mRNA_H-paniculata_contig46108.11526.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig46108.11526.1
Unique NamemRNA_H-paniculata_contig46108.11526.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig46108.11526.1 vs. uniprot
Match: A0A6H5KTC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC5_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 5.720e-15
Identity = 30/37 (81.08%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:    1 QLPVHCAAAGGNLNILAWLVEDRCCPLFLDKDKKVCL 111
            +LPVHCAA+GGNLNILAWLV+DRCCPLFLD++KK+ L
Sbjct:  479 ELPVHCAASGGNLNILAWLVDDRCCPLFLDREKKIAL 515
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BLAST of mRNA_H-paniculata_contig46108.11526.1 vs. uniprot
Match: D8LDM9_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDM9_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 9.230e-15
Identity = 29/34 (85.29%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 QLPVHCAAAGGNLNILAWLVEDRCCPLFLDKDKK 102
            +LPVHCAA+GGNLNILAWLV+DRCCPLFLD++KK
Sbjct:  155 ELPVHCAASGGNLNILAWLVDDRCCPLFLDREKK 188
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BLAST of mRNA_H-paniculata_contig46108.11526.1 vs. uniprot
Match: A0A6H5KUU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU5_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 4.880e-11
Identity = 23/33 (69.70%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:    1 QLPVHCAAAGGNLNILAWLVEDRCCPLFLDKDK 99
            +LPVHCAAAGGN++++ WLVEDRCCP+F+D +K
Sbjct:  687 ELPVHCAAAGGNVSLMMWLVEDRCCPIFMDDEK 719
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BLAST of mRNA_H-paniculata_contig46108.11526.1 vs. uniprot
Match: D7FYF4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF4_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 1.250e-10
Identity = 22/33 (66.67%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:    1 QLPVHCAAAGGNLNILAWLVEDRCCPLFLDKDK 99
            +LPVHCAAAGGN++++ WL+EDRCCP+F+D +K
Sbjct:  617 ELPVHCAAAGGNVSLMMWLLEDRCCPIFMDDEK 649
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BLAST of mRNA_H-paniculata_contig46108.11526.1 vs. uniprot
Match: A0A6H5KTY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY3_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 8.140e-10
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 QLPVHCAAAGGNLNILAWLVEDRCCPLFLDKDKKV 105
            +LPVHCAAAGGN+ +L+WLVE+  CP+F D DKKV
Sbjct:  606 ELPVHCAAAGGNVGLLSWLVEELGCPIFTDSDKKV 640
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BLAST of mRNA_H-paniculata_contig46108.11526.1 vs. uniprot
Match: D7FYF5_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF5_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 9.940e-9
Identity = 23/35 (65.71%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    1 QLPVHCAAAGGNLNILAWLVEDRCCPLFLDKDKKV 105
            +LPVHCAAAGGN+ +L+WLVE+  C +F D DKKV
Sbjct:  604 ELPVHCAAAGGNVGLLSWLVEELGCSIFTDSDKKV 638
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BLAST of mRNA_H-paniculata_contig46108.11526.1 vs. uniprot
Match: A0A836CC14_9STRA (FYVE-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC14_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.240e-6
Identity = 20/36 (55.56%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    4 LPVHCAAAGGNLNILAWLVEDRCCPLFLDKDKKVCL 111
            LPVHCAA GG++ +LAWL+E++ CPLF D  + + L
Sbjct:  135 LPVHCAAEGGSMALLAWLLEEKHCPLFKDLSRTIAL 170
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BLAST of mRNA_H-paniculata_contig46108.11526.1 vs. uniprot
Match: A0A7S4S024_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S024_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 9.760e-6
Identity = 18/26 (69.23%), Postives = 22/26 (84.62%), Query Frame = 1 
Query:    7 PVHCAAAGGNLNILAWLVEDRCCPLF 84
            PVHCAA GGNL +L WLV+ RCCP++
Sbjct:  604 PVHCAAMGGNLEVLKWLVDLRCCPIY 629
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BLAST of mRNA_H-paniculata_contig46108.11526.1 vs. uniprot
Match: K8Z0F4_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z0F4_NANGC)

HSP 1 Score: 46.2 bits (108), Expect = 5.730e-5
Identity = 18/32 (56.25%), Postives = 23/32 (71.88%), Query Frame = 1 
Query:    1 QLPVHCAAAGGNLNILAWLVEDRCCPLFLDKD 96
            + PVHCAA GGNL++L WLV +  CPL+   D
Sbjct:   79 EYPVHCAAEGGNLDLLRWLVNELGCPLYETAD 110
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46108.11526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KTC5_9PHAE5.720e-1581.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDM9_ECTSI9.230e-1585.29FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KUU5_9PHAE4.880e-1169.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYF4_ECTSI1.250e-1066.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTY3_9PHAE8.140e-1068.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYF5_ECTSI9.940e-965.71FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A836CC14_9STRA1.240e-655.56FYVE-type domain-containing protein n=1 Tax=Tribon... [more]
A0A7S4S024_9STRA9.760e-669.23Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
K8Z0F4_NANGC5.730e-556.25Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46108contigH-paniculata_contig46108:1024..1149 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue5.1e-12
Seed eggNOG ortholog2880.D8LDM9
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.lipid binding
EggNOG OGsKOG1729@1,KOG1729@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size126
Cds size126
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930377.839724-CDS-H-paniculata_contig46108:1023..11491622930377.839724-CDS-H-paniculata_contig46108:1023..1149Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46108 1024..1149 -
1691481264.6206694-CDS-H-paniculata_contig46108:1023..11491691481264.6206694-CDS-H-paniculata_contig46108:1023..1149Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46108 1024..1149 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46108.11526.1prot_H-paniculata_contig46108.11526.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig46108 1024..1149 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig46108.11526.1

>prot_H-paniculata_contig46108.11526.1 ID=prot_H-paniculata_contig46108.11526.1|Name=mRNA_H-paniculata_contig46108.11526.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=42bp
QLPVHCAAAGGNLNILAWLVEDRCCPLFLDKDKKVCLFCPM*
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mRNA from alignment at H-paniculata_contig46108:1024..1149-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig46108.11526.1 ID=mRNA_H-paniculata_contig46108.11526.1|Name=mRNA_H-paniculata_contig46108.11526.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=126bp|location=Sequence derived from alignment at H-paniculata_contig46108:1024..1149- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCTCCCAGTTCACTGCGCGGCGGCTGGAGGAAACTTGAATATATTGGC
GTGGCTGGTGGAGGACCGCTGCTGCCCTCTCTTTCTGGACAAGGATAAGA
AGGTGTGTTTGTTTTGCCCCATGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig46108:1024..1149-

>mRNA_H-paniculata_contig46108.11526.1 ID=mRNA_H-paniculata_contig46108.11526.1|Name=mRNA_H-paniculata_contig46108.11526.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=252bp|location=Sequence derived from alignment at H-paniculata_contig46108:1024..1149- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCTCCCAGTTCACTGCGCGGCGGCTGGAGGAAACTTGAATATATTGGC
GTGGCTGGTGGAGGACCGCTGCTGCCCTCTCTTTCTGGACAAGGATAAGA
AGGTGTGTTTGTTTTGCCCCATGTGACAGCTCCCAGTTCACTGCGCGGCG
GCTGGAGGAAACTTGAATATATTGGCGTGGCTGGTGGAGGACCGCTGCTG
CCCTCTCTTTCTGGACAAGGATAAGAAGGTGTGTTTGTTTTGCCCCATGT
GA
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