mRNA_H-paniculata_contig45706.11455.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig45706.11455.1
Unique NamemRNA_H-paniculata_contig45706.11455.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig45706.11455.1 vs. uniprot
Match: D8LES8_ECTSI (Similar to sirtuin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LES8_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 2.550e-13
Identity = 33/43 (76.74%), Postives = 39/43 (90.70%), Query Frame = 1
Query:    1 VMRQEVPQCPVCRRGVMKPDITFFGEKLPNAVKRAVEADHKKA 129
            VM+Q VP+CP C+ GV+KPDITFFGE+LP +VKRAVEADHKKA
Sbjct:  185 VMQQRVPRCPSCQ-GVVKPDITFFGERLPASVKRAVEADHKKA 226          
BLAST of mRNA_H-paniculata_contig45706.11455.1 vs. uniprot
Match: A0A7S1GBY8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GBY8_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 2.570e-7
Identity = 24/39 (61.54%), Postives = 28/39 (71.79%), Query Frame = 1
Query:    1 VMRQEVPQCPVCRRGVMKPDITFFGEKLPNAVKRAVEAD 117
            VM  EVP+CP+CR GV+KPDI FFGE LP    + VE D
Sbjct:  222 VMAGEVPRCPICRVGVVKPDIVFFGEALPLKFGQLVEGD 260          
BLAST of mRNA_H-paniculata_contig45706.11455.1 vs. uniprot
Match: A0A177WFL8_BATDL (Deacetylase sirtuin-type domain-containing protein n=3 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=A0A177WFL8_BATDL)

HSP 1 Score: 52.8 bits (125), Expect = 9.980e-7
Identity = 24/46 (52.17%), Postives = 28/46 (60.87%), Query Frame = 1
Query:    1 VMRQEVPQCPVCRR---GVMKPDITFFGEKLPNAVKRAVEADHKKA 129
            +  Q VP CP C     G+MKPDI FFGEKLP+   R  + D KKA
Sbjct:  312 IFAQTVPTCPKCHEENDGIMKPDIVFFGEKLPDEFNRIFQEDRKKA 357          
BLAST of mRNA_H-paniculata_contig45706.11455.1 vs. uniprot
Match: A0A168NCZ8_ABSGL (NAD-dependent protein deacetylase n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A168NCZ8_ABSGL)

HSP 1 Score: 52.4 bits (124), Expect = 1.350e-6
Identity = 20/40 (50.00%), Postives = 31/40 (77.50%), Query Frame = 1
Query:    1 VMRQEVPQCPVCRRGVMKPDITFFGEKLPNAV-KRAVEAD 117
            +++ ++P+CP C++G++KPDITFFGE LP    KR V+ D
Sbjct:  169 ILQSQIPRCPACKKGLIKPDITFFGESLPKRFFKRLVDFD 208          
BLAST of mRNA_H-paniculata_contig45706.11455.1 vs. uniprot
Match: UPI000C719A86 (NAD-dependent protein deacetylase sirtuin-2 n=1 Tax=Trichogramma pretiosum TaxID=7493 RepID=UPI000C719A86)

HSP 1 Score: 51.6 bits (122), Expect = 2.540e-6
Identity = 23/43 (53.49%), Postives = 28/43 (65.12%), Query Frame = 1
Query:    1 VMRQEVPQCPVCRRGVMKPDITFFGEKLPNAVKRAVEADHKKA 129
            + +  VP+C  C  GV+KPDI FFGE LP+   R VE D KKA
Sbjct:  211 IKKTTVPKCENCSGGVVKPDIVFFGENLPDRFHRMVENDFKKA 253          
BLAST of mRNA_H-paniculata_contig45706.11455.1 vs. uniprot
Match: A0A0L0H9S1_SPIPD (Deacetylase sirtuin-type domain-containing protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0H9S1_SPIPD)

HSP 1 Score: 51.2 bits (121), Expect = 3.490e-6
Identity = 23/45 (51.11%), Postives = 30/45 (66.67%), Query Frame = 1
Query:    1 VMRQEVPQCPVC---RRGVMKPDITFFGEKLPNAVKRAVEADHKK 126
            + +++VP CPVC   R G+MKPDITFFGE LP+   R    D +K
Sbjct:  318 IFQKKVPMCPVCGEERDGIMKPDITFFGEMLPDEFDRLFAEDKEK 362          
BLAST of mRNA_H-paniculata_contig45706.11455.1 vs. uniprot
Match: J9K5K3_ACYPI (Deacetylase sirtuin-type domain-containing protein n=16 Tax=Aphididae TaxID=27482 RepID=J9K5K3_ACYPI)

HSP 1 Score: 51.2 bits (121), Expect = 3.500e-6
Identity = 21/41 (51.22%), Postives = 29/41 (70.73%), Query Frame = 1
Query:    1 VMRQEVPQCPVC--RRGVMKPDITFFGEKLPNAVKRAVEAD 117
            V  Q +P+CP+C    G+MKPDI FFGE LP++  +A+E D
Sbjct:  402 VFEQRIPRCPICVNSTGIMKPDIVFFGEGLPDSFHKAIEDD 442          
BLAST of mRNA_H-paniculata_contig45706.11455.1 vs. uniprot
Match: A0A1B6J1S6_9HEMI (Deacetylase sirtuin-type domain-containing protein n=5 Tax=Proconiini TaxID=565685 RepID=A0A1B6J1S6_9HEMI)

HSP 1 Score: 50.8 bits (120), Expect = 4.780e-6
Identity = 24/45 (53.33%), Postives = 29/45 (64.44%), Query Frame = 1
Query:    1 VMRQEVPQCPVC------RRGVMKPDITFFGEKLPNAVKRAVEAD 117
            V +Q++PQCPVC       RGVMKPDI FFGE LP +   A+  D
Sbjct:  323 VFQQKIPQCPVCPANSEMSRGVMKPDIVFFGEGLPESFHTAMAKD 367          
BLAST of mRNA_H-paniculata_contig45706.11455.1 vs. uniprot
Match: W4FQG3_9STRA (Deacetylase sirtuin-type domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FQG3_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 6.530e-6
Identity = 19/41 (46.34%), Postives = 28/41 (68.29%), Query Frame = 1
Query:    7 RQEVPQCPVCRRGVMKPDITFFGEKLPNAVKRAVEADHKKA 129
            +  +P+CP C  G++KPDITFFGE L +A + A+  D  +A
Sbjct:  259 KDHIPKCPQCNDGILKPDITFFGEALHDATRHALPVDRTQA 299          
BLAST of mRNA_H-paniculata_contig45706.11455.1 vs. uniprot
Match: A0A2H8U0Z3_9HEMI (NAD-dependent deacetylase sirtuin-1 (Fragment) n=2 Tax=Aphidini TaxID=33387 RepID=A0A2H8U0Z3_9HEMI)

HSP 1 Score: 50.1 bits (118), Expect = 8.940e-6
Identity = 20/41 (48.78%), Postives = 29/41 (70.73%), Query Frame = 1
Query:    1 VMRQEVPQCPVC--RRGVMKPDITFFGEKLPNAVKRAVEAD 117
            V  Q +P+CP+C    G+MKPDI FFGE LP++  +A++ D
Sbjct:  281 VFEQRIPRCPICVNSAGIMKPDIVFFGEGLPDSFHKAIDDD 321          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45706.11455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LES8_ECTSI2.550e-1376.74Similar to sirtuin n=1 Tax=Ectocarpus siliculosus ... [more]
A0A7S1GBY8_9STRA2.570e-761.54Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A177WFL8_BATDL9.980e-752.17Deacetylase sirtuin-type domain-containing protein... [more]
A0A168NCZ8_ABSGL1.350e-650.00NAD-dependent protein deacetylase n=1 Tax=Absidia ... [more]
UPI000C719A862.540e-653.49NAD-dependent protein deacetylase sirtuin-2 n=1 Ta... [more]
A0A0L0H9S1_SPIPD3.490e-651.11Deacetylase sirtuin-type domain-containing protein... [more]
J9K5K3_ACYPI3.500e-651.22Deacetylase sirtuin-type domain-containing protein... [more]
A0A1B6J1S6_9HEMI4.780e-653.33Deacetylase sirtuin-type domain-containing protein... [more]
W4FQG3_9STRA6.530e-646.34Deacetylase sirtuin-type domain-containing protein... [more]
A0A2H8U0Z3_9HEMI8.940e-648.78NAD-dependent deacetylase sirtuin-1 (Fragment) n=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig45706contigH-paniculata_contig45706:553..693 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.5
Seed ortholog evalue2.4e-10
Seed eggNOG ortholog2880.D8LES8
KEGG rclassRC00033,RC00096,RC00485
KEGG koko:K11121,ko:K11411
KEGG ReactionR00102,R10633
KEGG Pathwayko00760,ko01100,ko04068,ko04152,ko04211,ko04212,ko04213,ko04218,ko04922,ko05031,ko05206,map00760,map01100,map04068,map04152,map04211,map04212,map04213,map04218,map04922,map05031,map05206
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.NAD binding
EggNOG OGsCOG0846@1,KOG2684@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03029,ko03032,ko03036
Exons1
Model size141
Cds size138
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930368.2538357-CDS-H-paniculata_contig45706:552..6901622930368.2538357-CDS-H-paniculata_contig45706:552..690Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45706 553..690 -
1691481260.627519-CDS-H-paniculata_contig45706:552..6901691481260.627519-CDS-H-paniculata_contig45706:552..690Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45706 553..690 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930368.2687366-UTR-H-paniculata_contig45706:690..6931622930368.2687366-UTR-H-paniculata_contig45706:690..693Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig45706 691..693 -
1691481260.6404123-UTR-H-paniculata_contig45706:690..6931691481260.6404123-UTR-H-paniculata_contig45706:690..693Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig45706 691..693 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig45706.11455.1prot_H-paniculata_contig45706.11455.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig45706 553..690 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig45706.11455.1

>prot_H-paniculata_contig45706.11455.1 ID=prot_H-paniculata_contig45706.11455.1|Name=mRNA_H-paniculata_contig45706.11455.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=46bp
MRQEVPQCPVCRRGVMKPDITFFGEKLPNAVKRAVEADHKKAIYE*
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mRNA from alignment at H-paniculata_contig45706:553..693-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig45706.11455.1 ID=mRNA_H-paniculata_contig45706.11455.1|Name=mRNA_H-paniculata_contig45706.11455.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=141bp|location=Sequence derived from alignment at H-paniculata_contig45706:553..693- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCATGCGGCAAGAGGTGCCACAGTGTCCAGTCTGCCGGAGGGGGGTGAT GAAGCCGGACATCACTTTTTTCGGAGAGAAGCTTCCGAACGCGGTGAAGC GGGCGGTGGAAGCGGATCACAAGAAGGCAATATATGAATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig45706:553..693-

>mRNA_H-paniculata_contig45706.11455.1 ID=mRNA_H-paniculata_contig45706.11455.1|Name=mRNA_H-paniculata_contig45706.11455.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=276bp|location=Sequence derived from alignment at H-paniculata_contig45706:553..693- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGCAAGAGGTGCCACAGTGTCCAGTCTGCCGGAGGGGGGTGATGAA
GCCGGACATCACTTTTTTCGGAGAGAAGCTTCCGAACGCGGTGAAGCGGG
CGGTGGAAGCGGATCACAAGAAGGCAATATATGAATAAATGCGGCAAGAG
GTGCCACAGTGTCCAGTCTGCCGGAGGGGGGTGATGAAGCCGGACATCAC
TTTTTTCGGAGAGAAGCTTCCGAACGCGGTGAAGCGGGCGGTGGAAGCGG
ATCACAAGAAGGCAATATATGAATAA
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