mRNA_H-paniculata_contig45193.11361.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig45193.11361.1
Unique NamemRNA_H-paniculata_contig45193.11361.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig45193.11361.1 vs. uniprot
Match: A0A6H5JAY4_9PHAE (C3H1-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAY4_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 4.050e-25
Identity = 58/111 (52.25%), Postives = 81/111 (72.97%), Query Frame = 1 
Query:    1 GRAVVFDQRRACEFNHLRISPVGVVED-KFRDVHDLSFPRTPPDGVSSVNADTDFARAPQVELGHVIKDVLLRIIYLRQKHGPSARIVISKMDVSEAYRQIPIDPAGANLF 330
            GRA+VFD R   E   +R+SP+GV++  KFR +HDL+F    P   +SVN DTDF +AP+  LGHV+ D+L R++YLRQ HG S  I+I ++DV EA+RQIP+DP+ A++F
Sbjct:  701 GRALVFDVRFIREILGVRVSPLGVIDKPKFRIIHDLTFTSGVPIR-TSVNHDTDFDQAPECLLGHVLSDILKRVLYLRQVHGVSLEILICRIDVKEAFRQIPVDPSRASVF 810
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BLAST of mRNA_H-paniculata_contig45193.11361.1 vs. uniprot
Match: A0A835YZC0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZC0_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.720e-21
Identity = 67/147 (45.58%), Postives = 83/147 (56.46%), Query Frame = 1 
Query:    1 GRAVVFDQRRACEF--NHLRISPVGVVED---KFRDVHDLSFPRTPPDGVSSVNADTDFARAPQVELGHVIKDVLLRIIYLRQKHGPSARIVISKMDVSEAYRQIPIDPAGANLFSYEIEVVVVSDLRLQFGWCSSSGYWALAAAAL 426
            GR +V     A  +    L I+PV VV++   KFR VHDLS          SVN  T F  AP V  GH+ + +L RI  LRQ   P  RI+ISKMDV  A+RQ+ +D  G  L  Y    +VV DLRLQFGW SS G+W+LA  A+
Sbjct:   72 GRCIVMHAAIARMYFSTRLHINPVFVVDEGAAKFRVVHDLSALLHG----ESVNNTTVFEEAPVVGCGHIFEAMLYRIWSLRQA-WPRKRILISKMDVKSAFRQLALDVRGP-LLGYRYNDLVVVDLRLQFGWRSSPGWWSLAGGAI 212
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BLAST of mRNA_H-paniculata_contig45193.11361.1 vs. uniprot
Match: A0A836CKZ7_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKZ7_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.900e-18
Identity = 59/120 (49.17%), Postives = 70/120 (58.33%), Query Frame = 1 
Query:   49 LRISPVGVVED---KFRDVHDLSFPRTPPDGVSSVNADTDFARAPQVELGHVIKDVLLRIIYLRQKHGPSARIVISKMDVSEAYRQIPIDPAGANLFSYEIEVVVVSDLRLQFGWCSSSG 399
            L I+PV VV++    FR VHDLS          SVN  T F  AP VE GH+ + +L RI  LRQ   P  RI+ISKMDV  A+RQ+ +D  G  L  Y    +VV DLRLQFGW SS G
Sbjct:    7 LHINPVFVVDEGAANFRVVHDLSALLHG----ESVNNTTVFEEAPVVECGHIFEAMLYRIWSLRQA-WPRKRILISKMDVKSAFRQLALDVRGP-LLGYRYNDLVVVDLRLQFGWRSSPG 120
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BLAST of mRNA_H-paniculata_contig45193.11361.1 vs. uniprot
Match: A0A836CCV7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCV7_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 4.170e-8
Identity = 44/90 (48.89%), Postives = 54/90 (60.00%), Query Frame = 1 
Query:   49 LRISPVGVVED---KFRDVHDLSFPRTPPDGVSSVNADTDFARAPQVELGHVIKDVLLRIIYLRQKHGPSARIVISKMDVSEAYRQIPID 309
            L I+PV VV++   KFR VHDLS       G S  N  T F  AP VE GH+ + +L RI  LRQ   P  RI+ISKMDV  A+RQ+ +D
Sbjct:  407 LHINPVFVVDEGAAKFRVVHDLSALLH---GESVDNNTTVFEDAPVVECGHIFEAMLYRIWSLRQA-WPRKRILISKMDVKSAFRQLALD 492
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BLAST of mRNA_H-paniculata_contig45193.11361.1 vs. uniprot
Match: A0A835YMP6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMP6_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.340e-6
Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:  271 MDVSEAYRQIPIDPAGANLFSYEIEVVVVSDLRLQFGWCSSSGYWALAAAALE 429
            MDV  A+RQ+ +D  G  L  Y    +VV DLRLQFGW SS G+W+LA  A+E
Sbjct:  110 MDVKSAFRQLALDVRGP-LLGYRYNDLVVVDLRLQFGWRSSPGWWSLAGGAIE 161
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BLAST of mRNA_H-paniculata_contig45193.11361.1 vs. uniprot
Match: A0A8B6FR62_MYTGA (Uncharacterized protein n=2 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6FR62_MYTGA)

HSP 1 Score: 52.0 bits (123), Expect = 5.260e-5
Identity = 46/132 (34.85%), Postives = 69/132 (52.27%), Query Frame = 1 
Query:   13 VFDQRRACEFNHLRISPVGVVEDKF----RDVHDLSFPRTPPDGVSSVNADTDFARAPQVELGHVIKDVLLRIIYLRQKHGPSARIVISKMDVSEAYRQIPIDPAGANLFSYEIEVVVVSDLRLQFGWCSSS 396
            V D      F+  R+SPVG+VE K+    R + DLS P    D  SSVN   D        L ++  D  ++II   +++G ++R    K+DVS A++ IPI P+  +L+ ++ E +     RL FG C SS
Sbjct:   76 VIDLFTKATFDIYRVSPVGIVEGKYSKKKRLILDLSAPHNS-DEHSSVN---DLINKEDFSLSYIKIDDAIKII---KEYGFASRCC--KLDVSNAFKLIPIHPSLWHLYGFKWENMYYFYTRLAFG-CRSS 197
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45193.11361.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JAY4_9PHAE4.050e-2552.25C3H1-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A835YZC0_9STRA1.720e-2145.58Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CKZ7_9STRA1.900e-1849.17Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A836CCV7_9STRA4.170e-848.89Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YMP6_9STRA1.340e-652.83Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8B6FR62_MYTGA5.260e-534.85Uncharacterized protein n=2 Tax=Mytilus galloprovi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig45193contigH-paniculata_contig45193:1078..1578 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue4.2e-09
Seed eggNOG ortholog115417.EPrPW00000025354
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein.. Source PGD
EggNOG OGs1MIKK@121069,2EEVD@1,2SK6B@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons1
Model size501
Cds size501
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930355.6288693-CDS-H-paniculata_contig45193:1077..15781622930355.6288693-CDS-H-paniculata_contig45193:1077..1578Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45193 1078..1578 -
1691481255.2241063-CDS-H-paniculata_contig45193:1077..15781691481255.2241063-CDS-H-paniculata_contig45193:1077..1578Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45193 1078..1578 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig45193.11361.1prot_H-paniculata_contig45193.11361.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig45193 1078..1578 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig45193.11361.1

>prot_H-paniculata_contig45193.11361.1 ID=prot_H-paniculata_contig45193.11361.1|Name=mRNA_H-paniculata_contig45193.11361.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=167bp
GRAVVFDQRRACEFNHLRISPVGVVEDKFRDVHDLSFPRTPPDGVSSVNA
DTDFARAPQVELGHVIKDVLLRIIYLRQKHGPSARIVISKMDVSEAYRQI
PIDPAGANLFSYEIEVVVVSDLRLQFGWCSSSGYWALAAAALEHSHNHTT
FRGTRLYDHGKAAAVGV
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mRNA from alignment at H-paniculata_contig45193:1078..1578-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig45193.11361.1 ID=mRNA_H-paniculata_contig45193.11361.1|Name=mRNA_H-paniculata_contig45193.11361.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=501bp|location=Sequence derived from alignment at H-paniculata_contig45193:1078..1578- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCAGAGCCGTAGTGTTTGACCAACGGCGTGCATGCGAATTTAACCACCT
GCGCATCTCCCCTGTAGGAGTGGTCGAGGACAAATTTCGTGATGTACATG
ACCTGTCTTTCCCACGAACCCCCCCGGATGGTGTTTCAAGTGTGAATGCG
GATACTGATTTTGCACGTGCCCCACAAGTTGAACTTGGTCATGTCATCAA
AGACGTCTTGTTGCGTATCATATACTTGCGGCAAAAGCATGGGCCAAGCG
CTCGTATCGTAATCAGTAAGATGGATGTCAGCGAAGCATACAGGCAAATC
CCTATTGATCCCGCTGGTGCTAATTTATTCAGCTATGAGATTGAAGTAGT
TGTAGTGTCGGATCTCCGATTACAGTTTGGATGGTGCAGTAGCTCTGGGT
ACTGGGCGCTAGCGGCTGCCGCACTTGAACACTCACACAATCATACAACG
TTTCGCGGTACCAGATTATACGATCATGGTAAGGCTGCAGCGGTGGGAGT
G
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Coding sequence (CDS) from alignment at H-paniculata_contig45193:1078..1578-

>mRNA_H-paniculata_contig45193.11361.1 ID=mRNA_H-paniculata_contig45193.11361.1|Name=mRNA_H-paniculata_contig45193.11361.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1002bp|location=Sequence derived from alignment at H-paniculata_contig45193:1078..1578- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCAGAGCCGTAGTGTTTGACCAACGGCGTGCATGCGAATTTAACCACCT
GCGCATCTCCCCTGTAGGAGTGGTCGAGGACAAATTTCGTGATGTACATG
ACCTGTCTTTCCCACGAACCCCCCCGGATGGTGTTTCAAGTGTGAATGCG
GATACTGATTTTGCACGTGCCCCACAAGTTGAACTTGGTCATGTCATCAA
AGACGTCTTGTTGCGTATCATATACTTGCGGCAAAAGCATGGGCCAAGCG
CTCGTATCGTAATCAGTAAGATGGATGTCAGCGAAGCATACAGGCAAATC
CCTATTGATCCCGCTGGTGCTAATTTATTCAGCTATGAGATTGAAGTAGT
TGTAGTGTCGGATCTCCGATTACAGTTTGGATGGTGCAGTAGCTCTGGGT
ACTGGGCGCTAGCGGCTGCCGCACTTGAACACTCACACAATCATACAACG
TTTCGCGGTACCAGATTATACGATCATGGTAAGGCTGCAGCGGTGGGAGT
GGGCAGAGCCGTAGTGTTTGACCAACGGCGTGCATGCGAATTTAACCACC
TGCGCATCTCCCCTGTAGGAGTGGTCGAGGACAAATTTCGTGATGTACAT
GACCTGTCTTTCCCACGAACCCCCCCGGATGGTGTTTCAAGTGTGAATGC
GGATACTGATTTTGCACGTGCCCCACAAGTTGAACTTGGTCATGTCATCA
AAGACGTCTTGTTGCGTATCATATACTTGCGGCAAAAGCATGGGCCAAGC
GCTCGTATCGTAATCAGTAAGATGGATGTCAGCGAAGCATACAGGCAAAT
CCCTATTGATCCCGCTGGTGCTAATTTATTCAGCTATGAGATTGAAGTAG
TTGTAGTGTCGGATCTCCGATTACAGTTTGGATGGTGCAGTAGCTCTGGG
TACTGGGCGCTAGCGGCTGCCGCACTTGAACACTCACACAATCATACAAC
GTTTCGCGGTACCAGATTATACGATCATGGTAAGGCTGCAGCGGTGGGAG
TG
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