mRNA_H-paniculata_contig44733.11279.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig44733.11279.1
Unique NamemRNA_H-paniculata_contig44733.11279.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig44733.11279.1 vs. uniprot
Match: A0A6H5JPV6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPV6_9PHAE)

HSP 1 Score: 184 bits (468), Expect = 4.900e-49
Identity = 120/352 (34.09%), Postives = 178/352 (50.57%), Query Frame = 1
Query:    1 GGSQKHGIDLGSTFAPVCRIESQRLLRAVAAVHSWSVIAMDFSTAFLNRKLDEEVYIRQAPGDQ------------------------------------------------CVYIKVNRDNFIMLTIYIDDLLITGPNNTAVAKVRSTLMAKFTMTYFGDATQILGIDILQDKECGTISINQHHYMISLLKKFGMDDGNPVHTPGTGKELTANPAGNVLLDEQGTRYYQAIVGSLICLTQSMRMDIAFSRDSNFELTGFRDASYSTGDPEKASSSLEKIMAQSTTEAELIAVSTCVKQGIYLSNILGKLVWKNFRSVGIFCDNKGALLLAGQGNYGSRSTHLAICFVGLRD 912
            G  Q+ G   G  +APV R+ S R+L A+A  H W V  +D   AFLN   D +VY+R APGD+                                                CVYI V+ D   +LTIY+DD+LITG N   V++ +  LM  F MT  G+  +++GI++ +D E GT++I+Q  Y   +L+++GM+  NPV TPG G EL+     + LL  + T+ +QAI+GSL+  T  +           F L G    SY      KA      + AQ+T EAEL A+S   ++ +Y+SN + ++ ++ FRSV I  D+ GAL +A    + SR+ H+A+ F  LR+
Sbjct:   63 GHRQRAGRHFGRNYAPVTRLGSIRMLFAIACEHGWEVYQLDVVAAFLNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGMSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILTIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDTQRFQAIIGSLLSTTGYL-----------FFLGGGL-ISYGA----KA----RTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFETFRSVPINSDSTGALTVASNAMFSSRTKHIALRFF-LRE 393          
BLAST of mRNA_H-paniculata_contig44733.11279.1 vs. uniprot
Match: A0A6H5KDK0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDK0_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 5.460e-46
Identity = 113/369 (30.62%), Postives = 183/369 (49.59%), Query Frame = 1
Query:   10 QKHGIDLGSTFAPVCRIESQRLLRAVAAVHSWSVIAMDFSTAFLNRKLDEEVYIRQAPG-------------------------------DQCVYIKVNRDNFIMLTIYIDDLLITGPNNTAVAKVRSTLMAKFTMTYFGDATQILGIDILQDKECGTISINQHHYMISLLKKFGMDDGNPVHTPG-TGKELTANPAGNVLLDEQGTRY---YQAIVGSLICLTQSM------RMDIAFSRDS----------NFELTGFRDASYSTGDPEKASSSL-----------------EKIMAQSTTEAELIAVSTCVKQGIYLSNILGKLVWKNFRSVGIFCDNKGALLLAGQGNYGSRSTHLAICFVGLRD 912
            Q+ G D G ++APVCRI   R+  A+   H+W +  +D   AFLN   D +VY+R APG                               D CVY+  + +  ++LT+Y+DD+LITG +   V + +  L  +F MT  G+  +ILGID+ +D E GT++I+Q HY+ +LL++FGM + NP    G T K++  +  G++L   Q TR+   Y A+  S  C   +       + D+ + R +           F L  F D+S+    P+   S+                  + + AQST EAE+ A+S   ++ +Y+SN + +L +K F SV I  D+ GAL +AG   +  R+  +A+ +  +R+
Sbjct:   50 QEPGQDYGRSYAPVCRIGGIRMTCAIGCHHNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPDQILGPTDKKIYQSMTGSILNLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHDVRYLRGNPVLPIVYKRGQFRLAAFTDSSFGAN-PDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNATHSQRTKLVALRYFFIRE 417          
BLAST of mRNA_H-paniculata_contig44733.11279.1 vs. uniprot
Match: A0A6H5KGS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGS8_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 3.670e-42
Identity = 78/206 (37.86%), Postives = 124/206 (60.19%), Query Frame = 1
Query:    1 GGSQKHGIDLGSTFAPVCRIESQRLLRAVAAVHSWSVIAMDFSTAFLNRKLDEEVYIRQAPGDQCVYIKVNR----DNFIMLTIYIDDLLITGPNNTAVAKVRSTLMAKFTMTYFGDATQILGIDILQDKECGTISINQHHYMISLLKKFGMDDGNPVHTPGTGKELTANPAGNVLLDEQGTRYYQAIVGSLICLTQSMRMDIAFS 606
            G  Q+ G D G ++APVCRI S R+  A+   ++W +  +D   AFLN   D +VY+R APG              +  ++LT+Y+DD+LITG +   V + +  L  +F MT  G+  +ILGID+ +D E GT++I+Q HY+ +LL++FGM + NPV TPG G E++ N   + +L     + YQ++ GS++ L Q  R D++++
Sbjct:   47 GHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDIVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYA 252          
BLAST of mRNA_H-paniculata_contig44733.11279.1 vs. uniprot
Match: A0A6H5JG80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG80_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 1.930e-41
Identity = 109/374 (29.14%), Postives = 179/374 (47.86%), Query Frame = 1
Query:    1 GGSQKHGIDLGSTFAPVCRIESQRLLRAVAAVHSWSVIAMDFSTAFLNRKLDEEVYIRQAPGD--------QCVYIKVNRDNF-----------------------IMLTIYIDDLLITGPNNTAVAKVRSTLMAKFTMTYFGDATQILGIDILQDKECGTISINQHHYMISLLKKFGMDDGNPVHTPGTGKE------LTANPAG----NVLLDEQ-------------GTRYYQAIVGSLICLTQSMRMDIAFSRDSNFELTGFRDASYSTGDPEKASSS----------------LEKIMAQSTTEAELIAVSTCVKQGIYLSNILGKLVWKNFRSVGIFCDNKGALLLAGQGNYGSRSTHLAICFVGLRD 912
            G  Q+ G D G ++ PVCR+ S R+  A+   ++W +  +D   AFLN   D +VY+R APG         + +  K+ R  +                       ++LT+Y+DD+LITG ++  V + +  L  +F MT  G+  +ILGID+ +D + GT++I+Q H++ + L++FGM + NPV  PG G E      L ANP      N+ +D++                  + +   L CL  +  + I + R   F L  F D+S+      + SS+                 + + AQST E E+ A+S+  ++ +Y S  + +L +K F SV I  D+ GAL +AG   +  R+ H+A+    L D
Sbjct:   63 GPRQEPGQDYGRSYTPVCRVGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGELIVYKLERSLYGLSQSPALWNDTLDESLTVGNIIVILTVYVDDILITGGDHQLVDQTKKELTDRFEMTDMGEVKRILGIDVERDYQRGTLAISQEHHVNTFLERFGMQEANPVSIPGFGAEIFPRINLRANPRTHGQENLPVDDEKHPLPGPVNPAQVNMTAAEHVDSVLRCLRGNPVLPIVYRR-GQFRLAAFTDSSFGANPDNRRSSTGYLFFLAAGLISYGAKTQTLTAQSTVEPEIQALSSSAREAVYTSKFMTELNFKTFGSVPINSDSTGALTVAGNTMHSQRTKHVALSEHQLAD 435          
BLAST of mRNA_H-paniculata_contig44733.11279.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 2.140e-39
Identity = 98/325 (30.15%), Postives = 164/325 (50.46%), Query Frame = 1
Query:  106 SVIAMDFSTAFLNRKLDEEVYI---RQAPGDQCVYIKVNRDNFIMLTIYIDDLLITGPNNTAVAKVRSTLMAKFTMTYFGDATQILGIDILQDKECGTISINQHHYMISLLKKFGMDDGNPVHTPGTGKELTANPAGNVLLDEQGTRYYQAIVGSLICLTQSMRMDIAFS------------------------------------RDSNFELTGFRDASYSTGDPEKASSSL-----------------EKIMAQSTTEAELIAVSTCVKQGIYLSNILGKLVWKNFRSVGIFCDNKGALLLAGQGNYGSRSTHLAICFVGLRD 912
            S+  +  S +  N  +++ + I   ++   D CVYI V+ D   +L IY+DD+LITG N   V++ +  LM  F MT  G+  +++GI++ +D E GT++I+Q  Y   +L+++GM+  NPV TPG G EL+     + LL  +  + +QAI GSL+ L Q  R D++++                                    +   F L+ F D+S+    P+   S+                  + + AQ+T EAEL A+S   ++ +Y+SN + ++ +K FRSV I  D+ GAL +A    + SR+ H+A+ F  LR+
Sbjct:  368 SLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILAIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGKFRLSCFTDSSFGAN-PDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRE 691          
BLAST of mRNA_H-paniculata_contig44733.11279.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 7.730e-39
Identity = 98/325 (30.15%), Postives = 163/325 (50.15%), Query Frame = 1
Query:  106 SVIAMDFSTAFLNRKLDEEVYI---RQAPGDQCVYIKVNRDNFIMLTIYIDDLLITGPNNTAVAKVRSTLMAKFTMTYFGDATQILGIDILQDKECGTISINQHHYMISLLKKFGMDDGNPVHTPGTGKELTANPAGNVLLDEQGTRYYQAIVGSLICLTQSMRMDIAFS------------------------------------RDSNFELTGFRDASYSTGDPEKASSSL-----------------EKIMAQSTTEAELIAVSTCVKQGIYLSNILGKLVWKNFRSVGIFCDNKGALLLAGQGNYGSRSTHLAICFVGLRD 912
            S+  +  S +  N  +++ + I   ++   D CVYI V+ D   +L IY+DD+LITG N   V+  +  LM  F MT  G+  +++GI++ +D E GT++I+Q  Y   +L+++GM+  NPV TPG G EL+     + LL  +  + +QAI GSL+ L Q  R D++++                                    +   F L+ F D+S+    P+   S+                  + + AQ+T EAEL A+S   ++ +Y+SN + ++ +K FRSV I  D+ GAL +A    + SR+ H+A+ F  LR+
Sbjct: 1147 SLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILAIYVDDILITGGNKEIVSSKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGAN-PDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRN 1470          
BLAST of mRNA_H-paniculata_contig44733.11279.1 vs. uniprot
Match: A0A6H5J6N1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6N1_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 7.670e-37
Identity = 96/323 (29.72%), Postives = 165/323 (51.08%), Query Frame = 1
Query:   25 DLGSTFAPVCRIESQRLLRAVAAVHSWSVIAMDFSTAFLNRKLDEEVYIRQAPGDQCVYIKVNRDNFIMLTIYIDDLLITGPNNTAVAKVRSTLMAKFTMTYFGDATQILGIDILQDKECGTISINQHHYMISLLKKFGMDDGNPVHTPGTGKELTANPAGNVLLDEQGTRYYQAIVGSLIC----------LTQSMRMDIAFSRDSNFELTGFRDASY-STGDPEKASSS---------------LEKIMAQSTTEAELIAVSTCVKQGIYLSNILGKLVW-KNFRSVGIFCDNKGALLLAGQGNYGSRSTHLAICFVGLRD 912
            D G TFAPVCR++S R++ A+AA   W           ++ KL E +       D CVYI       +++T+Y+DDL++ G N   +  +++ LM +F M+  G+ + +LG+ + +D E GT++I Q  Y  S+L +FGM++  P   P  G EL+       +L+++ T+   A V S             L  +    I + R   F+LT F DA++ S  D  +++SS               L+ +   ST EAEL+A +  +K+ ++ SN++ +L + + F  V ++ +N   L + G   Y SR+ H+A+ F  +R+
Sbjct:  178 DCGGTFAPVCRLQSVRMVFAIAAEMDWEKT--------IDLKLIE-LGCNPLKSDSCVYIYKRNHTIVIITLYVDDLVVIGGNIEVIEAIKTKLMEQFQMSVLGNVSLVLGMQVTRDGEHGTLTITQADYTRSILARFGMEECKPTSIPSVGSELSTEQPTETVLNKEKTQSQLARVMSKAAKAHMGAAKHLLRGTQDFCITYKR-GGFKLTAFSDANWESNPDNARSTSSYMIMMSKAPVSFKTGLQDLTVMSTMEAELLAAALTMKEAVFCSNMMTELGFGQQFGQVPLYINNTATLHVIGNQAYSSRTKHIALLFFCVRE 490          
BLAST of mRNA_H-paniculata_contig44733.11279.1 vs. uniprot
Match: A0A2N9H6T1_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9H6T1_FAGSY)

HSP 1 Score: 144 bits (363), Expect = 6.640e-35
Identity = 98/311 (31.51%), Postives = 171/311 (54.98%), Query Frame = 1
Query:    1 GGSQKHGIDLGSTFAPVCRIESQRLLRAVAAVHSWSVIAMDFSTAFLNRKLDEEVYI---RQAPGDQCVYIKVNRD-NFIMLTIYIDDLLITGPNNTAVAKVRSTLMAKFTMTYFGDATQILGIDILQDKECGTISINQHHYMISLLKKFGMDDGNPVHTP-GTGKELTAN--PAGNVLLDEQGTRYYQAIVGSLICLTQSMRMDIAFSRDSNFELTGFRDASYSTGDPEKASSSLEKIMAQSTTEAELIAVSTCVKQGIYLSNILGKLVWKNFRSVGIFCDNKGALLLAGQGNYGSRSTHLAICFVGLRD 912
            G SQ+HGID    F+ V R  S R + A+ A  +  +  +D  TAFL+  L+EE+++    +   D CVY+++  D ++I L +Y+DD+LI   +   V +++S L  +F M   G A +ILG++I +D+    + ++Q +Y+  + + F M D  P+ TP      L+ +  P     ++      Y + VG L+      R ++A +  +N  + G+ DA+Y TG P    S+L+ I+A STTEAE +AV+  VK+ ++L  ++ +L   N   V + CD++ A+ LA    Y +R+ H+ + F  +R+
Sbjct:  604 GYSQRHGIDYDEVFSLVVRHTSIRAVLALVAHQNLELEQLDVKTAFLHGNLEEEIFMIGYTRCEYDCCVYVRILEDGSYIFLLLYVDDMLIAAKSMCEVNRLKSLLHKEFEMKDLGAAKKILGMEIRRDRGARKLWLSQKNYIRKVFENFSMLDAKPMSTPLAKNFRLSGSQCPKNEEEIENMSKVPYASAVGCLMYAMVCTRPNLAHAPGTN-SVVGYVDANY-TGGPICWKSTLQSIVAMSTTEAEYMAVAEAVKEVLWLKGLVKEL-GLNQGGVQMHCDSQSAIYLAKNQVYHARTKHINVRFHKIRE 911          
BLAST of mRNA_H-paniculata_contig44733.11279.1 vs. uniprot
Match: A0A6H5JST7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JST7_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 1.590e-34
Identity = 74/230 (32.17%), Postives = 122/230 (53.04%), Query Frame = 1
Query:    1 GGSQKHGIDLGSTFAPVCRIESQRLLRAVAAVHSWSVIAMDFSTAFLNRKLDEEVYIRQAPG----------------------------DQCVYIKVNRDNFIMLTIYIDDLLITGPNNTAVAKVRSTLMAKFTMTYFGDATQILGIDILQDKECGTISINQHHYMISLLKKFGMDDGNPVHTPGTGKELTANPAGNVLLDEQGTRYYQAIVGSLICLTQSMRMDIAFS 606
            G  Q+ G D G ++AP CRI S R+  A+   ++W +  +D   AFLN   D +VY+R APG                            D CVY+  + +  ++LT+ +DD+LITG +   V + +  L  +F MT  G+          +D E GT+++ Q HY+ +LL+++GM + NPV TPG G E++ N   + +L  +  + YQ+++GS++ L Q  R D++F+
Sbjct:   47 GHRQEPGQDYGRSYAPSCRIRSIRVTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGELIVYKLERSLYGLSQTQSDPCVYVYTSGNIIVILTVNVDDILITGGDQQLVDQKKKELTDRFDMTDMGE----------RDYEQGTLAMPQEHYVNTLLERYGMQEANPVSTPGYGAEISTNQPQDQILGPRDKKIYQSMMGSILYLAQCTRFDLSFA 266          
BLAST of mRNA_H-paniculata_contig44733.11279.1 vs. uniprot
Match: A0A2N9G211_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9G211_FAGSY)

HSP 1 Score: 142 bits (359), Expect = 2.260e-34
Identity = 102/323 (31.58%), Postives = 168/323 (52.01%), Query Frame = 1
Query:    1 GGSQKHGIDLGSTFAPVCRIESQRLLRAVAAVHSWSVIAMDFSTAFLNRKLDEEVYIRQAPG-------------DQCVYIKVNRD-NFIMLTIYIDDLLITGPNNTAVAKVRSTLMAKFTMTYFGDATQILGIDILQDKECGTISINQHHYMISLLKKFGMDDGNPVHTPGTGK-ELTAN--PAGNVLLDEQGTRYYQAIVGSLICLTQSMRMDIAF--SRDSNFELTGFRDASYSTGDPEKASSSLEKIMAQSTTEAELIAVSTCVKQGIYLSNILGKLVWKNFRSVGIFCDNKGALLLAGQGNYGSRSTHLAICFVGLRD 912
            G SQ+HGID    F+PV R  S R + A+ A     +  +D  TAFL+  L+EE+++ Q  G             D CVY+++  D ++I L +Y+DD+LI   +   V +++S L  +F M   G A +ILG++I +D+    + ++Q +Y+  +L+KF M D  PV TP      L+ +  P     ++      Y + VG L+      R D+A   S  S    TG+      +G P    S+L+ I+A STTEAE +AV+   K+ ++L  ++ +L   N   V + CD++ A+ LA    Y +R+ H+ + F  +R+
Sbjct:  594 GYSQRHGIDYDEVFSPVVRHTSIRAVLALVAHQDLELEQLDVKTAFLHGNLEEEIFMVQPEGVQATLIGYTRCEYDCCVYVRILEDGSYIFLLLYVDDMLIAAKSMCEVNRLKSLLHKEFEMKDLGAAKKILGMEIRKDRGARKLWLSQKNYIRKVLEKFSMLDAKPVSTPLANHFRLSGSQCPKNEEEIENMSKVPYASAVGCLMYAMVCTRPDLAHAVSTVSRRSTTGY--VFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKGLVKEL-GLNQGGVQMHCDSQSAIYLAKNQVYHARTKHIDVRFHKIRE 913          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44733.11279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JPV6_9PHAE4.900e-4934.09Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KDK0_9PHAE5.460e-4630.62Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KGS8_9PHAE3.670e-4237.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG80_9PHAE1.930e-4129.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF46_9PHAE2.140e-3930.15Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KHG5_9PHAE7.730e-3930.15Uncharacterized protein n=11 Tax=Ectocarpus sp. CC... [more]
A0A6H5J6N1_9PHAE7.670e-3729.72Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9H6T1_FAGSY6.640e-3531.51Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JST7_9PHAE1.590e-3432.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2N9G211_FAGSY2.260e-3431.58Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig44733contigH-paniculata_contig44733:286..1528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.5
Seed ortholog evalue3.3e-28
Seed eggNOG ortholog164328.Phyra87462
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHJF@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons4
Model size915
Cds size915
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig44733.11279.1prot_H-paniculata_contig44733.11279.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig44733 286..1528 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930345.3458896-CDS-H-paniculata_contig44733:285..4701622930345.3458896-CDS-H-paniculata_contig44733:285..470Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44733 286..470 +
1691481250.7293105-CDS-H-paniculata_contig44733:285..4701691481250.7293105-CDS-H-paniculata_contig44733:285..470Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44733 286..470 +
1622930345.3714237-CDS-H-paniculata_contig44733:610..10241622930345.3714237-CDS-H-paniculata_contig44733:610..1024Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44733 611..1024 +
1691481250.7390027-CDS-H-paniculata_contig44733:610..10241691481250.7390027-CDS-H-paniculata_contig44733:610..1024Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44733 611..1024 +
1622930345.4019244-CDS-H-paniculata_contig44733:1135..12131622930345.4019244-CDS-H-paniculata_contig44733:1135..1213Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44733 1136..1213 +
1691481250.7492175-CDS-H-paniculata_contig44733:1135..12131691481250.7492175-CDS-H-paniculata_contig44733:1135..1213Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44733 1136..1213 +
1622930345.44309-CDS-H-paniculata_contig44733:1290..15281622930345.44309-CDS-H-paniculata_contig44733:1290..1528Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44733 1291..1528 +
1691481250.7568471-CDS-H-paniculata_contig44733:1290..15281691481250.7568471-CDS-H-paniculata_contig44733:1290..1528Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44733 1291..1528 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig44733.11279.1

>prot_H-paniculata_contig44733.11279.1 ID=prot_H-paniculata_contig44733.11279.1|Name=mRNA_H-paniculata_contig44733.11279.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=305bp
GGSQKHGIDLGSTFAPVCRIESQRLLRAVAAVHSWSVIAMDFSTAFLNRK
LDEEVYIRQAPGDQCVYIKVNRDNFIMLTIYIDDLLITGPNNTAVAKVRS
TLMAKFTMTYFGDATQILGIDILQDKECGTISINQHHYMISLLKKFGMDD
GNPVHTPGTGKELTANPAGNVLLDEQGTRYYQAIVGSLICLTQSMRMDIA
FSRDSNFELTGFRDASYSTGDPEKASSSLEKIMAQSTTEAELIAVSTCVK
QGIYLSNILGKLVWKNFRSVGIFCDNKGALLLAGQGNYGSRSTHLAICFV
GLRD*
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mRNA from alignment at H-paniculata_contig44733:286..1528+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig44733.11279.1 ID=mRNA_H-paniculata_contig44733.11279.1|Name=mRNA_H-paniculata_contig44733.11279.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1243bp|location=Sequence derived from alignment at H-paniculata_contig44733:286..1528+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGGGAGTCAGAAACACGGAATAGACCTTGGAAGCACCTTCGCACCGGT CTGCAGAATCGAGAGCCAGCGACTTCTACGGGCCGTCGCAGCTGTTCACA GTTGGAGCGTTATCGCCATGGACTTTTCAACTGCTTTCCTGAACAGAAAG CTTGACGAAGAAGTCTACATACGGCAAGCCCCGGGGTTCGAGATCAAGGA CTCACAGGAGCGACCGCTCATCATGAAGCTGCACAAATCAATCTATGGTC TTCGTCAGTCTCCAATGCATGGCATAAAACCATCGATACAGATCTTCGGA ACATTGGCTTTATTTCTACAATGAGCGACCAGTGCGTGTACATCAAAGTT AACAGGGACAACTTCATCATGCTTACGATATACATCGACGATCTGCTCAT CACCGGACCCAACAATACGGCCGTAGCCAAAGTCCGTTCTACACTCATGG CCAAATTCACCATGACTTACTTTGGAGACGCGACGCAAATTCTAGGGATC GACATCCTTCAGGACAAGGAGTGCGGCACCATCAGCATAAATCAGCACCA CTACATGATATCACTGTTGAAGAAATTCGGTATGGACGACGGCAACCCAG TTCACACACCAGGCACAGGCAAGGAGCTGACGGCAAACCCTGCAGGAAAT GTCTTACTGGACGAACAAGGCACAAGATATTATCAGGCCATTGTCGGGAG TCTCATCTGCTTGACTCAGTCTATGCGTATGGACATAGCGTTCGCTGTCT CGCAAGCGGCGCGTTTCATAGCCAATCTTACTTCCTTTCACATGGGAAGC GCGAAACGCATCTTGCGCTACCTAAAAGGCGCGCCAAACCTAAAAATCAG CTTCAGTCGTGACTCCAACTTCGAGCTAACCGGCTTCCGCGACGCCTCCT ACAGCACTGGTGACCCCGAGAAAGCTAGGTCAACCTCAGGCAAGATGTAA TTCCTCTCCGGTGGAGTTGTTCATAATTCCTCTCCGGTGGAGTTATTCAT TTCAGTTCGAGCCTTGAGAAAATTATGGCTCAGTCAACCACCGAGGCAGA ACTAATCGCCGTGAGCACCTGTGTTAAACAAGGAATTTACCTGTCCAACA TCCTCGGAAAGCTCGTATGGAAGAACTTCCGCAGCGTCGGCATCTTCTGC GACAACAAGGGAGCGCTACTTCTTGCAGGCCAAGGTAACTATGGAAGTAG GTCTACACACCTGGCCATTTGTTTTGTCGGGCTCCGCGATTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig44733:286..1528+

>mRNA_H-paniculata_contig44733.11279.1 ID=mRNA_H-paniculata_contig44733.11279.1|Name=mRNA_H-paniculata_contig44733.11279.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1830bp|location=Sequence derived from alignment at H-paniculata_contig44733:286..1528+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGGGAGTCAGAAACACGGAATAGACCTTGGAAGCACCTTCGCACCGGT
CTGCAGAATCGAGAGCCAGCGACTTCTACGGGCCGTCGCAGCTGTTCACA
GTTGGAGCGTTATCGCCATGGACTTTTCAACTGCTTTCCTGAACAGAAAG
CTTGACGAAGAAGTCTACATACGGCAAGCCCCGGGGGAGGGAGTCAGAAA
CACGGAATAGACCTTGGAAGCACCTTCGCACCGGTCTGCAGAATCGAGAG
CCAGCGACTTCTACGGGCCGTCGCAGCTGTTCACAGTTGGAGCGTTATCG
CCATGGACTTTTCAACTGCTTTCCTGAACAGAAAGCTTGACGAAGAAGTC
TACATACGGCAAGCCCCGGGCGACCAGTGCGTGTACATCAAAGTTAACAG
GGACAACTTCATCATGCTTACGATATACATCGACGATCTGCTCATCACCG
GACCCAACAATACGGCCGTAGCCAAAGTCCGTTCTACACTCATGGCCAAA
TTCACCATGACTTACTTTGGAGACGCGACGCAAATTCTAGGGATCGACAT
CCTTCAGGACAAGGAGTGCGGCACCATCAGCATAAATCAGCACCACTACA
TGATATCACTGTTGAAGAAATTCGGTATGGACGACGGCAACCCAGTTCAC
ACACCAGGCACAGGCAAGGAGCTGACGGCAAACCCTGCAGGAAATGTCTT
ACTGGACGAACAAGGCACAAGATATTATCAGGCCATTGTCGGGAGTCTCA
TCTGCTTGACTCAGTCTATGCGTATGGACATAGCCGACCAGTGCGTGTAC
ATCAAAGTTAACAGGGACAACTTCATCATGCTTACGATATACATCGACGA
TCTGCTCATCACCGGACCCAACAATACGGCCGTAGCCAAAGTCCGTTCTA
CACTCATGGCCAAATTCACCATGACTTACTTTGGAGACGCGACGCAAATT
CTAGGGATCGACATCCTTCAGGACAAGGAGTGCGGCACCATCAGCATAAA
TCAGCACCACTACATGATATCACTGTTGAAGAAATTCGGTATGGACGACG
GCAACCCAGTTCACACACCAGGCACAGGCAAGGAGCTGACGGCAAACCCT
GCAGGAAATGTCTTACTGGACGAACAAGGCACAAGATATTATCAGGCCAT
TGTCGGGAGTCTCATCTGCTTGACTCAGTCTATGCGTATGGACATAGCCT
TCAGTCGTGACTCCAACTTCGAGCTAACCGGCTTCCGCGACGCCTCCTAC
AGCACTGGTGACCCCGAGAAAGCTAGCTTCAGTCGTGACTCCAACTTCGA
GCTAACCGGCTTCCGCGACGCCTCCTACAGCACTGGTGACCCCGAGAAAG
CTAGTTCGAGCCTTGAGAAAATTATGGCTCAGTCAACCACCGAGGCAGAA
CTAATCGCCGTGAGCACCTGTGTTAAACAAGGAATTTACCTGTCCAACAT
CCTCGGAAAGCTCGTATGGAAGAACTTCCGCAGCGTCGGCATCTTCTGCG
ACAACAAGGGAGCGCTACTTCTTGCAGGCCAAGGTAACTATGGAAGTAGG
TCTACACACCTGGCCATTTGTTTTGTCGGGCTCCGCGATTAATTCGAGCC
TTGAGAAAATTATGGCTCAGTCAACCACCGAGGCAGAACTAATCGCCGTG
AGCACCTGTGTTAAACAAGGAATTTACCTGTCCAACATCCTCGGAAAGCT
CGTATGGAAGAACTTCCGCAGCGTCGGCATCTTCTGCGACAACAAGGGAG
CGCTACTTCTTGCAGGCCAAGGTAACTATGGAAGTAGGTCTACACACCTG
GCCATTTGTTTTGTCGGGCTCCGCGATTAA
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