mRNA_H-paniculata_contig4578.11471.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4578.11471.1
Unique NamemRNA_H-paniculata_contig4578.11471.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4578.11471.1 vs. uniprot
Match: D8LKS0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS0_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 4.230e-33
Identity = 61/98 (62.24%), Postives = 77/98 (78.57%), Query Frame = 1 
Query:   10 ELCKEFRLEEICSLEKVFVLGAHGTKCYVLLRGLARVLIRHEDAITGDISLLTQANLGPGDVVGENVLEGVPFRSNTIIAVTDCQFAVIDASDYAKVR 303
            E+CK  RLEE+ SL+KV+V GAHGTKCYVLLRGLARVL   ED  TG +  +  A+LGPGD+ G++VL GVP R N+++AVTDC+FAV+D SDY  V+
Sbjct:  519 EVCKHMRLEEVRSLDKVYVHGAHGTKCYVLLRGLARVLQPEEDPNTGVVRYVPDADLGPGDLFGDDVLRGVPKRPNSVVAVTDCEFAVLDESDYTTVK 616
[Close]
BLAST of mRNA_H-paniculata_contig4578.11471.1 vs. uniprot
Match: A0A835Z9P8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9P8_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 3.870e-17
Identity = 40/101 (39.60%), Postives = 65/101 (64.36%), Query Frame = 1 
Query:    1 QFMELCKEFRLEEICSLEKVFVLGAHGTKCYVLLRGLARVLIRHEDAITGDISLLTQANLGPGDVVGENVLEGVPFRSNTIIAVTDCQFAVIDASDYAKVR 303
            Q+++LC+  +LE++ S+E +F   + G+K Y++L GL R+L R  D  TG   L+  ++L PGDV+G+ VL+GV  R +T +AV+      +D  DY +VR
Sbjct:  874 QWLDLCRHMQLEQVESMETIFAAESQGSKAYLVLTGLVRLLERVVDDSTGTARLVYHSDLCPGDVLGDGVLDGVRTRHHTAVAVSRATLLSVDVEDYLRVR 974
[Close]
BLAST of mRNA_H-paniculata_contig4578.11471.1 vs. uniprot
Match: A0A1R2C6E6_9CILI (Uncharacterized protein n=2 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2C6E6_9CILI)

HSP 1 Score: 55.8 bits (133), Expect = 6.790e-7
Identity = 35/98 (35.71%), Postives = 51/98 (52.04%), Query Frame = 1 
Query:   10 ELCKEFRLEEICSLEKVFVLGAHGTKCYVLLRGLARVLIRHEDAITGDI-SLLTQANLGPGDVVGENVLEGVPFRSNTIIAVTDCQFAVIDASDYAKV 300
            + CK    E + + E VF  G  G K Y++L G+A+V++     I  DI +++T A L  G   GE  L     RS +I+   DC FAV+   DY K+
Sbjct:   73 DCCKAMMYEFVPNGEYVFKCGEKGNKFYIILEGIAKVIV---PIIKDDIVNMITVAQLYSGMAFGELALIKDQPRSASILCAKDCHFAVLVKEDYLKI 167
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4578.11471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LKS0_ECTSI4.230e-3362.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z9P8_9STRA3.870e-1739.60Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1R2C6E6_9CILI6.790e-735.71Uncharacterized protein n=2 Tax=Stentor coeruleus ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4578contigH-paniculata_contig4578:7053..8229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.4
Seed ortholog evalue9.2e-28
Seed eggNOG ortholog2880.D8LKS0
Preferred nameCNBD2
KEGG koko:K04739
KEGG Pathwayko04910,map04910
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000166,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0007276,GO:0007283,GO:0008150,GO:0017076,GO:0019953,GO:0022414,GO:0030551,GO:0030552,GO:0030554,GO:0032501,GO:0032504,GO:0032553,GO:0032555,GO:0032559,GO:0036094,GO:0043167,GO:0043168,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0048232,GO:0048609,GO:0051704,GO:0097159,GO:0097367,GO:1901265,GO:1901363
EggNOG free text desc.cAMP-dependent protein kinase regulator activity
EggNOG OGsCOG0664@1,KOG1113@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons3
Model size304
Cds size297
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4578.11471.1prot_H-paniculata_contig4578.11471.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4578 7059..8229 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930370.4695623-UTR-H-paniculata_contig4578:7052..70581622930370.4695623-UTR-H-paniculata_contig4578:7052..7058Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4578 7053..7058 +
1691481261.5154283-UTR-H-paniculata_contig4578:7052..70581691481261.5154283-UTR-H-paniculata_contig4578:7052..7058Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4578 7053..7058 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930370.4888556-CDS-H-paniculata_contig4578:7058..71091622930370.4888556-CDS-H-paniculata_contig4578:7058..7109Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4578 7059..7109 +
1691481261.5319762-CDS-H-paniculata_contig4578:7058..71091691481261.5319762-CDS-H-paniculata_contig4578:7058..7109Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4578 7059..7109 +
1622930370.5225213-CDS-H-paniculata_contig4578:7424..75591622930370.5225213-CDS-H-paniculata_contig4578:7424..7559Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4578 7425..7559 +
1691481261.5482614-CDS-H-paniculata_contig4578:7424..75591691481261.5482614-CDS-H-paniculata_contig4578:7424..7559Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4578 7425..7559 +
1622930370.545847-CDS-H-paniculata_contig4578:8118..82291622930370.545847-CDS-H-paniculata_contig4578:8118..8229Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4578 8119..8229 +
1691481261.5583642-CDS-H-paniculata_contig4578:8118..82291691481261.5583642-CDS-H-paniculata_contig4578:8118..8229Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4578 8119..8229 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4578.11471.1

>prot_H-paniculata_contig4578.11471.1 ID=prot_H-paniculata_contig4578.11471.1|Name=mRNA_H-paniculata_contig4578.11471.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=99bp
MELCKEFRLEEICSLEKVFVLGAHGTKCYVLLRGLARVLIRHEDAITGDI
SLLTQANLGPGDVVGENVLEGVPFRSNTIIAVTDCQFAVIDASDYAKVR
back to top

mRNA from alignment at H-paniculata_contig4578:7053..8229+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4578.11471.1 ID=mRNA_H-paniculata_contig4578.11471.1|Name=mRNA_H-paniculata_contig4578.11471.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1177bp|location=Sequence derived from alignment at H-paniculata_contig4578:7053..8229+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAATTTATGGAGCTGTGCAAAGAGTTTCGTCTAGAGGAGATTTGCAGTCT
TGAGAAGGTGCAAGTCGAATGGACACCGGCCCAAACTCGGTACGGGCAAC
CGGTTGCACTGTTAGGTTCGTGCGAGAATAGTTCGAAGTAGTCAGTCTCG
TTATCTCAGCGGACACCTGAGGTAGGGGGGGAAACCCCAAGGGATACGTT
GCTCCGAACGGTGTGTCGTTGCAAAACAAGAGTTCGAAAATATTGAAAAC
GTTCAATACCTCGTATGCATCGCCCGCCTGTCCACTGTTGAGGATGTGCT
TGGTTGGACGCTGGCCGCACTCTATGCGCACCTTCAATGCTCTCTCTCCC
ATAACCGTCTCTCGACGAGCAGGTGTTTGTGCTAGGGGCTCATGGGACCA
AGTGCTATGTTCTGTTGCGCGGCCTGGCGAGAGTGCTCATCCGCCATGAG
GACGCAATAACTGGAGATATCTCTCTCCTCACGCAGGCTAACTTGGGGCC
AGGCGATGTGAGGCATCATTGTTATTTCCGAGGAACGTTCGTAGAGGGGG
ATGGGGGGGGCAGTTACAAAGGGCCGCCGAGGACTAGGAACAACGTACTA
TATTCAATAATGTGATCTGGTAATGGGAAGCTTGTTGTTGGGTTGCCATG
GCATGGGGATGGCATGTTGGTCGAGGAACGCGGAGTTCGTGTGACGCGTT
CGTTCTGTTATCATACGGGACGATGTCCAGTTAAACGATACGCTTTTTTG
CGGTGCTCGGACCGGAACACACCCAGCTAGAACGTGCCCAATACTTTTGT
TTCTTCATGATCTATCGATCAATCGAAAGGTGACACACGTTCACGAGAAA
TATGCGTAGCCTGAGTACAACTGCGCCGGTCAAGAATACTGCTTCTCTCA
TCTATCGACGACCAGGAAATAACCTCCCAAATCCCCAGGGCGGATGGTCA
TTTGTTTTGAGTTGTTTTCGAGGCGTACACCCGAGAAATCGCGGCCTTAT
CTATATTATAATCTCACTCGCACACCTGTTTGACTCGAATGTTTTATGAA
CCAACTTCACTCTCAGGTGGTGGGCGAAAACGTGCTCGAGGGAGTTCCCT
TTCGAAGCAATACCATCATCGCCGTTACGGATTGTCAGTTTGCCGTGATC
GACGCTTCGGACTATGCCAAAGTTCGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4578:7053..8229+

>mRNA_H-paniculata_contig4578.11471.1 ID=mRNA_H-paniculata_contig4578.11471.1|Name=mRNA_H-paniculata_contig4578.11471.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at H-paniculata_contig4578:7053..8229+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGCTGTGCAAAGAGTTTCGTCTAGAGGAGATTTGCAGTCTTGAGAA
GATGGAGCTGTGCAAAGAGTTTCGTCTAGAGGAGATTTGCAGTCTTGAGA
AGGTGTTTGTGCTAGGGGCTCATGGGACCAAGTGCTATGTTCTGTTGCGC
GGCCTGGCGAGAGTGCTCATCCGCCATGAGGACGCAATAACTGGAGATAT
CTCTCTCCTCACGCAGGCTAACTTGGGGCCAGGCGATGTGTTTGTGCTAG
GGGCTCATGGGACCAAGTGCTATGTTCTGTTGCGCGGCCTGGCGAGAGTG
CTCATCCGCCATGAGGACGCAATAACTGGAGATATCTCTCTCCTCACGCA
GGCTAACTTGGGGCCAGGCGATGTGGTGGGCGAAAACGTGCTCGAGGGAG
TTCCCTTTCGAAGCAATACCATCATCGCCGTTACGGATTGTCAGTTTGCC
GTGATCGACGCTTCGGACTATGCCAAAGTTCGCGTGGTGGGCGAAAACGT
GCTCGAGGGAGTTCCCTTTCGAAGCAATACCATCATCGCCGTTACGGATT
GTCAGTTTGCCGTGATCGACGCTTCGGACTATGCCAAAGTTCGC
back to top