mRNA_H-paniculata_contig4646.11592.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig4646.11592.1
Unique Name	mRNA_H-paniculata_contig4646.11592.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig4646.11592.1 vs. uniprot
Match: A0A5D2RII0_GOSTO (Histone H4 n=1 Tax=Gossypium tomentosum TaxID=34277 RepID=A0A5D2RII0_GOSTO)

HSP 1 Score: 202 bits (513), Expect = 3.710e-65
Identity = 103/111 (92.79%), Postives = 107/111 (96.40%), Query Frame = 2

Query:   20 QHIRNLENMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 352
            QH+ +   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   14 QHLFDSSKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 124

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BLAST of mRNA_H-paniculata_contig4646.11592.1 vs. uniprot
Match: A0A3L6V663_9STRA (Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID=A0A3L6V663_9STRA)

HSP 1 Score: 201 bits (511), Expect = 7.740e-65
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 2

Query:   41 NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 352
            NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 125

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BLAST of mRNA_H-paniculata_contig4646.11592.1 vs. uniprot
Match: A0A453MYW1_AEGTS (Histone H4 n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453MYW1_AEGTS)

HSP 1 Score: 200 bits (509), Expect = 9.330e-65
Identity = 103/108 (95.37%), Postives = 105/108 (97.22%), Query Frame = 2

Query:   29 RNLENMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 352
            R  E MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    2 RRRERMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 109

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BLAST of mRNA_H-paniculata_contig4646.11592.1 vs. uniprot
Match: W5QFN7_SHEEP (Histone H4 n=3 Tax=Bilateria TaxID=33213 RepID=W5QFN7_SHEEP)

HSP 1 Score: 200 bits (509), Expect = 9.630e-65
Identity = 103/108 (95.37%), Postives = 107/108 (99.07%), Query Frame = 2

Query:   29 RNLENMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 352
            ++L NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    3 QHLGNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 110

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BLAST of mRNA_H-paniculata_contig4646.11592.1 vs. uniprot
Match: A0A4D9CLB0_9STRA (Histone H4 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CLB0_9STRA)

HSP 1 Score: 200 bits (509), Expect = 1.290e-64
Identity = 104/107 (97.20%), Postives = 105/107 (98.13%), Query Frame = 2

Query:   32 NLENMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 352
            NL  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTA+DVVYALKRQGRTLYGFGG
Sbjct:   13 NLTAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYGFGG 119

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BLAST of mRNA_H-paniculata_contig4646.11592.1 vs. uniprot
Match: V7AI73_PHAVU (Histone H4 n=1 Tax=Phaseolus vulgaris TaxID=3885 RepID=V7AI73_PHAVU)

HSP 1 Score: 200 bits (509), Expect = 1.610e-64
Identity = 102/108 (94.44%), Postives = 106/108 (98.15%), Query Frame = 2

Query:   29 RNLENMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 352
            + +E MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   19 KGVEKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 126

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BLAST of mRNA_H-paniculata_contig4646.11592.1 vs. uniprot
Match: A0A6G1SJU5_9ACAR (Histone H4 (Fragment) n=1 Tax=Aceria tosichella TaxID=561515 RepID=A0A6G1SJU5_9ACAR)

HSP 1 Score: 201 bits (510), Expect = 1.680e-64
Identity = 103/109 (94.50%), Postives = 107/109 (98.17%), Query Frame = 2

Query:   26 IRNLENMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 352
            ++N  NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   30 LQNKFNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 138

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BLAST of mRNA_H-paniculata_contig4646.11592.1 vs. uniprot
Match: A0A024G0M5_9STRA (Histone H4 n=40 Tax=Stramenopiles TaxID=33634 RepID=A0A024G0M5_9STRA)

HSP 1 Score: 199 bits (506), Expect = 2.210e-64
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 2

Query:   44 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 352
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of mRNA_H-paniculata_contig4646.11592.1 vs. uniprot
Match: A0A452XX37_AEGTS (Histone H4 n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452XX37_AEGTS)

HSP 1 Score: 200 bits (509), Expect = 2.550e-64
Identity = 103/108 (95.37%), Postives = 106/108 (98.15%), Query Frame = 2

Query:   29 RNLENMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 352
            R+L  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   33 RDLSAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 140

[Close]

BLAST of mRNA_H-paniculata_contig4646.11592.1 vs. uniprot
Match: A0A1J3ENA7_NOCCA (Histone H4 (Fragment) n=2 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3ENA7_NOCCA)

HSP 1 Score: 200 bits (508), Expect = 2.610e-64
Identity = 103/113 (91.15%), Postives = 107/113 (94.69%), Query Frame = 2

Query:   14 LSQHIRNLENMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 352
             S+  +  E MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   18 FSRKFKFPEKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 130

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig4646.11592.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig4646.11592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A5D2RII0_GOSTO	3.710e-65	92.79	Histone H4 n=1 Tax=Gossypium tomentosum TaxID=3427...	[more]
A0A3L6V663_9STRA	7.740e-65	100.00	Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID...	[more]
A0A453MYW1_AEGTS	9.330e-65	95.37	Histone H4 n=1 Tax=Aegilops tauschii subsp. strang...	[more]
W5QFN7_SHEEP	9.630e-65	95.37	Histone H4 n=3 Tax=Bilateria TaxID=33213 RepID=W5Q...	[more]
A0A4D9CLB0_9STRA	1.290e-64	97.20	Histone H4 n=1 Tax=Nannochloropsis salina CCMP1776...	[more]
V7AI73_PHAVU	1.610e-64	94.44	Histone H4 n=1 Tax=Phaseolus vulgaris TaxID=3885 R...	[more]
A0A6G1SJU5_9ACAR	1.680e-64	94.50	Histone H4 (Fragment) n=1 Tax=Aceria tosichella Ta...	[more]
A0A024G0M5_9STRA	2.210e-64	100.00	Histone H4 n=40 Tax=Stramenopiles TaxID=33634 RepI...	[more]
A0A452XX37_AEGTS	2.550e-64	95.37	Histone H4 n=2 Tax=Aegilops tauschii subsp. strang...	[more]
A0A1J3ENA7_NOCCA	2.610e-64	91.15	Histone H4 (Fragment) n=2 Tax=Noccaea caerulescens...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig4646	contig	H-paniculata_contig4646:3164..3518 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	198.7
Seed ortholog evalue	1.3e-48
Seed eggNOG ortholog	157072.XP_008863623.1
KEGG ko	ko:K11254
KEGG Pathway	ko05034,ko05203,ko05322,map05034,map05203,map05322
Hectar predicted targeting category	other localisation
GOs	GO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031497,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0042393,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0065003,GO:0065004,GO:0070013,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.	protein heterodimerization activity
EggNOG OGs	COG2036@1,KOG3467@2759
COG Functional cat.	B
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko03036
Exons	1
Model size	355
Cds size	312
Stop	1
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930386.5977798-UTR-H-paniculata_contig4646:3163..3206	1622930386.5977798-UTR-H-paniculata_contig4646:3163..3206	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig4646 3164..3206 +
1691481268.2276762-UTR-H-paniculata_contig4646:3163..3206	1691481268.2276762-UTR-H-paniculata_contig4646:3163..3206	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig4646 3164..3206 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930386.6135738-CDS-H-paniculata_contig4646:3206..3518	1622930386.6135738-CDS-H-paniculata_contig4646:3206..3518	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig4646 3207..3518 +
1691481268.2400324-CDS-H-paniculata_contig4646:3206..3518	1691481268.2400324-CDS-H-paniculata_contig4646:3206..3518	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig4646 3207..3518 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig4646.11592.1	prot_H-paniculata_contig4646.11592.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig4646 3207..3518 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig4646:3164..3518+
coding sequence from alignment at H-paniculata_contig4646:3164..3518+

protein sequence of mRNA_H-paniculata_contig4646.11592.1

>prot_H-paniculata_contig4646.11592.1 ID=prot_H-paniculata_contig4646.11592.1|Name=mRNA_H-paniculata_contig4646.11592.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGL
IYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYG
FGG*

mRNA from alignment at H-paniculata_contig4646:3164..3518+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig4646.11592.1 ID=mRNA_H-paniculata_contig4646.11592.1|Name=mRNA_H-paniculata_contig4646.11592.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=355bp|location=Sequence derived from alignment at H-paniculata_contig4646:3164..3518+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAACACCTCTTAACTTTCTCAACACATCCGTAACCTAGAGAATATGTCAG
GGCGCGGAAAGGGCGGTAAGGGGCTGGGTAAGGGTGGTGCCAAGCGCCAC
CGCAAGGTACTTCGCGACAATATCCAGGGTATTACCAAGCCCGCCATCCG
TCGTCTGGCTCGCCGTGGTGGTGTGAAGCGTATTTCTGGTCTGATCTACG
AGGAGACTCGTGGTGTACTCAAGGTATTCCTAGAGAACGTCATCCGTGAC
TCGGTCACGTACACTGAGCACGCCCGCCGTAAGACTGTGACTGCCATGGA
CGTGGTCTACGCCCTCAAGCGTCAAGGCCGCACCCTGTACGGCTTTGGCG
GCTAA

Coding sequence (CDS) from alignment at H-paniculata_contig4646:3164..3518+

>mRNA_H-paniculata_contig4646.11592.1 ID=mRNA_H-paniculata_contig4646.11592.1|Name=mRNA_H-paniculata_contig4646.11592.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig4646:3164..3518+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAGGGCGCGGAAAGGGCGGTAAGGGGCTGGGTAAGGGTGGTGCCAA
GCGCCACCGCAAGGTACTTCGCGACAATATCCAGGGTATTACCAAGCCCG
CCATCCGTCGTCTGGCTCGCCGTGGTGGTGTGAAGCGTATTTCTGGTCTG
ATCTACGAGGAGACTCGTGGTGTACTCAAGGTATTCCTAGAGAACGTCAT
CCGTGACTCGGTCACGTACACTGAGCACGCCCGCCGTAAGACTGTGACTG
CCATGGACGTGGTCTACGCCCTCAAGCGTCAAGGCCGCACCCTGTACGGC
TTTGGCGGCTAAATGTCAGGGCGCGGAAAGGGCGGTAAGGGGCTGGGTAA
GGGTGGTGCCAAGCGCCACCGCAAGGTACTTCGCGACAATATCCAGGGTA
TTACCAAGCCCGCCATCCGTCGTCTGGCTCGCCGTGGTGGTGTGAAGCGT
ATTTCTGGTCTGATCTACGAGGAGACTCGTGGTGTACTCAAGGTATTCCT
AGAGAACGTCATCCGTGACTCGGTCACGTACACTGAGCACGCCCGCCGTA
AGACTGTGACTGCCATGGACGTGGTCTACGCCCTCAAGCGTCAAGGCCGC
ACCCTGTACGGCTTTGGCGGCTAA