mRNA_H-paniculata_contig4641.11587.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4641.11587.1 vs. uniprot
Match: A0A6H5KJX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJX9_9PHAE) HSP 1 Score: 591 bits (1523), Expect = 1.110e-186 Identity = 482/1050 (45.90%), Postives = 567/1050 (54.00%), Query Frame = 1
Query: 1 GDKRSFSMMNICANRLAGETRKGWAVANVVAEMCEALVSMLHHQLHEVLMKALDPRRSIVRRRDPSLGSLSSGRRGQMGPVKCDETLRLIAPALETLFDVAPLSRVLDVDEGSAAAAVEANAISRATTISLCLRVRLRLLTAGLVLLRAAGETAEGAAATQAAAKEGRTGTMGTGDLSTSLSISNTTNGGGKRRFSRNHRNPHSSSTNTNSSRSSENSRAQFEQHVKMSIRARLKLLRAACGTLQELDALEAALRNNHKNSDTHNQRNPPRGGLGDGRSGHDPHGSSXXXXXXTAPANSTHHDIRGVPGLATGAGGAKSKRRLGGISMHDGVVEAEGDRTLRANLAGVCVAIMEEMTLPRGWAM-GGVGDGXXXXXXXXXRGKPCGVDVMAMEVDRIVREEKVIPRLLNRAARASRLACASFAALHSTPMPAADAAAAARDRRFGGGDSFAMDVEDGEGGVGXXXXXXXXXXXXXXGEVESAEGVELLQLIYSFFASAAARGISLGLMLDTGVLTAMANDPLLALVRQKSADKQASIPRGYTNLSECSAHWRCYLLALRTASDLARRIR-------PLPQG--------GRVASSKNV------------EEIGLRQVFHFVEAFSGTMTEGLCSFSSSAVAMATSSDASGGXXXXXXGPGLITLCLLQERLDVVAVVAALGPWMARWRAQQPKASTIILEAVRQSTRTAAVLLVPAAGP---GATKSTVAGGRGGQTPTPNGGGWSSPATAPPVTGGGG--DFTPMHQATPTPRPMGGLTPSRLGGGAAAXXXXXXXXX---------------GIGGAVVHPFELIEACAVAITDEEKLIESTFMNFAFDAPGGGXXXXXXXXXXXXXGPCAMTMATPTPVRGGGYTPVRGGGGGAGTATPRDGXXXXXXXXXXXXVAGNGLWVRVEDGLTAFLVLALGILRLVSPQPKDMFVGVDSSDKTRIEAPNGAWIEWRLAGPRQATTGRAADERAAGNDHSDARATQKGMVVRRDPRGKGYIARYEAASSDGGG--GVREEVVPWSSVVAIR 3000
GDKRSFSM+ I A+RLAGE RKGWAV NVVAEMCEALVSMLHHQLHEV+ KAL+PRRS+VRRRDP LG LS G RGQM CD+TLR +APALE+LFDVAPLSRVLDVDE +EAN ISRATTISLCLRVRLRLLTAGL+L G G GD S ++ GG+ +R R S +T ++ + S E+ ++S +AR+KLLR ACGTL+ELD LE L+ RGG G RG PG A S+ G +EAEGDRTLRA++ CV+IMEEMT+PR + M GG +G VMA EV+RIVREEKVIPRLL RAARASRLAC +F LHS P P XXXXXXX +AEGVELLQLIYS FASAA+RG+ M+++GV++AMANDP+L LVRQ SADKQ S+PRGYT+ SE S HW+CYLLALRT SDL R I PL G V+SS + E GL QVF FV+ F TM EGL ++ S+ +GG G +TL ++QE +DV VVAALGPW+ RWRAQ P ST +LEAVRQ+TRTAAVLLVPA GP PV +FTPM QATPTP +GGGAA XXXXXXXXX G G A P EL+EACA+A+T EEK + GGG PCAMTMATPTPV G A A PR G XXXXXX G G + RVEDG+TAFLVLAL +LR VSPQPKDM + V D+ IEAP GAWIE + PR+A+ G A + + + G V+ RD R +GY+AR+EA GGG GV EE++PW VVAI+
Sbjct: 325 GDKRSFSMVKIAAHRLAGEKRKGWAVVNVVAEMCEALVSMLHHQLHEVVQKALEPRRSVVRRRDPGLGRLSRGVRGQMSSDACDQTLRTLAPALESLFDVAPLSRVLDVDE-RVGGVLEANVISRATTISLCLRVRLRLLTAGLLLXXXXXXXXXXXXXXXXXXXXGGAGASVIGDGS----VTGGAGAGGRSYGTRERR---SLATGGGTATGEDFS----EEASRLSRQARIKLLRRACGTLKELDVLEEDLK-------------ARRGGGGK----------------------------RG-PGAAA--------------SLPGGALEAEGDRTLRAHIVETCVSIMEEMTIPRAYMMAGGHEEGEEWKRERETA-------VMAAEVERIVREEKVIPRLLERAARASRLACNTFGPLHSPPPPNTXXXXXXXXXXXXXXXXXXXXXXX---XXXXXXXXXXKAARGPDAGAATAEGVELLQLIYSVFASAASRGLLTRTMVESGVVSAMANDPMLTLVRQASADKQCSVPRGYTHQSELSPHWQCYLLALRTTSDLTRTIHASKALSSPLASNAVAARWTAGIVSSSSSAGGVSRERIGPREAEAGLSQVFRFVDTFRETMVEGL--------SLVVSAPPTGG--------GRLTLAVVQESVDVAGVVAALGPWVERWRAQHPGTSTQLLEAVRQATRTAAVLLVPATGPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVARRRSLEEFTPMQQATPTP------ARGAVGGGAAIXXXXXXXXXXXXXXXXXXXXXXXAGGGIADSRPLELVEACALAVTAEEKAALDNGGYGVSSSDGGGQY------------PCAMTMATPTPVYRGXXXXXXXX---AVFAPPRAGVGXXXXXX-----GGLGFFGRVEDGITAFLVLALSVLRRVSPQPKDMKIEVRPEDRGSIEAPVGAWIECKCRVPRRASNGDAQNASHGVGRGKGSTLLRSGKVIGRDMRRQGYLARFEATPGGGGGVGGVSEELIPWEDVVAIK 1254
BLAST of mRNA_H-paniculata_contig4641.11587.1 vs. uniprot
Match: D7FGV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV3_ECTSI) HSP 1 Score: 416 bits (1070), Expect = 9.640e-125 Identity = 398/988 (40.28%), Postives = 474/988 (47.98%), Query Frame = 1
Query: 253 ETLRLIAPALETLFDVAPLSRVLDVDEGSAAAAVEANAISRATTISLCLRVRLRLLTAGLVLLRAAGETAEGAAATQAAAKEGRTGTMGTGDLSTSLSISNTTNGGGKRRFSRNHRNPHSSSTNTNSSRSSENSRAQF-EQHVKMSIRARLKLLRAACGTLQELDALEAALRNNHKNSDTHNQRNPPRGGLGDGRSGHDPHGSSXXXXXXTAPANSTHHDIRGVPGLATGAGGAKSKRRLGGISMHDGVVEAEGDRTLRANLAGVCVAIMEEMTLPRGWAM-GGVGDGXXXXXXXXXRGKPCGVDVMAMEVDRIVREEKVIPRLLNRAARASRLACASFAALHSTPMPAADAAAAARDRRFGGGDSFAMDVEDGEGGVGXXXXXXXXXXXXXXGEVESAEGVELLQLIYSFFASAAARGISLGLMLDTGVLTAMANDPLLALVRQKSADKQASIPRGYTNLSECSAHWRCYLLALRTASDLARRIR-------PLPQ--------------------------GG--RVASSKNVEEIGLRQVFHFVEAFSGTMTEGLCSFSSSAVAMATSSDASGGXXXXXXGPGLITLCLLQERLDVVAVVAALGPWMARWRAQQPKASTIILEAVRQSTRTAAVLLVPAAGPGATKSTVAGGRGGQTPTPNGGGWSSPATAP-----PVTGGGG--DFTPMHQATPTPRPMGGLTPSRLGGGAAAXXXXXXXXXGIGG----------------AVVHPFELIEACAVAITDEEKLIESTFMNFAFDAPGGGXXXXXXXXXXXXXGPCAMTMATPTPVRGG----------GYTPVRGGGGGAGTATPRDGXXXXXXXXXXXXVAGNGLWVRVEDGLTAFLVLALGILRLVSPQPKDMFVGVDSSDKTRIEAPNGAWIEWRLAG-PRQATTGRAADERAAGNDHSDARATQKGMVVRRDPRGKGYIARYEAASSDGGGG-VREEVVPWSSVVAIR 3000
+TLR +APALE+LFDVAPLSRVLD+D G +EAN ISRATTISLCLRVRLRLLTAGL+ + ++ GGG ++ F E+ ++S +AR+KLLR ACGTL+ELD LE L+ RGG G RG PG A S+ G +EAEGDRTLRA++ CV+IM+EMT+PR + M GG +G VM EV+RIVREEKVIPRLL RAARASRLA A+ XXXXXXXXX +AEGVELLQLIYS FASAA+RG+ ML++GV++AM+NDP+LALVRQ SADKQ S+PRGYTN SE S HW+CYLLALRT SDL R IR PL GG R E GL QVF FV+AF TM GL ++ S+ +GG G +TL ++QE +DV VVAALGPWM+RWRAQ P ST +LEAVRQ+TRTAAVLLVPA GP A PV +FTPM QATPTP +GGGAA XXXXXXXXX A P EL++ACA+A+T EEK G PCAMTMATPTPV G + P+R G XXXXXX G G + RVEDG+TAFLVLAL +LR VSPQPKDM + V D+ IEAP GAWIE + G PR+A +G A + + GMV+ RD RG+GY+AR+EAA V EE+VPW VVAI+
Sbjct: 23 QTLRTLAPALESLFDVAPLSRVLDMD-GGVGGVLEANVISRATTISLCLRVRLRLLTAGLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYGTRERRSSATGGGT------------------------SAGEDFPEEASRLSRQARIKLLRRACGTLKELDVLEEDLK-------------ARRGGGGK----------------------------RG-PGAAA--------------SLPGGALEAEGDRTLRAHIVETCVSIMDEMTIPRAYMMAGGHEEGEEWKRERETA-------VMVAEVERIVREEKVIPRLLERAARASRLASATXXXXXXXXXX----------------------XXXXXXXXXXXXXXXXXXARGPDAGAATAEGVELLQLIYSVFASAASRGLLTRTMLESGVVSAMSNDPMLALVRQASADKQCSVPRGYTNQSELSPHWQCYLLALRTTSDLTRTIRASKALSSPLASNAIAARWTAVVSXXXXXXXXXXXXXXGGVSRERMGPREAEAGLSQVFRFVDAFRETMVVGL--------SLVVSAPPTGG--------GRLTLAVVQESMDVAGVVAALGPWMSRWRAQHPGTSTQLLEAVRQATRTAAVLLVPATGPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVARRRSLEEFTPMQQATPTP------ARGAVGGGAAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXMADSRPLELVKACALAVTAEEKAARDKGXXXXXXXXXXGQY------------PCAMTMATPTPVHRGXXXXXXXXXXAFAPLRAG-----------------VXXXXXXXXGLGFFGRVEDGITAFLVLALSVLRRVSPQPKDMKIEVRPEDRGSIEAPVGAWIECKCRGVPRRAGSGDAQGAXXXXXXXKGSTLLRSGMVIGRDMRGQGYLARFEAAPGXXXXXXVSEELVPWEDVVAIK 849
BLAST of mRNA_H-paniculata_contig4641.11587.1 vs. uniprot
Match: D7FGV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV4_ECTSI) HSP 1 Score: 134 bits (336), Expect = 2.680e-28 Identity = 66/84 (78.57%), Postives = 71/84 (84.52%), Query Frame = 1
Query: 1 GDKRSFSMMNICANRLAGETRKGWAVANVVAEMCEALVSMLHHQLHEVLMKALDPRRSIVRRRDPSLGSLSSGRRGQMGPVKCD 252
GDKRSFSM+ I A+RLAGE RKGWAV NVVAEMCEALVSMLHHQLHEV+ KAL+PRRS+VRRRDP LG LS G RGQM CD
Sbjct: 731 GDKRSFSMVKIAAHRLAGEKRKGWAVVNVVAEMCEALVSMLHHQLHEVVQKALEPRRSVVRRRDPGLGRLSRGVRGQMSSDACD 814 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4641.11587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4641.11587.1 >prot_H-paniculata_contig4641.11587.1 ID=prot_H-paniculata_contig4641.11587.1|Name=mRNA_H-paniculata_contig4641.11587.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=994bp MMNICANRLAGETRKGWAVANVVAEMCEALVSMLHHQLHEVLMKALDPRRback to top mRNA from alignment at H-paniculata_contig4641:1025..14314- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4641.11587.1 ID=mRNA_H-paniculata_contig4641.11587.1|Name=mRNA_H-paniculata_contig4641.11587.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=13290bp|location=Sequence derived from alignment at H-paniculata_contig4641:1025..14314- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4641:1025..14314- >mRNA_H-paniculata_contig4641.11587.1 ID=mRNA_H-paniculata_contig4641.11587.1|Name=mRNA_H-paniculata_contig4641.11587.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5964bp|location=Sequence derived from alignment at H-paniculata_contig4641:1025..14314- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |