mRNA_H-paniculata_contig46270.11560.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig46270.11560.1
Unique NamemRNA_H-paniculata_contig46270.11560.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig46270.11560.1 vs. uniprot
Match: A0A6H5JSK5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSK5_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 1.970e-9
Identity = 35/88 (39.77%), Postives = 50/88 (56.82%), Query Frame = 1 
Query:    1 ELTPPGTPQYNSVAQRRLGLLREKTIAL-MQDQM---EGDS-KKVWAEAMNYACNITNMSCTSSIEGNVTPYEKWYGTTAPLEHLQPF 249
            E TP  +P+YN VA+R LGL+++  +A  +Q  +   E  S   +WAEA  +ACN  N + T+S     +PYE W+G   P E   PF
Sbjct:   28 EFTPAYSPEYNGVAERALGLIKDAALAARIQAPILYPEAPSYPSLWAEATAWACNALNCTSTTSNPDKKSPYEMWHGHPPPPEATYPF 115
[Close]
BLAST of mRNA_H-paniculata_contig46270.11560.1 vs. uniprot
Match: A0A6H5K1N9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N9_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 6.920e-9
Identity = 31/88 (35.23%), Postives = 47/88 (53.41%), Query Frame = 1 
Query:    1 ELTPPGTPQYNSVAQRRLGLLREKTIALMQDQME-----GDSKKVWAEAMNYACNITNMSCTSSIEGNVTPYEKWYGTTAPLEHLQPF 249
            E TP  +P+YN VA+R LGL+++  IA             + + +WAEA+ ++CN  N + T+S     +PYE W+G   P     PF
Sbjct:  458 EFTPAHSPEYNGVAERALGLIKDAAIAARIQAPTLYPGAPNYRSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF 545
[Close]
BLAST of mRNA_H-paniculata_contig46270.11560.1 vs. uniprot
Match: A0A6H5JLP8_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLP8_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 2.360e-8
Identity = 30/91 (32.97%), Postives = 50/91 (54.95%), Query Frame = 1 
Query:    1 ELTPPGTPQYNSVAQRRLGLLREKTIALMQDQMEGDSK--------KVWAEAMNYACNITNMSCTSSIEGNVTPYEKWYGTTAPLEHLQPF 249
            E TP  +P+YN VA+R LGL+++  +A    +++  ++         +WAEA+ ++CN  N + T+S     +PYE W+G   P     PF
Sbjct:   28 EFTPAHSPEYNGVAERALGLIKDAALAA---RIQAPTRYPGAPNYPSLWAEAIVWSCNALNCTSTTSNPEKKSPYEMWHGHPPPRGATYPF 115
[Close]
BLAST of mRNA_H-paniculata_contig46270.11560.1 vs. uniprot
Match: A0A6H5JXF7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF7_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 2.420e-8
Identity = 31/88 (35.23%), Postives = 45/88 (51.14%), Query Frame = 1 
Query:    1 ELTPPGTPQYNSVAQRRLGLLREKTIALMQDQME-----GDSKKVWAEAMNYACNITNMSCTSSIEGNVTPYEKWYGTTAPLEHLQPF 249
            E TP  +P+YN VA+R LGL+++  +A             +    WAEA+ +ACN  N + T+S     +PYE W+G   P     PF
Sbjct:  686 EFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGTPNYPSFWAEAIAWACNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF 773
[Close]
BLAST of mRNA_H-paniculata_contig46270.11560.1 vs. uniprot
Match: A0A6H5JLU0_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLU0_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 2.600e-8
Identity = 30/88 (34.09%), Postives = 46/88 (52.27%), Query Frame = 1 
Query:    1 ELTPPGTPQYNSVAQRRLGLLREKTIALMQDQME-----GDSKKVWAEAMNYACNITNMSCTSSIEGNVTPYEKWYGTTAPLEHLQPF 249
            E TP  +P+YN VA+R LGL+++  +A             +   +WAEA+ ++CN  N + T+S     +PYE W+G   P     PF
Sbjct:   28 EFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF 115
[Close]
BLAST of mRNA_H-paniculata_contig46270.11560.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 3.300e-8
Identity = 30/88 (34.09%), Postives = 46/88 (52.27%), Query Frame = 1 
Query:    1 ELTPPGTPQYNSVAQRRLGLLREKTIALMQDQME-----GDSKKVWAEAMNYACNITNMSCTSSIEGNVTPYEKWYGTTAPLEHLQPF 249
            E TP  +P+YN VA+R LGL+++  +A             +   +WAEA+ ++CN  N + T+S     +PYE W+G   P     PF
Sbjct:  307 EFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF 394
[Close]
BLAST of mRNA_H-paniculata_contig46270.11560.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 3.320e-8
Identity = 30/88 (34.09%), Postives = 46/88 (52.27%), Query Frame = 1 
Query:    1 ELTPPGTPQYNSVAQRRLGLLREKTIALMQDQME-----GDSKKVWAEAMNYACNITNMSCTSSIEGNVTPYEKWYGTTAPLEHLQPF 249
            E TP  +P+YN VA+R LGL+++  +A             +   +WAEA+ ++CN  N + T+S     +PYE W+G   P     PF
Sbjct:  825 EFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF 912
[Close]
BLAST of mRNA_H-paniculata_contig46270.11560.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 3.330e-8
Identity = 30/88 (34.09%), Postives = 46/88 (52.27%), Query Frame = 1 
Query:    1 ELTPPGTPQYNSVAQRRLGLLREKTIALMQDQME-----GDSKKVWAEAMNYACNITNMSCTSSIEGNVTPYEKWYGTTAPLEHLQPF 249
            E TP  +P+YN VA+R LGL+++  +A             +   +WAEA+ ++CN  N + T+S     +PYE W+G   P     PF
Sbjct:  660 EFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF 747
[Close]
BLAST of mRNA_H-paniculata_contig46270.11560.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 3.330e-8
Identity = 30/88 (34.09%), Postives = 46/88 (52.27%), Query Frame = 1 
Query:    1 ELTPPGTPQYNSVAQRRLGLLREKTIALMQDQME-----GDSKKVWAEAMNYACNITNMSCTSSIEGNVTPYEKWYGTTAPLEHLQPF 249
            E TP  +P+YN VA+R LGL+++  +A             +   +WAEA+ ++CN  N + T+S     +PYE W+G   P     PF
Sbjct:  673 EFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF 760
[Close]
BLAST of mRNA_H-paniculata_contig46270.11560.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 3.330e-8
Identity = 30/88 (34.09%), Postives = 46/88 (52.27%), Query Frame = 1 
Query:    1 ELTPPGTPQYNSVAQRRLGLLREKTIALMQDQME-----GDSKKVWAEAMNYACNITNMSCTSSIEGNVTPYEKWYGTTAPLEHLQPF 249
            E TP  +P+YN VA+R LGL+++  +A             +   +WAEA+ ++CN  N + T+S     +PYE W+G   P     PF
Sbjct:  816 EFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF 903
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46270.11560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JSK5_9PHAE1.970e-939.77Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K1N9_9PHAE6.920e-935.23Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JLP8_9PHAE2.360e-832.97Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JXF7_9PHAE2.420e-835.23Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JLU0_9PHAE2.600e-834.09Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KSG8_9PHAE3.300e-834.09Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JTI6_9PHAE3.320e-834.09Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JZQ8_9PHAE3.330e-834.09Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE3.330e-834.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE3.330e-834.09Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46270contigH-paniculata_contig46270:3..257 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size255
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930382.4442868-CDS-H-paniculata_contig46270:2..2571622930382.4442868-CDS-H-paniculata_contig46270:2..257Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46270 3..257 +
1691481266.529679-CDS-H-paniculata_contig46270:2..2571691481266.529679-CDS-H-paniculata_contig46270:2..257Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46270 3..257 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46270.11560.1prot_H-paniculata_contig46270.11560.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig46270 3..257 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig46270.11560.1

>prot_H-paniculata_contig46270.11560.1 ID=prot_H-paniculata_contig46270.11560.1|Name=mRNA_H-paniculata_contig46270.11560.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=85bp
ELTPPGTPQYNSVAQRRLGLLREKTIALMQDQMEGDSKKVWAEAMNYACN
ITNMSCTSSIEGNVTPYEKWYGTTAPLEHLQPFGT
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mRNA from alignment at H-paniculata_contig46270:3..257+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig46270.11560.1 ID=mRNA_H-paniculata_contig46270.11560.1|Name=mRNA_H-paniculata_contig46270.11560.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=255bp|location=Sequence derived from alignment at H-paniculata_contig46270:3..257+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCTCACACCCCCGGGCACGCCGCAATACAACAGCGTTGCCCAAAGGCG
ACTGGGTCTACTCCGCGAGAAAACGATCGCATTGATGCAGGATCAGATGG
AGGGCGACAGCAAGAAAGTATGGGCGGAGGCGATGAACTACGCCTGCAAC
ATCACCAACATGAGCTGCACTTCGTCCATCGAAGGAAATGTTACCCCGTA
CGAGAAGTGGTACGGGACTACAGCGCCGCTGGAACACCTACAACCTTTTG
GGACG
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Coding sequence (CDS) from alignment at H-paniculata_contig46270:3..257+

>mRNA_H-paniculata_contig46270.11560.1 ID=mRNA_H-paniculata_contig46270.11560.1|Name=mRNA_H-paniculata_contig46270.11560.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at H-paniculata_contig46270:3..257+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCTCACACCCCCGGGCACGCCGCAATACAACAGCGTTGCCCAAAGGCG
ACTGGGTCTACTCCGCGAGAAAACGATCGCATTGATGCAGGATCAGATGG
AGGGCGACAGCAAGAAAGTATGGGCGGAGGCGATGAACTACGCCTGCAAC
ATCACCAACATGAGCTGCACTTCGTCCATCGAAGGAAATGTTACCCCGTA
CGAGAAGTGGTACGGGACTACAGCGCCGCTGGAACACCTACAACCTTTTG
GGACGGAGCTCACACCCCCGGGCACGCCGCAATACAACAGCGTTGCCCAA
AGGCGACTGGGTCTACTCCGCGAGAAAACGATCGCATTGATGCAGGATCA
GATGGAGGGCGACAGCAAGAAAGTATGGGCGGAGGCGATGAACTACGCCT
GCAACATCACCAACATGAGCTGCACTTCGTCCATCGAAGGAAATGTTACC
CCGTACGAGAAGTGGTACGGGACTACAGCGCCGCTGGAACACCTACAACC
TTTTGGGACG
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