mRNA_H-paniculata_contig4523.11373.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4523.11373.1 vs. uniprot
Match: D8LMZ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMZ6_ECTSI) HSP 1 Score: 366 bits (940), Expect = 3.830e-107 Identity = 257/579 (44.39%), Postives = 319/579 (55.09%), Query Frame = 1
Query: 976 GIAVDFASQSIPTEYM------TKAPEPGRRGKRTGMGMDDVGRLLAGRRAEQ-SRRVPDLGFVARLGMAADRAISSASPGHLMEMCRVRSPSPTARRLLLALVVALGLRWRRWSDVRMNLLGNKSELKGFLLRFDKDRPGLTSGDLRPFVEDPDLSPAQVKQVAVCMVWLSRWLRSLYDYLLAREGK---ITATPEIFPPASTRRRAKRHSHREAHKKGQPLSPRPRAHRAGVARSRSRDDVDRGGRRGFSPSKNAAEAEKTREAAALASADLAPGGATTRPLSSNALPRQKQQNETAVVPGERHEHQDHEHNRGGAES----SQALATRVAGSSSIPKSLAMVTGGVGGVNRGDGVREAVGAGERRAGSRVLVGDRKGGEGAPTMEASLVGGDSNAESEWTAGTVTSRGDVLEAATDDQVDIGSWVREEGSEGFSARTRGRRV-------ERRGSAVRGSGFSQPTTTLAAGGDRAKGGGERARSHQKVHLKQRGDRSGVISNKGNWSMTSCSDGCLVAHVHKGRTPTHFANPKARRPLVGRHNPILANRRWPPPVEVKPRELTEQRSAFSLEHSFL 2649
G +DF+SQSI TEYM + P PGRRGKR+GMG+D VGRLLAGRRAE+ +R++PD VARLG AADRA+ + S GHL EMCR++SP RRL+L LV+ALGLRWRRWSD+R +LLGNK EL+GFL RF+KDR GL S L PFVEDP LSPA+V++VA CMVW+ RWL +L+DYL +EGK + P PA++R RAK R+ S RAH G D GR G P A E GG+ T+P S T + ++H+ Q H H RGG S+A ATR S+ P G G +RG+G R G G R GG+G V GD +ES+WT GTVTSRGDVL T+DQVDIGS V G +G + + G S P + + GD A+ G ++ L +G R G + + T S C+ H HKGRTP+ ANPKARRP+ H+PILAN RWPPPV+V +E TEQRSA+SLEHSFL
Sbjct: 476 GRTLDFSSQSILTEYMDEYAWPSSLPAPGRRGKRSGMGVDHVGRLLAGRRAEEPARKLPDPAVVARLGAAADRALGAGSLGHLSEMCRLKSPPLACRRLMLGLVIALGLRWRRWSDIRTHLLGNKPELQGFLKRFNKDRAGLASTALLPFVEDPSLSPAEVRRVAACMVWVPRWLHALHDYLAVKEGKELDVDTMPMFQEPATSRSRAKLARRRQ--------SSGCRAH--GTVPGTVPPDGASKGREGRRP--GAGE-----------------GGSGTQPRKSGTAAAAGATAATMGLSEQKHD-QGHHHGRGGTRKTRRPSRAAATR-GDDSTCPPGSTPTGGDTEGGSRGEGFRY-FGEGGR------------GGDGGKVD----VDGDLESESQWTVGTVTSRGDVLRTPTEDQVDIGSSVVVGGGKGNVRKAPHKHAGXXXXXXXXXXXXXXGVPASPPRRRVRSTGDAARRAGTGTLGFEET-LAPKGGRRGSVRRGLSRGDTQASHACIYRHKHKGRTPSRVANPKARRPVQAAHDPILANTRWPPPVDVPAQERTEQRSAYSLEHSFL 1005
BLAST of mRNA_H-paniculata_contig4523.11373.1 vs. uniprot
Match: A0A6H5JPQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPQ9_9PHAE) HSP 1 Score: 91.7 bits (226), Expect = 1.420e-18 Identity = 43/68 (63.24%), Postives = 50/68 (73.53%), Query Frame = 1
Query: 2446 TSCSDGCLVAHVHKGRTPTHFANPKARRPLVGRHNPILANRRWPPPVEVKPRELTEQRSAFSLEHSFL 2649
T S C+ H KGRTP+ ANPKARRP+ H+PILAN RWPPPV+V +E TEQRSA+SLEHS L
Sbjct: 21 TQVSHACIYRHKLKGRTPSRVANPKARRPVQAAHDPILANIRWPPPVDVPAQERTEQRSAYSLEHSSL 88 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4523.11373.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4523.11373.1 >prot_H-paniculata_contig4523.11373.1 ID=prot_H-paniculata_contig4523.11373.1|Name=mRNA_H-paniculata_contig4523.11373.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=749bp MPTGTRTTRNVLRRSGDALCDPSLPEHEPECPRCTATSGAGYEIVREAWRback to top mRNA from alignment at H-paniculata_contig4523:4780..14570- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4523.11373.1 ID=mRNA_H-paniculata_contig4523.11373.1|Name=mRNA_H-paniculata_contig4523.11373.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9791bp|location=Sequence derived from alignment at H-paniculata_contig4523:4780..14570- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4523:4780..14570- >mRNA_H-paniculata_contig4523.11373.1 ID=mRNA_H-paniculata_contig4523.11373.1|Name=mRNA_H-paniculata_contig4523.11373.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4494bp|location=Sequence derived from alignment at H-paniculata_contig4523:4780..14570- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |