+  +   ++LL V    + L   G  +   D     ++GL P Y   +  I ++      DD       E I +A++  R     Q  G + A + T             H +  ++ P       ++  +      + C +CG   H A +C  RH D         A    P   T+  W  D+GA+ H+TSD+T F+   P    +   + NG  +P+   G+ +L
Sbjct:  118 LPYVLSVATCTEIWTVLDRRLQSSTRSRIIQLKHEFHYLSMKD-KSMTQYLLEVKNKVDSLAAAGAPLAVEDVIHYTLDGLPPAYQAFKTSIRTNLQPLSLDDLYTLLCSEEINLAHETTRELHSLQISGNSAAFSATRGXXXXXXXXXXXHGRNSYSNPSQPNKSTSNRGVNTSKPPINCQICGKYGHSAIKCWHRHDDQYNADPPNTAFFSSPSPHTSSEWYLDSGASTHLTSDQTQFQSSQPYTGSSQVILGNGNQLPIHNTGKGIL 386          
BLAST of mRNA_H-paniculata_contig46488.11598.1 vs. uniprot
Match: UPI000DC692B6 (uncharacterized protein LOC105247889 n=1 Tax=Camponotus floridanus TaxID=104421 RepID=UPI000DC692B6)

HSP 1 Score: 57.4 bits (137), Expect = 2.410e-6
Identity = 27/57 (47.37%), Postives = 34/57 (59.65%), Query Frame = 0
Query:  133 MKGTAETCQLCHKLGHTAPQCKGGRRASSNIKKRFDGVCWVCGSSEHIARRCPKRHH 189
            +KG    C  C K+GH APQCK        +KK     C++CGS+EH+AR CPKR H
Sbjct:  154 IKGKPTKCYKCLKIGHIAPQCK-----RVPMKK----TCYMCGSTEHLARECPKRGH 201          
BLAST of mRNA_H-paniculata_contig46488.11598.1 vs. uniprot
Match: UPI002010774D (uncharacterized protein LOC125228091 n=2 Tax=Leguminivora glycinivorella TaxID=1035111 RepID=UPI002010774D)

HSP 1 Score: 58.5 bits (140), Expect = 3.030e-6
Identity = 57/258 (22.09%), Postives = 104/258 (40.31%), Query Frame = 0
Query:    6 VHSTEAPSEAWRKITKHYRASGFKERSRLLREFNSLRMEPGEESAKFLLRVDQVANDLERLGRTVDEHDRNLAIVNGLSPEYD--IERIMIESSDDTPNRARIELIIANQYNRLQQQKGETGAKALTITMKGTAETCQLCHKLGHTAPQC---KGGRRASSNIKKRFDGVCWVCGSSEHIARRCPKRHHDTNEGAVALLATIRGPKAMTAERWNSDTGATDHMTSDETAFEDYTPALPGTMCEIANGTFVPVEGCGRL 258
            V +   P++AW K+   +   G   R  LLR+ + ++       A ++  +  +   LE +GRT+++ +    +++GL  EYD  +  +   +   T     I+  +  +++R    K    + A  +T K    TC  C + GHT  +C   K  +R SSN                           D      A +A  R P+    E +  D+GAT+ M +++    D  P     +  +A+   +  E  G+L
Sbjct:   77 VRNCTTPADAWSKLKDAFEDKGLYRRVLLLRKLHRIQFSEHSSMASYIDSIITIVQQLEDIGRTIEDAEVAEILLSGLPAEYDTVVSSLSTAAVGQTVKSEVIKSRLLQEFSR----KSSIESTAAFVTKKQV--TCDFCKRQGHTKARCFKLKSKKRKSSNPNM------------------------DRTNMVAAFMA--RTPQ----ENFYLDSGATNSMVNNKNLLSDTLPCQSNVI--VADNNKISCEAIGKL 296          
BLAST of mRNA_H-paniculata_contig46488.11598.1 vs. uniprot
Match: A0A2N9FT70_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FT70_FAGSY)

HSP 1 Score: 57.8 bits (138), Expect = 8.000e-6
Identity = 40/125 (32.00%), Postives = 47/125 (37.60%), Query Frame = 0
Query:  139 TCQLCHKLGHTAPQCKGGRRASSNIKKRFDGVCWVCGSSEHIARRCPKRHHDTNEGAVALLATIRGPKAMTAERWNSDTGATDHMTSDETAFEDYTPALPGTMCEIANGTFVPVEGCGRLVLRVS 263
            TCQ+CHKLGHTA  C         +   F G                 RH      A+A  A    P   T   W SDTGATDH T D     D        +  + NG  +P+   G   LR S
Sbjct:  261 TCQICHKLGHTAIDCY------QRMNYAFQG-----------------RHPPAKLAAMATAA----PPDSTPTTWISDTGATDHFTPDLHNIPDNHAYTDSQLVSVGNGNQLPISHIGNSQLRTS 358          
BLAST of mRNA_H-paniculata_contig46488.11598.1 vs. uniprot
Match: A0A2N9J0P4_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9J0P4_FAGSY)

HSP 1 Score: 55.1 bits (131), Expect = 6.510e-5
Identity = 40/132 (30.30%), Postives = 50/132 (37.88%), Query Frame = 0
Query:  132 TMKGTAETCQLCHKLGHTAPQCKGGRRASSNIKKRFDGVCWVCGSSEHIARRCPKRHHDTNEGAVALLATIRGPKAMTAERWNSDTGATDHMTSDETAFEDYTPALPGTMCEIANGTFVPVEGCGRLVLRVS 263
            T +G+  TCQ+CHKLGHTA  C         +   F G                   H   + A    AT   P+      W SDTGATDH T D     D        +  + NG  +P+   G   LR S
Sbjct:  469 TNQGSRPTCQICHKLGHTAIDCY------QRMNYAFQG------------------RHPLAKLAAMATATPTPPEPHQTT-WISDTGATDHFTPDIHNLPDNQAYTDPQLVSVGNGHQLPITHIGNSQLRTS 575          
BLAST of mRNA_H-paniculata_contig46488.11598.1 vs. uniprot
Match: A0A284S1T9_ARMOS (Integrase catalytic domain-containing protein n=1 Tax=Armillaria ostoyae TaxID=47428 RepID=A0A284S1T9_ARMOS)

HSP 1 Score: 54.7 bits (130), Expect = 7.080e-5
Identity = 39/150 (26.00%), Postives = 65/150 (43.33%), Query Frame = 0
Query:  121 KGETGAKALTITMKGTAETCQLCHKLGHTAPQCKGGRRASSNIKKRFDGVCWVCGSSEHIARRCPKRHHDTNEGAVALLATIR---------GPKAMTAERWNSDTGATDHMTSDETAFEDYTPALPGTMCEIANGTFVPVEGCGRLVLR 261
            K  T   +  +T  GT  TC  C + GH+  +C+  + +    ++R         ++E +A +  +R   T +   A  A I+          P +     WN+DTGA+ HMT     F  Y+P +      +A+ T +  EG G +VL 
Sbjct:  221 KATTSPSSANLTSAGTKSTCGWCLREGHSEDECETKKFSLKRDQER---------AAERMASK--RRQKGTGKREAANSADIKEETASQASTDPSSPAMSHWNTDTGASRHMTPHRHWFNVYSPHI--VPIRLADNTVIYSEGIGTVVLE 357          
BLAST of mRNA_H-paniculata_contig46488.11598.1 vs. uniprot
Match: A0A2I0W497_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0W497_9ASPA)

HSP 1 Score: 54.7 bits (130), Expect = 7.910e-5
Identity = 49/238 (20.59%), Postives = 100/238 (42.02%), Query Frame = 0
Query:   31 RSRLLREFNSLR-MEPGEES-AKFLLRVDQVANDLERLGRTVDEHDRNLAIVNGLSPEYDIERIMIESSDDTPNRARIELIIANQYNRLQQQKGETGAKALTITMKGTAETCQLCHKLG-HTAPQCKGGRRASSNIKK-----RFDGVCWVCGSSEHIARRCPKRHHDTNEGAVALLATIRGPKAMTAERWNSDTGATDHMTSDETAFEDYTPALPGTMCEIANGTFVPVEGCGRLVL 260
            RSR+++  N L  +  G++S  ++LL +    + ++ +G T+D  D  L  +NGL   Y   +  I ++    +   +  ++ ++  +L  Q+     + + IT    A        +G +   +   GRR S+   +       +  C +C  + H A  C   +           A    P    +  W  D+GA+ H+T+D++      P    +   + NG  +P++  G+ +L
Sbjct:  139 RSRIIQLKNDLHHLSKGDKSMTQYLLEIKSKVDAIQEMGHTIDPEDVILYTLNGLPSSYQSFKTAIRTNLQPLSLDDLYSLLCSE-EQLLLQEATKDLQTMQITDNSVAFAASRGRAIGRNNTYRGNRGRRQSTPTGRGDKNPHINTTCQICSKTGHSAICCWYHNDPAYSDNSNTSALFSAPDNNRSTDWFLDSGASSHLTTDQSQLSVTEPYYGNSQVILGNGQSLPIQNTGKGLL 375          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46488.11598.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
UPI00109F3D5B3.300e-721.48uncharacterized protein LOC110093484 n=1 Tax=Dendr... [more]
A0A2I0WJQ1_9ASPA1.060e-622.96Retrovirus-related Pol polyprotein from transposon... [more]
UPI000DC692B62.410e-647.37uncharacterized protein LOC105247889 n=1 Tax=Campo... [more]
UPI002010774D3.030e-622.09uncharacterized protein LOC125228091 n=2 Tax=Legum... [more]
A0A2N9FT70_FAGSY8.000e-632.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9J0P4_FAGSY6.510e-530.30Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A284S1T9_ARMOS7.080e-526.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A2I0W497_9ASPA7.910e-520.59Retrovirus-related Pol polyprotein from transposon... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 56..76
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 3..115
e-value: 1.3E-16
score: 60.5
NoneNo IPR availableGENE3D4.10.60.10coord: 116..194
e-value: 1.4E-9
score: 39.5
NoneNo IPR availablePANTHERPTHR34222FAMILY NOT NAMEDcoord: 4..226
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 139..155
e-value: 0.28
score: 14.6
coord: 170..186
e-value: 0.0037
score: 26.2
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 170..186
e-value: 3.6E-4
score: 20.5
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 171..186
score: 8.944
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 136..188

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46488contigH-paniculata_contig46488:33..968 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46488.11598.1mRNA_H-paniculata_contig46488.11598.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig46488 33..968 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig46488.11598.1 ID=prot_H-paniculata_contig46488.11598.1|Name=mRNA_H-paniculata_contig46488.11598.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=264bp
MALKIVHSTEAPSEAWRKITKHYRASGFKERSRLLREFNSLRMEPGEESA
KFLLRVDQVANDLERLGRTVDEHDRNLAIVNGLSPEYDIERIMIESSDDT
PNRARIELIIANQYNRLQQQKGETGAKALTITMKGTAETCQLCHKLGHTA
PQCKGGRRASSNIKKRFDGVCWVCGSSEHIARRCPKRHHDTNEGAVALLA
TIRGPKAMTAERWNSDTGATDHMTSDETAFEDYTPALPGTMCEIANGTFV
PVEGCGRLVLRVS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf