mRNA_H-paniculata_contig11806.1155.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11806.1155.1
Unique NamemRNA_H-paniculata_contig11806.1155.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11806.1155.1 vs. uniprot
Match: A0A6H5L347_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L347_9PHAE)

HSP 1 Score: 206 bits (525), Expect = 2.910e-55
Identity = 129/243 (53.09%), Postives = 158/243 (65.02%), Query Frame = 1 
Query:    4 LQRIAGIRDWYKATVCNLEQLGGVRISVRGLSGLVTGGEQRGGADGRHEQGLELMVDLGFGQVMEVTLSAEDGSLGSVQVYTSSTNPHQQQPNGGSTASASTSEAGY--LTQADVIELVAIADDLQAPANLRLLVREAFSRSECSKLRVEHVRQMRPRYLVGYRAGPREVTMTMPAGIVALFRLRSDYPRVAGGAELVALKGVGGWTADETEKLCARINLLALPTLMDIMDHLEEAVTAMQGG 726
            ++R  GIRDWY ATV  +E LGGVR+S R L G         GA GR E G+E MV LG G  MEVT+SA DG L S Q+       H Q   GG  A      AG+  ++ +++ E+   AD L AP NL  LV EA SR+ C+ +R EHVRQ+R RYL GYR+  REVT+TM AGIVA F L +DYP+V GGAE+VAL GVGGW+A ET++LC R+N +ALPTLM  MD LE  V AM+GG
Sbjct:  287 VRRNTGIRDWYAATVAEVENLGGVRLSHRLLFGA--------GAGGRVE-GMEFMVGLGSGLTMEVTVSAVDGKLSSAQLC------HGQ---GGGGA------AGFAGISPSELEEMRRAADALPAPQNLGKLVIEALSRATCAAVREEHVRQVRRRYLTGYRSPSREVTVTMGAGIVACFHLAADYPKVVGGAEVVALTGVGGWSAHETKQLCRRVNDMALPTLMATMDVLEAEVEAMEGG 505
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11806.1155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L347_9PHAE2.910e-5553.09Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11806contigH-paniculata_contig11806:2353..6244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size2079
Cds size564
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11806.1155.1prot_H-paniculata_contig11806.1155.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11806 3703..6079 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928890.9487624-UTR-H-paniculata_contig11806:2352..37021622928890.9487624-UTR-H-paniculata_contig11806:2352..3702Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11806 2353..3702 -
1691480658.4443507-UTR-H-paniculata_contig11806:2352..37021691480658.4443507-UTR-H-paniculata_contig11806:2352..3702Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11806 2353..3702 -
1622928891.0417824-UTR-H-paniculata_contig11806:6079..62441622928891.0417824-UTR-H-paniculata_contig11806:6079..6244Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11806 6080..6244 -
1691480658.4928656-UTR-H-paniculata_contig11806:6079..62441691480658.4928656-UTR-H-paniculata_contig11806:6079..6244Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11806 6080..6244 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928890.996033-CDS-H-paniculata_contig11806:3702..38641622928890.996033-CDS-H-paniculata_contig11806:3702..3864Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11806 3703..3864 -
1691480658.4534626-CDS-H-paniculata_contig11806:3702..38641691480658.4534626-CDS-H-paniculata_contig11806:3702..3864Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11806 3703..3864 -
1622928891.0119257-CDS-H-paniculata_contig11806:5147..55251622928891.0119257-CDS-H-paniculata_contig11806:5147..5525Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11806 5148..5525 -
1691480658.4625485-CDS-H-paniculata_contig11806:5147..55251691480658.4625485-CDS-H-paniculata_contig11806:5147..5525Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11806 5148..5525 -
1622928891.026382-CDS-H-paniculata_contig11806:6055..60791622928891.026382-CDS-H-paniculata_contig11806:6055..6079Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11806 6056..6079 -
1691480658.4804115-CDS-H-paniculata_contig11806:6055..60791691480658.4804115-CDS-H-paniculata_contig11806:6055..6079Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11806 6056..6079 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11806.1155.1

>prot_H-paniculata_contig11806.1155.1 ID=prot_H-paniculata_contig11806.1155.1|Name=mRNA_H-paniculata_contig11806.1155.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=188bp
MVDLGFGQVMEVTLSAEDGSLGSVQVYTSSTNPHQQQPNGGSTASASTSE
AGYLTQADVIELVAIADDLQAPANLRLLVREAFSRSECSKLRVEHVRQMR
PRYLVGYRAGPREVTMTMPAGIVALFRLRSDYPRVAGGAELVALKGVGGW
TADETEKLCARINLLALPTLMDIMDHLEEAVTAMQGG*
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mRNA from alignment at H-paniculata_contig11806:2353..6244-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11806.1155.1 ID=mRNA_H-paniculata_contig11806.1155.1|Name=mRNA_H-paniculata_contig11806.1155.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3892bp|location=Sequence derived from alignment at H-paniculata_contig11806:2353..6244- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTTGCAAAGGATCGCTGGCATCCGAGACTGGTACAAAGCCACGGTTTG
CAACCTGGAGCAACTCGGCGGTGTGCGGATATCGGTGCGAGGGCTGTCGG
GCTTGGTCACTGGGGGGGAACAACGAGGCGGAGCTGATGGCCGACACGAG
CAAGGACTAGAGCTCATGGTGGATCTTGGTTTCGGCCAGGTAAGCTGTTT
CTTCGGGAAGGGTGGGTGGACAGAGGGGAGTTAGTTGCACAACAATTCGG
AACCTGATATTATAACTTCATTGTATCCATGTTGAGGCTATGTAGCTGAC
TTTAATATGCAACTGTATACACTTATCAGCAAAATGAATTGAAAAGGGGG
GGAGGGGGGGGGGGTGCATTTTTGGTTTTGCTTTTTGGAGTTGATTTTCG
TTTGATGTTCGTTTGGTGTGAATTTCGGGTTGGGTTGGGTTTAGTTTCAT
TTAGATTAATTTAGTTTTAGTCTTTGCTACGGAAATGTAGGATAGGTCTC
AAATGGCGTGTGTATGGATACCTGGGATTAATAATTTAACAAAACGCCTC
CCTCCTTTTATATGAAACTCCCAGAGGGGGCACAATTTGTAACAGAAGAA
GGACGAAAGTGGCACGACGTATAACGCTTCGTAAAGGTTCAACTTAACCG
GAAGCAACAGCGCATAAGCCTGCATTTGTACTTCTGCATGTGCTTGCCTT
GAAAATAATATATATTCAGGTCATGGAAGTGACTCTGTCTGCAGAAGACG
GTAGCCTCGGCTCCGTCCAAGTGTACACCAGCAGCACCAACCCGCACCAA
CAACAACCGAACGGCGGCAGCACAGCATCAGCATCAACATCAGAAGCCGG
CTACCTCACGCAAGCTGATGTGATCGAGCTCGTGGCCATCGCGGACGACC
TCCAAGCGCCCGCCAACCTTCGCCTGCTCGTGCGCGAGGCGTTCAGCCGC
AGCGAGTGCTCCAAGCTGCGTGTGGAGCACGTCCGGCAGATGCGACCGCG
GTACCTAGTGGGGTACAGGGCCGGGCCGCGAGAGGTGACCATGACGATGC
CGGCGGGGATCGTGGCGTTGTTCAGGCTGCGCTCGGACTACCCCAGGGTG
AGATTTTCGAGGACTGATGGTAGTGTCTTCATGGGGAGGTGGGGGGACGG
GTACTCCATTTTTGCGCAAGGGTACATGCCCTCTGTTTGGGGTTGAAACC
GATTGTTCATGAAAGCGACGAAAGGGGTGGTCTCAAGTACTTACGTATCG
GAGCAAGTAACATAACGTAGCTGGTTGACGTTGACGCGGTCCAAATGTTC
GGGTAGGCACTTTCAGAAGTGTCATGCATCAAAAGTGTCCTGACATGACG
TCCCTGTCATGGAACGAGTTGGCAGCAGCGGCGGCGGCGGCGGGGGTGGT
GGTGGTGGTGGTGTTTAGCGGTATAAGGATGGAATATGAGAAGGTGGTCG
TGATTTGGATCGGGGTATCACGGTGGGGCCGGGGAATGCGCTGTAATTTC
ATGTTTTTTAGTTTTTGATGCATGCAGCGTATCGTCGTTTATTTTGTCGA
TTGTTGGAGTATGCCAAAATTTATACAGAACCAAGTAGGGATCGAGCCAG
CTGACCTTGAGAGCAATCGATTCTTGGGTTTTACGGGGCGAAAATCAGGG
CATGTTTCTGCCCGAGATGGAGCGCTTGCTGCTTGCGTCCGTACGTACCT
CTCTGCATCTCATGCTTGTTTTTGGCCTTTGAAAACGTACTGACGACTCA
ACTATCAATGATATTCGGAACAATTTCTATTTAGATTAAGTATCATGCTA
GTAGGCAGGTTCCAGTGCTGAAACAACACAGCGGCGGGAGTCTCTGATCT
AGTGGTGCGTGCGGTCGGTAGTAACGGTAACTAATTTACGGACGTTTGGA
ACTCGAAAGTTCTTCGAAGTACTTCATTTTATTGCGTTTGCGCAAACACT
ACGGGAGACGCTGAATGAGCAGATTGTGTGCTTGATTTTGACCAGCACTC
TGTACTCCTTGTAAGCTTATATGAAACGTTCTACAGAAGTAGGTTCTCAA
GTGCTCCAGTACCGTACGTATATCTATATACTGGAGTATATCTGTGTACA
TCTATGGAGGTCTATGTAACACGCCTCAGCATGTTGTCCCCTTTGTTCCT
CTTTGCGGACGTTCGTCGGCTTACCGTGACTTTTGTTCGTCTCCAGTCAC
GTTCATGTCTCTTTTTTCTGGTGTGTTTTCCATTTTCTTTCCTTTCTTCT
TCCCTTGTGCATTGCCGTTTCGTTTTCCCCCCATAAAACATGTATCGATT
CAACTTTATAGTTGTTTTTACCATTGTTTTTTCCTTCGTTTTTGTCCCGG
CTACTTGGCCAACAACTGCCAACTACGCAGGTCGCGGGCGGTGCGGAGCT
CGTTGCCCTGAAGGGTGTAGGCGGGTGGACTGCCGATGAGACGGAAAAGT
TGTGTGCCCGCATCAACCTACTGGCTCTCCCGACGCTAATGGATATAATG
GATCACCTAGAAGAGGCCGTGACCGCGATGCAGGGCGGATGAAAAAAATC
TAAACAGAGTTTTTTTCGAGGGGAAATACGTATCATAACCCGTCGCGTTT
TCTGTTTGTCATGTCTCGTCATTTTTTCGTCCTTTTTTTTGTTTTTGTTG
GCGTCCATTTTGCTTTTTTGTGTTTCGTCGCCCCTTCTTCCTCCCTTTTG
TTTTTTCACATTCGTTTTTTCGGTTTTCTCTTCTGTTTTTTTTATCATGG
AGGGTGTTGCCGACTTTCTATTTCTGTATGGTCGGGTTGGAAAAGACTTT
TTCGGTTGAATGGTGCATATTCACGGCTTGTACAGTATGCTCGAGCCAAC
CATAGGCGGCTTTCAATCCGGTGGGGCGTTGTTCTTGTAGTATCTATCCT
ATTTTTTCATTGGGAGTAATAGTGTCGGTTAAAAATATATAGGGAATGTC
AGTTTCATGATGGACGAACGCCGAGGGTGCGATATCATTTTGTTTTCGCA
GCAGTTGTTTTCGAGACATAAGTGGAGACTCTTTTGTGCACACAAACTGA
CTACACTGTGTCTTGGAAAGAGTCTGTCTATCTAATGACAGATGGACATT
AAGAAAATATGAAGGTCTGACCAATGACACAAGTTTTGGTTTCACAAGCG
CCCGAGCTGTGGATGAAATTGAGTATGGAAATAGTGTATCACGCGGGGTA
CTTATGCTTATGTTGCCATCGTTGAATACACTACTATACCAACAGAGAGA
GAGAGAACGAGAGAGTTAACGGGTGCCTGGGATTTTTGGTTGGCAATCTC
TTCAATGAGATCATCTGATTGGTCGAAATATCACGGTTGGCATAGTTCAA
AGGCGAGAGAAACAAATGTGCAAGAGGTTTCACGGTTTTTCAACTTGTAC
ACGCGTGACCACAAGAACAAAACGCGGAATCCGTCTAAATTGCTGATCTC
ATCGATGCTGCTTTCTGTGTTTTTTATCAATCGGTTCGGGTATCAATAGG
AACGCAGAAAACTCTGAGTCGCTGCTAGTGTATGTACCATGATAGAGATA
CCGGTCGGTTCTGTTCTGGTTATTATGTATGTCCAAATGTCCGCCGGGCC
AAGTCAAGAGAACAACCTAAAAAAAACATGGGCTTCTAAGGCTGCCTAGG
TGCCATTTAGGTGGACGCGCGCGTCGGGGGAGGCGGTGATGATGTAATGC
TTTCTATAAATTAGCTCTTAGACCATTGATTACGCATCCTGGAGAGGCAG
GAGTGTTGTGTCCATGGGAGCGATCGACGATGACAGTCAATCGCTCCTAC
CTACATGTCATCGAGGACCCAGAAAAAGGAATATATTTAGCAAAACTTCA
TAGAAACTAAGGTTGATTGTGTTCGTTTTCGTAGTGTACGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig11806:2353..6244-

>mRNA_H-paniculata_contig11806.1155.1 ID=mRNA_H-paniculata_contig11806.1155.1|Name=mRNA_H-paniculata_contig11806.1155.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1128bp|location=Sequence derived from alignment at H-paniculata_contig11806:2353..6244- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGGATCTTGGTTTCGGCCAGATGGTGGATCTTGGTTTCGGCCAGGT
CATGGAAGTGACTCTGTCTGCAGAAGACGGTAGCCTCGGCTCCGTCCAAG
TGTACACCAGCAGCACCAACCCGCACCAACAACAACCGAACGGCGGCAGC
ACAGCATCAGCATCAACATCAGAAGCCGGCTACCTCACGCAAGCTGATGT
GATCGAGCTCGTGGCCATCGCGGACGACCTCCAAGCGCCCGCCAACCTTC
GCCTGCTCGTGCGCGAGGCGTTCAGCCGCAGCGAGTGCTCCAAGCTGCGT
GTGGAGCACGTCCGGCAGATGCGACCGCGGTACCTAGTGGGGTACAGGGC
CGGGCCGCGAGAGGTGACCATGACGATGCCGGCGGGGATCGTGGCGTTGT
TCAGGCTGCGCTCGGACTACCCCAGGGTCATGGAAGTGACTCTGTCTGCA
GAAGACGGTAGCCTCGGCTCCGTCCAAGTGTACACCAGCAGCACCAACCC
GCACCAACAACAACCGAACGGCGGCAGCACAGCATCAGCATCAACATCAG
AAGCCGGCTACCTCACGCAAGCTGATGTGATCGAGCTCGTGGCCATCGCG
GACGACCTCCAAGCGCCCGCCAACCTTCGCCTGCTCGTGCGCGAGGCGTT
CAGCCGCAGCGAGTGCTCCAAGCTGCGTGTGGAGCACGTCCGGCAGATGC
GACCGCGGTACCTAGTGGGGTACAGGGCCGGGCCGCGAGAGGTGACCATG
ACGATGCCGGCGGGGATCGTGGCGTTGTTCAGGCTGCGCTCGGACTACCC
CAGGGTCGCGGGCGGTGCGGAGCTCGTTGCCCTGAAGGGTGTAGGCGGGT
GGACTGCCGATGAGACGGAAAAGTTGTGTGCCCGCATCAACCTACTGGCT
CTCCCGACGCTAATGGATATAATGGATCACCTAGAAGAGGCCGTGACCGC
GATGCAGGGCGGATGAGTCGCGGGCGGTGCGGAGCTCGTTGCCCTGAAGG
GTGTAGGCGGGTGGACTGCCGATGAGACGGAAAAGTTGTGTGCCCGCATC
AACCTACTGGCTCTCCCGACGCTAATGGATATAATGGATCACCTAGAAGA
GGCCGTGACCGCGATGCAGGGCGGATGA
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