mRNA_H-paniculata_contig45674.11449.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig45674.11449.1
Unique NamemRNA_H-paniculata_contig45674.11449.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig45674.11449.1 vs. uniprot
Match: D7FIR4_ECTSI (Nucleolar GTP-binding protein 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIR4_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 1.450e-21
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:    1 QRKTPTVIHPGYKISRIRSFYMRKVKFTQETISERLGAIIADFPRLD 141
            QRKTPTVIHPGYKISRIRSFYMRKVKFTQETISERLGAII DFPRLD
Sbjct:   27 QRKTPTVIHPGYKISRIRSFYMRKVKFTQETISERLGAIIGDFPRLD 73
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BLAST of mRNA_H-paniculata_contig45674.11449.1 vs. uniprot
Match: A0A7S4E7K3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E7K3_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.290e-20
Identity = 42/47 (89.36%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 QRKTPTVIHPGYKISRIRSFYMRKVKFTQETISERLGAIIADFPRLD 141
            QRKTPTV+HPGYKI+RIRSFYMRKVKFTQ+TISERLGAI++DFPRLD
Sbjct:   27 QRKTPTVVHPGYKITRIRSFYMRKVKFTQQTISERLGAIVSDFPRLD 73
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BLAST of mRNA_H-paniculata_contig45674.11449.1 vs. uniprot
Match: F0Y285_AURAN (Nucleolar GTP-binding protein 1 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y285_AURAN)

HSP 1 Score: 91.7 bits (226), Expect = 2.400e-20
Identity = 42/47 (89.36%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:    1 QRKTPTVIHPGYKISRIRSFYMRKVKFTQETISERLGAIIADFPRLD 141
            QRKTPTV+HPGYKI+RIRSFYMRKVKFTQ+TISERLGAI+ DFPRLD
Sbjct:   27 QRKTPTVVHPGYKITRIRSFYMRKVKFTQQTISERLGAIVQDFPRLD 73
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BLAST of mRNA_H-paniculata_contig45674.11449.1 vs. uniprot
Match: A0A7S3JRU4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JRU4_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 4.480e-20
Identity = 42/47 (89.36%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:    1 QRKTPTVIHPGYKISRIRSFYMRKVKFTQETISERLGAIIADFPRLD 141
            QRKTPTVIHPGYKISRIRSFYMRK+KFT +TISERLGAI+ DFPRLD
Sbjct:   27 QRKTPTVIHPGYKISRIRSFYMRKIKFTTQTISERLGAIVGDFPRLD 73
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BLAST of mRNA_H-paniculata_contig45674.11449.1 vs. uniprot
Match: K0SBV3_THAOC (OBG-type G domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SBV3_THAOC)

HSP 1 Score: 85.1 bits (209), Expect = 5.330e-19
Identity = 38/46 (82.61%), Postives = 45/46 (97.83%), Query Frame = 1 
Query:    1 QRKTPTVIHPGYKISRIRSFYMRKVKFTQETISERLGAIIADFPRL 138
            QR+TPTV+HPGYKISRIRSFYMRK+KFTQ+TISERL A+++DFPRL
Sbjct:   27 QRRTPTVVHPGYKISRIRSFYMRKIKFTQQTISERLTAMLSDFPRL 72
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BLAST of mRNA_H-paniculata_contig45674.11449.1 vs. uniprot
Match: A0A7S0K9R0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0K9R0_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 5.630e-19
Identity = 37/47 (78.72%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:    1 QRKTPTVIHPGYKISRIRSFYMRKVKFTQETISERLGAIIADFPRLD 141
            QR+TPTV+HPGYKI+RIR+FYMRKVKFTQ+TISE+LGAI+  FPRL+
Sbjct:   27 QRRTPTVVHPGYKITRIRNFYMRKVKFTQQTISEKLGAILQTFPRLN 73
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BLAST of mRNA_H-paniculata_contig45674.11449.1 vs. uniprot
Match: A0A836CDN0_9STRA (Nucleolar GTP-binding protein 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDN0_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.010e-18
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:    1 QRKTPTVIHPGYKISRIRSFYMRKVKFTQETISERLGAIIADFPRLD 141
            QRKTPTV+HPGY I+RIR FYMRKVKFTQET+SERLG II DFPRLD
Sbjct:   27 QRKTPTVVHPGYNINRIRQFYMRKVKFTQETLSERLGQIIMDFPRLD 73
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BLAST of mRNA_H-paniculata_contig45674.11449.1 vs. uniprot
Match: A0A7R9ZAJ1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZAJ1_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.670e-18
Identity = 36/46 (78.26%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:    1 QRKTPTVIHPGYKISRIRSFYMRKVKFTQETISERLGAIIADFPRL 138
            QR+TPTV+HPGYKI+RIRSFYMRK+KFTQ+TIS+RL  I+ DFPRL
Sbjct:   27 QRRTPTVVHPGYKITRIRSFYMRKIKFTQQTISDRLSQILEDFPRL 72
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BLAST of mRNA_H-paniculata_contig45674.11449.1 vs. uniprot
Match: A0A7S3MAG3_9STRA (Nucleolar GTP-binding protein 1 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MAG3_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 2.570e-18
Identity = 39/47 (82.98%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:    1 QRKTPTVIHPGYKISRIRSFYMRKVKFTQETISERLGAIIADFPRLD 141
            QRKTPTVIHPGYKI+RIR+FYMRKVKFTQ+TI E+LGA + DFPRLD
Sbjct:   46 QRKTPTVIHPGYKITRIRNFYMRKVKFTQQTIGEKLGATLQDFPRLD 92
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BLAST of mRNA_H-paniculata_contig45674.11449.1 vs. uniprot
Match: A0A482RSB8_9ARCH (NOG1 family protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RSB8_9ARCH)

HSP 1 Score: 85.1 bits (209), Expect = 4.790e-18
Identity = 37/47 (78.72%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:    1 QRKTPTVIHPGYKISRIRSFYMRKVKFTQETISERLGAIIADFPRLD 141
            QRKTPTV+HPGY+I+RIR+FYMRKVKFTQ+TI E+LGA++ DFPRLD
Sbjct:   12 QRKTPTVVHPGYRITRIRAFYMRKVKFTQQTIDEKLGAMLQDFPRLD 58
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45674.11449.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIR4_ECTSI1.450e-2197.87Nucleolar GTP-binding protein 1 n=2 Tax=Ectocarpus... [more]
A0A7S4E7K3_9STRA1.290e-2089.36Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0Y285_AURAN2.400e-2089.36Nucleolar GTP-binding protein 1 n=1 Tax=Aureococcu... [more]
A0A7S3JRU4_9STRA4.480e-2089.36Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
K0SBV3_THAOC5.330e-1982.61OBG-type G domain-containing protein n=1 Tax=Thala... [more]
A0A7S0K9R0_9STRA5.630e-1978.72Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A836CDN0_9STRA1.010e-1885.11Nucleolar GTP-binding protein 1 n=1 Tax=Tribonema ... [more]
A0A7R9ZAJ1_9STRA1.670e-1878.26Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S3MAG3_9STRA2.570e-1882.98Nucleolar GTP-binding protein 1 n=1 Tax=Spumella e... [more]
A0A482RSB8_9ARCH4.790e-1878.72NOG1 family protein n=1 Tax=archaeon TaxID=1906665... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig45674contigH-paniculata_contig45674:55..207 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.3
Seed ortholog evalue4.4e-18
Seed eggNOG ortholog2880.D7FIR4
KEGG koko:K06943,ko:K11269,ko:K19307
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016072,GO:0017076,GO:0019001,GO:0022613,GO:0031974,GO:0031981,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034470,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0042254,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363
EggNOG free text desc.negative regulation of collagen binding
EggNOG OGsCOG1084@1,KOG1490@2759
EC2.1.1.313
COG Functional cat.EGP
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03036
Exons1
Model size153
Cds size153
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930367.0760727-CDS-H-paniculata_contig45674:54..2071622930367.0760727-CDS-H-paniculata_contig45674:54..207Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45674 55..207 +
1691481259.949547-CDS-H-paniculata_contig45674:54..2071691481259.949547-CDS-H-paniculata_contig45674:54..207Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45674 55..207 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig45674.11449.1prot_H-paniculata_contig45674.11449.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig45674 55..207 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig45674.11449.1

>prot_H-paniculata_contig45674.11449.1 ID=prot_H-paniculata_contig45674.11449.1|Name=mRNA_H-paniculata_contig45674.11449.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=51bp
QRKTPTVIHPGYKISRIRSFYMRKVKFTQETISERLGAIIADFPRLDVSG
*
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mRNA from alignment at H-paniculata_contig45674:55..207+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig45674.11449.1 ID=mRNA_H-paniculata_contig45674.11449.1|Name=mRNA_H-paniculata_contig45674.11449.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=153bp|location=Sequence derived from alignment at H-paniculata_contig45674:55..207+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCGCAAAACACCCACGGTGATTCACCCGGGCTACAAGATCAGCCGTAT
CAGGTCGTTCTACATGCGCAAGGTCAAGTTTACGCAGGAGACGATCAGTG
AGAGGCTGGGTGCTATCATCGCGGACTTTCCCCGCCTTGATGTGAGTGGA
TAA
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Coding sequence (CDS) from alignment at H-paniculata_contig45674:55..207+

>mRNA_H-paniculata_contig45674.11449.1 ID=mRNA_H-paniculata_contig45674.11449.1|Name=mRNA_H-paniculata_contig45674.11449.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=306bp|location=Sequence derived from alignment at H-paniculata_contig45674:55..207+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCGCAAAACACCCACGGTGATTCACCCGGGCTACAAGATCAGCCGTAT
CAGGTCGTTCTACATGCGCAAGGTCAAGTTTACGCAGGAGACGATCAGTG
AGAGGCTGGGTGCTATCATCGCGGACTTTCCCCGCCTTGATGTGAGTGGA
TAACAGCGCAAAACACCCACGGTGATTCACCCGGGCTACAAGATCAGCCG
TATCAGGTCGTTCTACATGCGCAAGGTCAAGTTTACGCAGGAGACGATCA
GTGAGAGGCTGGGTGCTATCATCGCGGACTTTCCCCGCCTTGATGTGAGT
GGATAA
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