mRNA_H-paniculata_contig46245.11557.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig46245.11557.1
Unique NamemRNA_H-paniculata_contig46245.11557.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig46245.11557.1 vs. uniprot
Match: D7G278_ECTSI (Tafazzin family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G278_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 1.140e-30
Identity = 51/64 (79.69%), Postives = 61/64 (95.31%), Query Frame = 1
Query:    1 RPKGQPLLTVANHASTLDDPALVAVLLPWSVVLRPSLVRWSVCSQEICFETAAISTFFGAGKVI 192
            RP+G+PLLTVANHASTLDDPA++AVLLPW +V+RP L+RWSVCSQEICFET AI++FFGAGKV+
Sbjct:   36 RPEGEPLLTVANHASTLDDPAVMAVLLPWDIVVRPRLMRWSVCSQEICFETRAIASFFGAGKVL 99          
BLAST of mRNA_H-paniculata_contig46245.11557.1 vs. uniprot
Match: A0A7S2S0C2_9STRA (Tafazzin family protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S0C2_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 7.850e-21
Identity = 38/64 (59.38%), Postives = 51/64 (79.69%), Query Frame = 1
Query:    1 RPKGQPLLTVANHASTLDDPALVAVLLPWSVVLRPSLVRWSVCSQEICFETAAISTFFGAGKVI 192
            RP+  PL+TVANHAS LDDPAL+A +LPW +VL+PS  RW++C+QE+CF+   I+ F G GKV+
Sbjct:  116 RPEDTPLITVANHASVLDDPALLAAMLPWRIVLQPSKHRWAICTQEVCFKDDLIAAFVGCGKVL 179          
BLAST of mRNA_H-paniculata_contig46245.11557.1 vs. uniprot
Match: A0A835ZF50_9STRA (Tafazzin family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF50_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 4.300e-20
Identity = 41/64 (64.06%), Postives = 48/64 (75.00%), Query Frame = 1
Query:    1 RPKGQPLLTVANHASTLDDPALVAVLLPWSVVLRPSLVRWSVCSQEICFETAAISTFFGAGKVI 192
            RP+G+PLLTV NH STLDDPAL     PWSV L P  +RW++CSQEICF  AA   FFG+GKV+
Sbjct:   38 RPEGKPLLTVGNHNSTLDDPALFGAFAPWSVDLTPRQMRWTICSQEICFMNAA---FFGSGKVL 98          
BLAST of mRNA_H-paniculata_contig46245.11557.1 vs. uniprot
Match: A0A7S1G2E3_9STRA (Tafazzin family protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G2E3_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.540e-18
Identity = 39/61 (63.93%), Postives = 47/61 (77.05%), Query Frame = 1
Query:   10 GQPLLTVANHASTLDDPALVAVLLPWSVVLRPSLVRWSVCSQEICFETAAISTFFGAGKVI 192
            G+ ++TVANH STLDDP LV  LLP SV + P L+RWSVCS+E+CF   AI TFFG G+VI
Sbjct:  102 GRAMVTVANHVSTLDDPFLVTRLLPPSVFINPRLLRWSVCSEELCFFNDAIGTFFGVGRVI 162          
BLAST of mRNA_H-paniculata_contig46245.11557.1 vs. uniprot
Match: A0A7S2NY36_9STRA (Tafazzin family protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NY36_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 4.190e-18
Identity = 34/58 (58.62%), Postives = 46/58 (79.31%), Query Frame = 1
Query:   19 LLTVANHASTLDDPALVAVLLPWSVVLRPSLVRWSVCSQEICFETAAISTFFGAGKVI 192
            ++TV+NH ST+DDP L  +LLPW + LRP  +RW++CSQEICF+  AI+  FGAGKV+
Sbjct:  154 VITVSNHNSTIDDPVLFGLLLPWDLKLRPMKIRWTLCSQEICFKNPAIAAMFGAGKVL 211          
BLAST of mRNA_H-paniculata_contig46245.11557.1 vs. uniprot
Match: A0A6H5JZ81_9PHAE (Tafazzin family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZ81_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.420e-16
Identity = 34/64 (53.12%), Postives = 46/64 (71.88%), Query Frame = 1
Query:    1 RPKGQPLLTVANHASTLDDPALVAVLLPWSVVLRPSLVRWSVCSQEICFETAAISTFFGAGKVI 192
            RP G PLLTV NH S +DDP ++  +LP  V +RP L+RW++C+QEICF+  A  T FG+ KV+
Sbjct:   95 RPSGVPLLTVCNHCSPVDDPGVLVGMLPARVTVRPELMRWTICAQEICFKWTAAGTGFGSAKVM 158          
BLAST of mRNA_H-paniculata_contig46245.11557.1 vs. uniprot
Match: A0A7R9VIQ8_9STRA (Tafazzin family protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VIQ8_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.720e-16
Identity = 32/58 (55.17%), Postives = 43/58 (74.14%), Query Frame = 1
Query:   19 LLTVANHASTLDDPALVAVLLPWSVVLRPSLVRWSVCSQEICFETAAISTFFGAGKVI 192
            LLTV+NH S +DDP L  +L+P  V  RP   RW++CSQEICF+  A++ FFGAG+V+
Sbjct:    3 LLTVSNHRSNVDDPVLFGLLMPDDVRNRPHKTRWTLCSQEICFQNPALAAFFGAGRVL 60          
BLAST of mRNA_H-paniculata_contig46245.11557.1 vs. uniprot
Match: M2XZC9_GALSU (Tafazzin family protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XZC9_GALSU)

HSP 1 Score: 78.2 bits (191), Expect = 1.970e-15
Identity = 33/64 (51.56%), Postives = 43/64 (67.19%), Query Frame = 1
Query:    1 RPKGQPLLTVANHASTLDDPALVAVLLPWSVVLRPSLVRWSVCSQEICFETAAISTFFGAGKVI 192
            RP G PLLTVANH ST+DDP LV+ ++P+  + RP  VRW  C+ ++CF     S FF  GKV+
Sbjct:  173 RPAGMPLLTVANHRSTMDDPFLVSSIIPFRDLFRPQYVRWGFCAVDMCFTNPLFSRFFNNGKVL 236          
BLAST of mRNA_H-paniculata_contig46245.11557.1 vs. uniprot
Match: A0A835ZCU4_9STRA (Tafazzin family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCU4_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 6.970e-15
Identity = 32/65 (49.23%), Postives = 48/65 (73.85%), Query Frame = 1
Query:    1 RPKGQPLLTVANHASTLDDPALVAVLLPWSVV-LRPSLVRWSVCSQEICFETAAISTFFGAGKVI 192
            R  G PL+TV+NHA  LDDP ++A L+P+ +  L+P L+R+++CSQ+ICF    + +FFGA KV+
Sbjct:  153 RGNGTPLITVSNHACPLDDPCMLAALMPFRLAALKPELMRFTICSQDICFNNGVLESFFGAAKVM 217          
BLAST of mRNA_H-paniculata_contig46245.11557.1 vs. uniprot
Match: A0A0P0VCI5_ORYSJ (Tafazzin family protein n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=A0A0P0VCI5_ORYSJ)

HSP 1 Score: 75.5 bits (184), Expect = 8.990e-15
Identity = 31/64 (48.44%), Postives = 47/64 (73.44%), Query Frame = 1
Query:    1 RPKGQPLLTVANHASTLDDPALVAVLLPWSVVLRPSLVRWSVCSQEICFETAAISTFFGAGKVI 192
            RPKG+PLLTV+NH + +DDP ++A +LP SV+L    +RW++C+ + CF    +STFF + KV+
Sbjct:  152 RPKGKPLLTVSNHVAAMDDPFVIASILPPSVMLEAQKLRWTLCASDRCFTNPILSTFFRSVKVL 215          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46245.11557.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G278_ECTSI1.140e-3079.69Tafazzin family protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2S0C2_9STRA7.850e-2159.38Tafazzin family protein n=1 Tax=Rhizochromulina ma... [more]
A0A835ZF50_9STRA4.300e-2064.06Tafazzin family protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1G2E3_9STRA2.540e-1863.93Tafazzin family protein n=1 Tax=Bicosoecida sp. CB... [more]
A0A7S2NY36_9STRA4.190e-1858.62Tafazzin family protein n=1 Tax=Leptocylindrus dan... [more]
A0A6H5JZ81_9PHAE1.420e-1653.13Tafazzin family protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7R9VIQ8_9STRA1.720e-1655.17Tafazzin family protein (Fragment) n=1 Tax=Pseudic... [more]
M2XZC9_GALSU1.970e-1551.56Tafazzin family protein n=1 Tax=Galdieria sulphura... [more]
A0A835ZCU4_9STRA6.970e-1549.23Tafazzin family protein n=1 Tax=Tribonema minus Ta... [more]
A0A0P0VCI5_ORYSJ8.990e-1548.44Tafazzin family protein n=2 Tax=Oryza sativa subsp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46245contigH-paniculata_contig46245:491..682 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.3
Seed ortholog evalue5.2e-24
Seed eggNOG ortholog2880.D7G278
KEGG rclassRC00004,RC00037
KEGG koko:K13511
KEGG ReactionR09037
KEGG Pathwayko00564,map00564
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cardiolipin acyl-chain remodeling
EggNOG OGsKOG2847@1,KOG2847@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01004
Exons1
Model size192
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930382.1179326-CDS-H-paniculata_contig46245:490..6821622930382.1179326-CDS-H-paniculata_contig46245:490..682Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46245 491..682 +
1691481266.3823123-CDS-H-paniculata_contig46245:490..6821691481266.3823123-CDS-H-paniculata_contig46245:490..682Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46245 491..682 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46245.11557.1prot_H-paniculata_contig46245.11557.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig46245 491..682 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig46245.11557.1

>prot_H-paniculata_contig46245.11557.1 ID=prot_H-paniculata_contig46245.11557.1|Name=mRNA_H-paniculata_contig46245.11557.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
RPKGQPLLTVANHASTLDDPALVAVLLPWSVVLRPSLVRWSVCSQEICFE
TAAISTFFGAGKVI
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mRNA from alignment at H-paniculata_contig46245:491..682+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig46245.11557.1 ID=mRNA_H-paniculata_contig46245.11557.1|Name=mRNA_H-paniculata_contig46245.11557.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=192bp|location=Sequence derived from alignment at H-paniculata_contig46245:491..682+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGACCCAAGGGACAGCCGCTCTTGACCGTCGCGAACCACGCCTCGACGTT GGATGACCCAGCTCTCGTGGCGGTGCTATTGCCCTGGTCAGTCGTTCTCC GGCCGAGCCTGGTTCGGTGGTCTGTCTGCAGTCAAGAGATATGCTTCGAA ACGGCGGCGATATCTACATTTTTTGGTGCCGGAAAGGTAATT
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Coding sequence (CDS) from alignment at H-paniculata_contig46245:491..682+

>mRNA_H-paniculata_contig46245.11557.1 ID=mRNA_H-paniculata_contig46245.11557.1|Name=mRNA_H-paniculata_contig46245.11557.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig46245:491..682+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGACCCAAGGGACAGCCGCTCTTGACCGTCGCGAACCACGCCTCGACGTT
GGATGACCCAGCTCTCGTGGCGGTGCTATTGCCCTGGTCAGTCGTTCTCC
GGCCGAGCCTGGTTCGGTGGTCTGTCTGCAGTCAAGAGATATGCTTCGAA
ACGGCGGCGATATCTACATTTTTTGGTGCCGGAAAGGTAATTAGACCCAA
GGGACAGCCGCTCTTGACCGTCGCGAACCACGCCTCGACGTTGGATGACC
CAGCTCTCGTGGCGGTGCTATTGCCCTGGTCAGTCGTTCTCCGGCCGAGC
CTGGTTCGGTGGTCTGTCTGCAGTCAAGAGATATGCTTCGAAACGGCGGC
GATATCTACATTTTTTGGTGCCGGAAAGGTAATT
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