mRNA_H-paniculata_contig45151.11359.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig45151.11359.1
Unique NamemRNA_H-paniculata_contig45151.11359.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig45151.11359.1 vs. uniprot
Match: A0A6H5L1I2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1I2_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 4.590e-11
Identity = 37/58 (63.79%), Postives = 40/58 (68.97%), Query Frame = -1 
Query:   22 LSKETQQGEGARVATELPPPPVPATGTTASSDATTVPAWRSQTSSGVDRLQNEGVDVD 195
             S+E +QG G  VA  LPPPPVP  GT AS DATT PAWRSQ+  GV  L  EGVDVD
Sbjct:  295 FSEEQKQGRGDAVAEALPPPPVPVQGTKASPDATTAPAWRSQSMDGVASLHAEGVDVD 352
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45151.11359.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L1I2_9PHAE4.590e-1163.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig45151contigH-paniculata_contig45151:239..568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size330
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930355.5255175-CDS-H-paniculata_contig45151:238..5681622930355.5255175-CDS-H-paniculata_contig45151:238..568Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45151 239..568 +
1691481255.17896-CDS-H-paniculata_contig45151:238..5681691481255.17896-CDS-H-paniculata_contig45151:238..568Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45151 239..568 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig45151.11359.1prot_H-paniculata_contig45151.11359.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig45151 239..568 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig45151.11359.1

>prot_H-paniculata_contig45151.11359.1 ID=prot_H-paniculata_contig45151.11359.1|Name=mRNA_H-paniculata_contig45151.11359.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
QTLFPSAIHVDTLILQSVNSRRCLRSPRRNRRSVGRRSCPCSGNRRRGQL
RCHPSALTLLCLLRQHCPTVDNRARILLLTPALLLTRRCCRRATGLLLKP
RLRLSGSLRR
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mRNA from alignment at H-paniculata_contig45151:239..568+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig45151.11359.1 ID=mRNA_H-paniculata_contig45151.11359.1|Name=mRNA_H-paniculata_contig45151.11359.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=330bp|location=Sequence derived from alignment at H-paniculata_contig45151:239..568+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAACACTATTTCCCAGCGCTATCCACGTCGACACCCTCATTCTGCAGTC
TGTCAACTCCAGAAGATGTCTGAGATCTCCACGCCGGAACCGTCGTAGCG
TCGGACGACGCAGTTGTCCCTGTAGCGGGAACAGGCGGCGGGGGCAACTC
CGTTGCCACCCTAGCGCCCTCACCCTGCTGTGTCTCCTTCGACAACACTG
CCCGACCGTGGACAACCGAGCGCGCATCTTGCTGTTGACCCCCGCGCTGC
TGCTGACCCGCCGATGTTGTCGGCGCGCGACCGGCCTGCTGTTGAAGCCA
CGCCTGCGACTGAGCGGATCCTTGCGCCGC
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Coding sequence (CDS) from alignment at H-paniculata_contig45151:239..568+

>mRNA_H-paniculata_contig45151.11359.1 ID=mRNA_H-paniculata_contig45151.11359.1|Name=mRNA_H-paniculata_contig45151.11359.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig45151:239..568+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAACACTATTTCCCAGCGCTATCCACGTCGACACCCTCATTCTGCAGTC
TGTCAACTCCAGAAGATGTCTGAGATCTCCACGCCGGAACCGTCGTAGCG
TCGGACGACGCAGTTGTCCCTGTAGCGGGAACAGGCGGCGGGGGCAACTC
CGTTGCCACCCTAGCGCCCTCACCCTGCTGTGTCTCCTTCGACAACACTG
CCCGACCGTGGACAACCGAGCGCGCATCTTGCTGTTGACCCCCGCGCTGC
TGCTGACCCGCCGATGTTGTCGGCGCGCGACCGGCCTGCTGTTGAAGCCA
CGCCTGCGACTGAGCGGATCCTTGCGCCGCCAAACACTATTTCCCAGCGC
TATCCACGTCGACACCCTCATTCTGCAGTCTGTCAACTCCAGAAGATGTC
TGAGATCTCCACGCCGGAACCGTCGTAGCGTCGGACGACGCAGTTGTCCC
TGTAGCGGGAACAGGCGGCGGGGGCAACTCCGTTGCCACCCTAGCGCCCT
CACCCTGCTGTGTCTCCTTCGACAACACTGCCCGACCGTGGACAACCGAG
CGCGCATCTTGCTGTTGACCCCCGCGCTGCTGCTGACCCGCCGATGTTGT
CGGCGCGCGACCGGCCTGCTGTTGAAGCCACGCCTGCGACTGAGCGGATC
CTTGCGCCGC
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