mRNA_H-paniculata_contig4623.11553.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4623.11553.1 vs. uniprot
Match: Q8QKV7_ESV1K (Histidine kinase n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QKV7_ESV1K) HSP 1 Score: 83.6 bits (205), Expect = 1.470e-13 Identity = 48/136 (35.29%), Postives = 74/136 (54.41%), Query Frame = 3
Query: 3 DDVRANRLILCKMLESLNVEVEVAKDGAEAVDACLRSCFSAVFMDITMPGGIDGFEAARLIRSGQGPNRDTHIIAVTAMIDLGAYAERRERFRCEGTPGETTSGSMTDILIKPVTRKILFAKIKQWMTPEEVAWMR 410
DD + NRL+ K+L+S E+A G +A++AC S +S + MD MP +DG EA + IR G G N++T I+ +TA + A E C G D L KP+++ +L+ K+ + +E+AWMR
Sbjct: 633 DDNKVNRLVASKLLQSFGCLTELADHGLQAIEACDVSSYSLIIMDKVMPV-MDGVEATKEIRRGNGLNKNTKILFLTATVSTEAILE------CNRAGGN-------DFLTKPLSKHLLYDKLTDNLVVKEIAWMR 754
BLAST of mRNA_H-paniculata_contig4623.11553.1 vs. uniprot
Match: A0A7C1U406_9GAMM (Histidine kinase n=1 Tax=Thiotrichales bacterium TaxID=2026796 RepID=A0A7C1U406_9GAMM) HSP 1 Score: 79.7 bits (195), Expect = 2.810e-12 Identity = 50/133 (37.59%), Postives = 72/133 (54.14%), Query Frame = 3
Query: 3 DDVRANRLILCKMLESLNVEVEVAKDGAEAVDACLRSCFSAVFMDITMPGGIDGFEAARLIRSGQGPNRDTHIIAVTAMIDLGAYAERRERFRCEGTPGETTSGSMTDILIKPVTRKILFAKIKQWMT--PEE 395
DD + NR ++ + SL V V+ A DG EA+ + + MDI MPG ++G E R IR G GPNRDT +IA+TA + +A E+F+ G + + L+KPV+ L+ IK+W PEE
Sbjct: 674 DDNQINRKLISLQIRSLGVRVDSAPDGTEALALAQNRHYDLILMDIHMPG-MNGEEVTRAIRDGNGPNRDTPVIALTANV----FAGDTEKFQQSG---------INECLVKPVSEYHLWEVIKRWTQALPEE 792
BLAST of mRNA_H-paniculata_contig4623.11553.1 vs. uniprot
Match: UPI00041E40BC (response regulator n=1 Tax=Rubritepida flocculans TaxID=182403 RepID=UPI00041E40BC) HSP 1 Score: 79.0 bits (193), Expect = 4.910e-12 Identity = 49/125 (39.20%), Postives = 65/125 (52.00%), Query Frame = 3
Query: 3 DDVRANRLILCKMLESLNVEVEVAKDGAEAVDACLRSCFSAVFMDITMPGGIDGFEAARLIRSGQGPNRDTHIIAVTAMIDLGAYAERRERFRCEGTPGETTSGSMTDILIKPVTRKILFAKIKQ 377
+D N+L++ +L+ LN EV VA DGA AV R F + MD+ MPG +DG EA R IR+GQGPNR II +TA + RE M D L KPV R L ++++
Sbjct: 751 EDNATNQLVMTTLLDKLNCEVVVAGDGAAAVAEAERQPFDLILMDLQMPG-MDGLEATRRIRAGQGPNRRALIIGLTAAVGPSFEKMCRE-------------AGMDDYLSKPVQRPALIERLER 861
BLAST of mRNA_H-paniculata_contig4623.11553.1 vs. uniprot
Match: A0A1I2EWF0_9RHOB (Histidine kinase n=1 Tax=Sulfitobacter brevis TaxID=74348 RepID=A0A1I2EWF0_9RHOB) HSP 1 Score: 78.2 bits (191), Expect = 8.630e-12 Identity = 48/123 (39.02%), Postives = 67/123 (54.47%), Query Frame = 3
Query: 3 DDVRANRLILCKMLESLNVEVEVAKDGAEAVDACLRSCFSAVFMDITMPGGIDGFEAARLIRSGQGPNRDTHIIAVTAMIDLGAYAERRERFRCEGTPGETTSGSMTDILIKPVTRKILFAKI 371
DD R NR +L ML + +V +A G EAV F A+ MDI+MP ++G +A ++IRSGQGPN DTH++A TA A + R F+ G MT + KP+ K+L A +
Sbjct: 611 DDNRINRDLLEAMLHRMGHDVMLAAGGIEAVQFATEHKFDAILMDISMPD-MNGIQATQMIRSGQGPNSDTHVVAATAH----ALPKERAEFKAAG---------MTGFIQKPLDMKVLAAAL 719
BLAST of mRNA_H-paniculata_contig4623.11553.1 vs. uniprot
Match: A0A238LD98_9RHOB (Histidine kinase n=1 Tax=Flavimaricola marinus TaxID=1819565 RepID=A0A238LD98_9RHOB) HSP 1 Score: 77.0 bits (188), Expect = 2.030e-11 Identity = 47/125 (37.60%), Postives = 67/125 (53.60%), Query Frame = 3
Query: 3 DDVRANRLILCKMLESLNVEVEVAKDGAEAVDACLRSCFSAVFMDITMPGGIDGFEAARLIRSGQGPNRDTHIIAVTAMIDLGAYAERRERFRCEGTPGETTSGSMTDILIKPVTRKILFAKIKQ 377
+D + NR ++ +ML ++ V A DG + VDA + F + MDI MP +DG EA R IR+G GPN I A+TA A AE R F +G MTD+L KP+ + L A +++
Sbjct: 612 EDNQINRQVVREMLSAMGHHVTEAHDGKQGVDAAQSTAFDVILMDINMPN-MDGREATRAIRAGDGPNAQVPIFALTA----NAIAEDRANFLADG---------MTDVLTKPLRKAALDAMLRR 722
BLAST of mRNA_H-paniculata_contig4623.11553.1 vs. uniprot
Match: A0A2T6AY99_9RHOB (Histidine kinase n=1 Tax=Allosediminivita pacifica TaxID=1267769 RepID=A0A2T6AY99_9RHOB) HSP 1 Score: 75.9 bits (185), Expect = 4.320e-11 Identity = 51/125 (40.80%), Postives = 66/125 (52.80%), Query Frame = 3
Query: 3 DDVRANRLILCKMLESLNVEVEVAKDGAEAVDACLRSCFSAVFMDITMPGGIDGFEAARLIRSGQGPNRDTHIIAVTAMIDLGAYAERRERFRCEGTPGETTSGSMTDILIKPVTRKILFAKIKQ 377
+D NR I MLE+ +V A++GA V+ F + MDI+MP +DG EAAR IRSG G +RDT I+A+TA A E RFR +G M L KP+ RK L A + Q
Sbjct: 466 EDNETNRFIARAMLEAAGHQVTEARNGAVGVELAEARHFDVILMDISMPV-MDGIEAARRIRSGNGASRDTPIVAITAH----ALPEELARFRSQG---------MEACLTKPLDRKALLATLAQ 576
BLAST of mRNA_H-paniculata_contig4623.11553.1 vs. uniprot
Match: A0A6N2E414_9SPIO (Response regulator n=1 Tax=Spirochaetaceae bacterium TaxID=1898206 RepID=A0A6N2E414_9SPIO) HSP 1 Score: 70.9 bits (172), Expect = 4.540e-11 Identity = 46/125 (36.80%), Postives = 70/125 (56.00%), Query Frame = 3
Query: 3 DDVRANRLILCKMLESLNVEVEVAKDGAEAVDACLRSCFSAVFMDITMPGGIDGFEAARLIRSGQGP--NRDTHIIAVTAMIDLGAYAERRERFRCEGTPGETTSGSMTDILIKPVTRKILFAKI 371
DD + NR++ ++LE+L +VA DG +AV+ + + AV MD+ MP +DGFEA RLIRSG+ N + IIA+TA YA ++ +C T+ M D + KP+ + L K+
Sbjct: 33 DDNKINRIVAQRLLETLGYSCDVAVDGRKAVEQLELNSYKAVLMDVQMPE-LDGFEATRLIRSGESKVLNHEIPIIALTA------YAGEDDKAKC-------TAAGMNDYVGKPLVLEELKEKL 143
BLAST of mRNA_H-paniculata_contig4623.11553.1 vs. uniprot
Match: UPI000833AC8D (PAS domain S-box protein n=1 Tax=Marinobacterium profundum TaxID=1714300 RepID=UPI000833AC8D) HSP 1 Score: 75.1 bits (183), Expect = 9.400e-11 Identity = 46/133 (34.59%), Postives = 71/133 (53.38%), Query Frame = 3
Query: 3 DDVRANRLILCKMLESLNVEVEVAKDGAEAVDACLRSCFSAVFMDITMPGGIDGFEAARLIRSGQGPNRDTHIIAVTAMIDLGAYAERRERFRCEGTPGETTSGSMTDILIKPVTRKILFAKIKQWMTPEEVA 401
+D+ ANRL+ +++ +EVE+A DG EA++ S F + MD+ MP ++G EA +RSG G N DT IIA+TA AE+ E RC + M D + KP + L + ++ + +E A
Sbjct: 878 EDIEANRLVATELMSRRGLEVEIACDGLEALEKAQDSLFDVILMDVRMPY-MNGIEAVERLRSGDGVNADTPIIALTA------NAEKSEIDRC-------FAAGMNDFISKPFDVERLLGLLAEFCSRDEAA 996
BLAST of mRNA_H-paniculata_contig4623.11553.1 vs. uniprot
Match: UPI00164523E6 (response regulator n=1 Tax=Pseudomonas TaxID=286 RepID=UPI00164523E6) HSP 1 Score: 74.3 bits (181), Expect = 1.440e-10 Identity = 50/127 (39.37%), Postives = 67/127 (52.76%), Query Frame = 3
Query: 3 DDVRANRLILCKMLESLNVEVEVAKDGAEAVDACLRSCFSAVFMDITMPGGIDGFEAARLIRSGQGPNRDTHIIAVTAMIDLGAYAERRERFRCEGTPGETTSGSMTDILIKPVTRKILFAKIKQWM 383
+D N+++ ML L +V++A GAEA++ R CF V MD MP +DG+EA+R IR G G D I+A+TA A E RER R G M D L KP R+ L A I+ W+
Sbjct: 669 EDNPVNQMVAKGMLIKLGCQVQIAAQGAEALECLERECFDMVLMDCNMPV-MDGYEASRRIRQG-GRWPDLPIVALTA----NAMPEERERCRAAG---------MNDYLAKPFRREELLALIEHWV 780
BLAST of mRNA_H-paniculata_contig4623.11553.1 vs. uniprot
Match: A0A8J3EBG4_9PROT (Histidine kinase n=1 Tax=Caldovatus sediminis TaxID=2041189 RepID=A0A8J3EBG4_9PROT) HSP 1 Score: 74.3 bits (181), Expect = 1.620e-10 Identity = 53/133 (39.85%), Postives = 65/133 (48.87%), Query Frame = 3
Query: 3 DDVRANRLILCKMLESLNVEVEVAKDGAEAVDACLRSCFSAVFMDITMPGGIDGFEAARLIRSGQGPNRDTHIIAVTAMIDLGAYAERRERFRCEGTPGETTSGSMTDILIKPVTRKILFAKIKQWMTPEEVA 401
DDV ANRL+ C ML++ E GAEAV A R F AV MD+ MPG +DG EA+R IR+ GP IIA+TA A ++ E R G G L+KPV R L + P A
Sbjct: 767 DDVPANRLVTCAMLDAAGHEAVAVCGGAEAVAAVEREDFDAVLMDVQMPG-MDGLEASRRIRALPGPRGRVPIIALTA----AALPDQIEACRAAGMDGH---------LVKPVERGALAGALGLLARPARAA 885 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4623.11553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4623.11553.1 >prot_H-paniculata_contig4623.11553.1 ID=prot_H-paniculata_contig4623.11553.1|Name=mRNA_H-paniculata_contig4623.11553.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=138bp MLESLNVEVEVAKDGAEAVDACLRSCFSAVFMDITMPGGIDGFEAARLIRback to top mRNA from alignment at H-paniculata_contig4623:2206..3930- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4623.11553.1 ID=mRNA_H-paniculata_contig4623.11553.1|Name=mRNA_H-paniculata_contig4623.11553.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1725bp|location=Sequence derived from alignment at H-paniculata_contig4623:2206..3930- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4623:2206..3930- >mRNA_H-paniculata_contig4623.11553.1 ID=mRNA_H-paniculata_contig4623.11553.1|Name=mRNA_H-paniculata_contig4623.11553.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at H-paniculata_contig4623:2206..3930- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |