mRNA_H-paniculata_contig44767.11284.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig44767.11284.1
Unique NamemRNA_H-paniculata_contig44767.11284.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44767.11284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig44767contigH-paniculata_contig44767:316..1032 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size237
Cds size237
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930346.0035722-CDS-H-paniculata_contig44767:315..4561622930346.0035722-CDS-H-paniculata_contig44767:315..456Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44767 316..456 -
1691481250.9624043-CDS-H-paniculata_contig44767:315..4561691481250.9624043-CDS-H-paniculata_contig44767:315..456Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44767 316..456 -
1622930346.0234582-CDS-H-paniculata_contig44767:936..10321622930346.0234582-CDS-H-paniculata_contig44767:936..1032Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44767 937..1032 -
1691481250.9946744-CDS-H-paniculata_contig44767:936..10321691481250.9946744-CDS-H-paniculata_contig44767:936..1032Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44767 937..1032 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig44767.11284.1prot_H-paniculata_contig44767.11284.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig44767 316..1032 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig44767.11284.1

>prot_H-paniculata_contig44767.11284.1 ID=prot_H-paniculata_contig44767.11284.1|Name=mRNA_H-paniculata_contig44767.11284.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
GGSSKKAAGSEGIRSGILGTRRAGRRTHAIDEAGLSRTRVTSRKQYLRSQ
LEANTKRVLRSHTAACGRQLRSRTERRK*
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mRNA from alignment at H-paniculata_contig44767:316..1032-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig44767.11284.1 ID=mRNA_H-paniculata_contig44767.11284.1|Name=mRNA_H-paniculata_contig44767.11284.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=717bp|location=Sequence derived from alignment at H-paniculata_contig44767:316..1032- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGGGAGCAGCAAGAAAGCTGCTGGTAGCGAGGGAATCAGGAGCGGGAT
TCTCGGTACGCGGAGGGCAGGGAGGAGGACCCACGCAATCGACGAGGTGT
GGTGATTTGGCGACATTTGGGTAGTTACTGCTTGGACTAAAGTACCTTAG
TTGTTGTGCTCGACTCACGGGTGGCTTAGCTGCACGCGTCTTGAAAAGCA
AACTCCTTCACGTATAGCCCCTCCCTGTAGTGCTGGGCTTCTGAGGTGTC
CCCTGTGCTTACTGATTCAGTCATGAAGAAAACCTCACGCACGTGTCCCC
TTTTCCCCTGCTGTGATCCAATTTCCACCCTTTGAGGAGTAAGTAAACCC
AATTCTATTTGTTCGCTTCATTCAGTCAGCCTTGTGCGCGGTGTGCGTTG
TAATTTGTGTTGAAACAAAATACGTGTGAGCGTTATCGAAGATGGCAAAC
AGTACACCTAACCGCTAACAGTGTCCCACCCTATCCACGTCTTACCCCCT
CACTAAATACCATTTGCGTGTTTCTTTGCGCACGGCTCTTGACAAATTCA
AATTCGCTGCTACCAACAAACCTCAGGCCGGGCTATCGCGAACGCGGGTA
ACATCTCGAAAACAATACCTTCGAAGCCAACTTGAGGCAAACACCAAACG
AGTGCTGCGAAGTCACACAGCGGCATGCGGGCGGCAGCTCAGGAGCAGGA
CGGAACGCCGGAAATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig44767:316..1032-

>mRNA_H-paniculata_contig44767.11284.1 ID=mRNA_H-paniculata_contig44767.11284.1|Name=mRNA_H-paniculata_contig44767.11284.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig44767:316..1032- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGGGAGCAGCAAGAAAGCTGCTGGTAGCGAGGGAATCAGGAGCGGGAT
TCTCGGTACGCGGAGGGCAGGGAGGAGGACCCACGCAATCGACGAGGGTG
GGAGCAGCAAGAAAGCTGCTGGTAGCGAGGGAATCAGGAGCGGGATTCTC
GGTACGCGGAGGGCAGGGAGGAGGACCCACGCAATCGACGAGGCCGGGCT
ATCGCGAACGCGGGTAACATCTCGAAAACAATACCTTCGAAGCCAACTTG
AGGCAAACACCAAACGAGTGCTGCGAAGTCACACAGCGGCATGCGGGCGG
CAGCTCAGGAGCAGGACGGAACGCCGGAAATGAGCCGGGCTATCGCGAAC
GCGGGTAACATCTCGAAAACAATACCTTCGAAGCCAACTTGAGGCAAACA
CCAAACGAGTGCTGCGAAGTCACACAGCGGCATGCGGGCGGCAGCTCAGG
AGCAGGACGGAACGCCGGAAATGA
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