prot_H-paniculata_contig46103.11525.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig46103.11525.1
Unique Nameprot_H-paniculata_contig46103.11525.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length69
Homology
BLAST of mRNA_H-paniculata_contig46103.11525.1 vs. uniprot
Match: A0A2N9GEZ3_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GEZ3_FAGSY)

HSP 1 Score: 76.6 bits (187), Expect = 9.800e-15
Identity = 35/67 (52.24%), Postives = 46/67 (68.66%), Query Frame = 0
Query:    3 GGSRFAIIFVDDYSRMRKVYTLRQKSEALCALKQFERDVARANGLRIRRIRSDQGGEYTGKPFRQFC 69
            GG RF +IFVDDYSR  K+Y LR K EAL  L +++ +V      RI+R+R+D+GGEY   PF +FC
Sbjct:  293 GGKRFYVIFVDDYSRFTKLYLLRSKDEALEMLIKYKTEVENQKNKRIKRLRTDRGGEYESNPFSEFC 359          
BLAST of mRNA_H-paniculata_contig46103.11525.1 vs. uniprot
Match: A0A2I0V7V6_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0V7V6_9ASPA)

HSP 1 Score: 71.2 bits (173), Expect = 4.300e-14
Identity = 32/69 (46.38%), Postives = 47/69 (68.12%), Query Frame = 0
Query:    1 SFGGSRFAIIFVDDYSRMRKVYTLRQKSEALCALKQFERDVARANGLRIRRIRSDQGGEYTGKPFRQFC 69
            SFG  R+ + F+DDYSR   VY L++KSEA    K+F+    + +G  I+ IRSD+GGE+T K F+++C
Sbjct:   60 SFGKHRYFLTFIDDYSRKIWVYFLKEKSEAFTMFKKFKASTEKESGFLIKSIRSDRGGEFTSKAFKEYC 128          
BLAST of mRNA_H-paniculata_contig46103.11525.1 vs. uniprot
Match: A0A6G0JTE1_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0JTE1_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.090e-13
Identity = 31/66 (46.97%), Postives = 48/66 (72.73%), Query Frame = 0
Query:    3 GGSRFAIIFVDDYSRMRKVYTLRQKSEALCALKQFERDVARANGLRIRRIRSDQGGEYTGKPFRQF 68
            GG  +A+ F+DD+SR   VY +++K+E L   K+FE D+  A G +I+R+RSD GGEYTG+ F+++
Sbjct:   61 GGCTYAVTFIDDFSRHVTVYFMKKKAEVLEKFKKFEADMENATGRKIKRLRSDNGGEYTGRLFKEY 126          
BLAST of mRNA_H-paniculata_contig46103.11525.1 vs. uniprot
Match: A0A6A4ASW4_9STRA (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4ASW4_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.180e-13
Identity = 32/66 (48.48%), Postives = 47/66 (71.21%), Query Frame = 0
Query:    3 GGSRFAIIFVDDYSRMRKVYTLRQKSEALCALKQFERDVARANGLRIRRIRSDQGGEYTGKPFRQF 68
            GG  +A+ F+DD+SR   VY +++KSE L   K F+ D+  A G +I+RIRSD GGEYTG+ F+++
Sbjct:  132 GGCTYAVTFIDDFSRHVTVYFMKKKSEVLEKFKMFKADMENATGRKIKRIRSDNGGEYTGRIFKEY 197          
BLAST of mRNA_H-paniculata_contig46103.11525.1 vs. uniprot
Match: A0A4Y1RH81_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RH81_PRUDU)

HSP 1 Score: 73.6 bits (179), Expect = 1.210e-13
Identity = 33/66 (50.00%), Postives = 47/66 (71.21%), Query Frame = 0
Query:    4 GSRFAIIFVDDYSRMRKVYTLRQKSEALCALKQFERDVARANGLRIRRIRSDQGGEYTGKPFRQFC 69
            G+RF + F+DD +RM  VY LR KSEALC  K+F+  V   +G +++++RSD+GGEYT   F +FC
Sbjct:  416 GNRFFLTFIDDCTRMCWVYFLRHKSEALCVFKKFKATVELQSGYKLKKLRSDRGGEYTSVEFERFC 481          
BLAST of mRNA_H-paniculata_contig46103.11525.1 vs. uniprot
Match: A0A6A4DH85_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4DH85_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.240e-13
Identity = 31/66 (46.97%), Postives = 46/66 (69.70%), Query Frame = 0
Query:    3 GGSRFAIIFVDDYSRMRKVYTLRQKSEALCALKQFERDVARANGLRIRRIRSDQGGEYTGKPFRQF 68
            GG  +A+ F+DD+SR   VY L+ K+E +   K F+ D+  A G +I+RIRSD GGEYTG+ F+++
Sbjct:   10 GGRTYAVTFIDDFSRHVTVYFLKMKAEVMEKFKMFKADMENATGRKIKRIRSDNGGEYTGRLFKEY 75          
BLAST of mRNA_H-paniculata_contig46103.11525.1 vs. uniprot
Match: A0A6A3LQ24_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3LQ24_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.310e-13
Identity = 30/66 (45.45%), Postives = 47/66 (71.21%), Query Frame = 0
Query:    3 GGSRFAIIFVDDYSRMRKVYTLRQKSEALCALKQFERDVARANGLRIRRIRSDQGGEYTGKPFRQF 68
            GG  +A+ F+DD+SR   VY +++K+E L   K F+ D+  A G +I+R+RSD GGEYTG+ F+++
Sbjct:   37 GGCTYAVTFIDDFSRHVTVYFMKKKAEVLEKFKMFKADMENATGRKIKRLRSDNGGEYTGRLFKEY 102          
BLAST of mRNA_H-paniculata_contig46103.11525.1 vs. uniprot
Match: A0A6A3G5S7_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3G5S7_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 3.320e-13
Identity = 32/65 (49.23%), Postives = 46/65 (70.77%), Query Frame = 0
Query:    3 GGSRFAIIFVDDYSRMRKVYTLRQKSEALCALKQFERDVARANGLRIRRIRSDQGGEYTGKPFRQ 67
            GG  +A+ F+DD+SR   VY +++KSE L   K F+ D+  A G +IRR+RSD GGEYTG+ F++
Sbjct:  112 GGCTYAVTFIDDFSRHVTVYFMKKKSEVLEKFKMFKADMENATGRKIRRLRSDNGGEYTGRLFKE 176          
BLAST of mRNA_H-paniculata_contig46103.11525.1 vs. uniprot
Match: UPI00159ED418 (DDE-type integrase/transposase/recombinase n=1 Tax=Enterobacter cloacae complex sp. GF14B TaxID=2511982 RepID=UPI00159ED418)

HSP 1 Score: 67.8 bits (164), Expect = 3.530e-13
Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 0
Query:    6 RFAIIFVDDYSRMRKVYTLRQKSEALCALKQFERDVARANGLRIRRIRSDQGGEYTGKPFRQFC 69
            R+ IIF+DD+SR   V+ LRQKSEAL   KQF +      G R++++RSD GGEY  + F  +C
Sbjct:   22 RYFIIFIDDFSRYTTVFLLRQKSEALSVFKQFHKAAELQIGRRLKKLRSDNGGEYVSREFVSYC 85          
BLAST of mRNA_H-paniculata_contig46103.11525.1 vs. uniprot
Match: A0A6A3G1E7_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3G1E7_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.620e-13
Identity = 30/66 (45.45%), Postives = 46/66 (69.70%), Query Frame = 0
Query:    3 GGSRFAIIFVDDYSRMRKVYTLRQKSEALCALKQFERDVARANGLRIRRIRSDQGGEYTGKPFRQF 68
            GG  +A+ F+DD+SR   VY +++K+E L   K F+ D+  A G +I+R+RSD GGEYTG+ F++ 
Sbjct:   61 GGCTYAVTFIDDFSRHVTVYFMKKKAEVLEKFKMFKADMENATGRKIKRLRSDNGGEYTGRLFKEM 126          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46103.11525.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2N9GEZ3_FAGSY9.800e-1552.24Integrase catalytic domain-containing protein n=1 ... [more]
A0A2I0V7V6_9ASPA4.300e-1446.38Retrovirus-related Pol polyprotein from transposon... [more]
A0A6G0JTE1_9STRA1.090e-1346.97Integrase catalytic domain-containing protein n=3 ... [more]
A0A6A4ASW4_9STRA1.180e-1348.48Integrase catalytic domain-containing protein (Fra... [more]
A0A4Y1RH81_PRUDU1.210e-1350.00Transposable element protein n=1 Tax=Prunus dulcis... [more]
A0A6A4DH85_9STRA1.240e-1346.97Integrase catalytic domain-containing protein n=3 ... [more]
A0A6A3LQ24_9STRA1.310e-1345.45Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A3G5S7_9STRA3.320e-1349.23Integrase catalytic domain-containing protein n=3 ... [more]
UPI00159ED4183.530e-1348.44DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A6A3G1E7_9STRA3.620e-1345.45Integrase catalytic domain-containing protein n=1 ... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 6..69
e-value: 3.2E-10
score: 40.2
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 1..69
score: 9.836
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..69
e-value: 9.7E-9
score: 36.9
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 2..69

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46103contigH-paniculata_contig46103:15..221 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46103.11525.1mRNA_H-paniculata_contig46103.11525.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig46103 15..221 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig46103.11525.1 ID=prot_H-paniculata_contig46103.11525.1|Name=mRNA_H-paniculata_contig46103.11525.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp
SFGGSRFAIIFVDDYSRMRKVYTLRQKSEALCALKQFERDVARANGLRIR
RIRSDQGGEYTGKPFRQFC
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR036397RNaseH_sf
IPR012337RNaseH-like_sf