mRNA_H-paniculata_contig45385.11400.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig45385.11400.1
Unique NamemRNA_H-paniculata_contig45385.11400.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45385.11400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig45385contigH-paniculata_contig45385:171..1039 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size622
Cds size342
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig45385.11400.1prot_H-paniculata_contig45385.11400.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig45385 171..760 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930360.9888916-CDS-H-paniculata_contig45385:170..4251622930360.9888916-CDS-H-paniculata_contig45385:170..425Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45385 171..425 -
1691481257.4120686-CDS-H-paniculata_contig45385:170..4251691481257.4120686-CDS-H-paniculata_contig45385:170..425Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45385 171..425 -
1622930361.004123-CDS-H-paniculata_contig45385:673..7601622930361.004123-CDS-H-paniculata_contig45385:673..760Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45385 674..760 -
1691481257.4225698-CDS-H-paniculata_contig45385:673..7601691481257.4225698-CDS-H-paniculata_contig45385:673..760Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45385 674..760 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930361.0198386-UTR-H-paniculata_contig45385:760..10391622930361.0198386-UTR-H-paniculata_contig45385:760..1039Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig45385 761..1039 -
1691481257.432804-UTR-H-paniculata_contig45385:760..10391691481257.432804-UTR-H-paniculata_contig45385:760..1039Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig45385 761..1039 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig45385.11400.1

>prot_H-paniculata_contig45385.11400.1 ID=prot_H-paniculata_contig45385.11400.1|Name=mRNA_H-paniculata_contig45385.11400.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp
MASRQDGADGSSTRQVAMMAAAVKGLEIKESDIHSVGMFEINDMDAGAFV
DICCFGTFEVHDFDKEVHDALADGVPRYMVTADVASLCVAGEVSRPNAAL
FLLPLPCNVLWYMN
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mRNA from alignment at H-paniculata_contig45385:171..1039-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig45385.11400.1 ID=mRNA_H-paniculata_contig45385.11400.1|Name=mRNA_H-paniculata_contig45385.11400.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=869bp|location=Sequence derived from alignment at H-paniculata_contig45385:171..1039- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACGGATGCGGGTGATGCGGTCCTATCTTCTTCCGCTGATCGAGACAGCG
ACCTCTCGTGGAAGTTGCTTAAGGAGGGCCGGACTCGTGTCACACTCGTG
CCCGAACTTTCGAGGCTCCAACCTGTAACTGATGACTTGGCTGCTGTCTG
CCGCGAGAACACCCGGACAGGGCTGTGGTCGAAGATGCTATCGGCGGACA
AGCCCCAGAAAATGGTGGGAAGTAAATCCTACCCATCAACGTCCCGGAGT
CCAACGTTCCACACACCGTACACGAGGAGATGGCGTCCAGACAGGACGGA
GCGGATGGCTCCTCTACCCGGCAGGTCGCCATGATGGCGGCTGCTGTCAA
GGGCCTCGAGATAAAGGTATGTACCTCGATTAGAGCTGTGCATGGGACAG
CCAGACTTCATGTTGTGCGATTATCGGGGCTTGTTTGCTGTTGTTGAATA
GTGGTATATACCATGTATATATTTGAGCTTATGTGTGAATCTGGTGGAAA
GTCTAAGTTAAGTACTTAGCCGACCTCTTCCGCCACCATGTGATCACACT
AATTACGAATTCGCTTGTGACGCCTTTCCACCCTTCCGTCCGATATATTT
ACCTTTCATTACAGGAGTCTGACATTCATAGTGTTGGGATGTTTGAGATC
AACGACATGGATGCTGGGGCCTTTGTCGACATTTGTTGCTTCGGAACATT
CGAAGTGCACGACTTCGATAAGGAAGTGCATGACGCCCTGGCTGATGGCG
TTCCTCGGTACATGGTGACAGCGGACGTGGCTTCTTTGTGTGTAGCCGGT
GAAGTGTCGCGGCCGAACGCCGCCCTGTTTTTACTCCCGCTACCTTGCAA
CGTTTTGTGGTACATGAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig45385:171..1039-

>mRNA_H-paniculata_contig45385.11400.1 ID=mRNA_H-paniculata_contig45385.11400.1|Name=mRNA_H-paniculata_contig45385.11400.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig45385:171..1039- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGTCCAGACAGGACGGAGCGGATGGCTCCTCTACCCGGCAGGTCGC
CATGATGGCGGCTGCTGTCAAGGGCCTCGAGATAAAGATGGCGTCCAGAC
AGGACGGAGCGGATGGCTCCTCTACCCGGCAGGTCGCCATGATGGCGGCT
GCTGTCAAGGGCCTCGAGATAAAGGAGTCTGACATTCATAGTGTTGGGAT
GTTTGAGATCAACGACATGGATGCTGGGGCCTTTGTCGACATTTGTTGCT
TCGGAACATTCGAAGTGCACGACTTCGATAAGGAAGTGCATGACGCCCTG
GCTGATGGCGTTCCTCGGTACATGGTGACAGCGGACGTGGCTTCTTTGTG
TGTAGCCGGTGAAGTGTCGCGGCCGAACGCCGCCCTGTTTTTACTCCCGC
TACCTTGCAACGTTTTGTGGTACATGAACGAGTCTGACATTCATAGTGTT
GGGATGTTTGAGATCAACGACATGGATGCTGGGGCCTTTGTCGACATTTG
TTGCTTCGGAACATTCGAAGTGCACGACTTCGATAAGGAAGTGCATGACG
CCCTGGCTGATGGCGTTCCTCGGTACATGGTGACAGCGGACGTGGCTTCT
TTGTGTGTAGCCGGTGAAGTGTCGCGGCCGAACGCCGCCCTGTTTTTACT
CCCGCTACCTTGCAACGTTTTGTGGTACATGAAC
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