prot_H-paniculata_contig44679.11267.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig44679.11267.1
Unique Nameprot_H-paniculata_contig44679.11267.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length117
Homology
BLAST of mRNA_H-paniculata_contig44679.11267.1 vs. uniprot
Match: A0A6A3BY51_HIBSY (Histone acetyltransferase n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3BY51_HIBSY)

HSP 1 Score: 109 bits (272), Expect = 2.280e-25
Identity = 55/115 (47.83%), Postives = 75/115 (65.22%), Query Frame = 0
Query:    4 VCSACEKGNASKQPVKKHREERTTEPLELVHTDIAGPVD-RSFGGCRFAIIFVDDYRRMCKVYTLRQKSEALWALKQFERDVARANGLRIKRLRSDQGEEYTGKPFRQFCAENGI 117
            +C AC KG   +Q  +  R  R   PLE+VHTDIAGP D  S GG R+ + F+DD+ R C +Y L++KSEAL  L++F+    + +G  +K LRSD+G EYT K F +FC E+GI
Sbjct:  363 LCEACIKGKQHRQSFEVGRSWRARRPLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLREFKAMSEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGI 477          
BLAST of mRNA_H-paniculata_contig44679.11267.1 vs. uniprot
Match: A0A4Y1REW6_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1REW6_PRUDU)

HSP 1 Score: 106 bits (265), Expect = 1.930e-24
Identity = 50/118 (42.37%), Postives = 74/118 (62.71%), Query Frame = 0
Query:    1 KLGVCSACEKGNASKQPVKKHREERTTEPLELVHTDIAGPV-DRSFGGCRFAIIFVDDYRRMCKVYTLRQKSEALWALKQFERDVARANGLRIKRLRSDQGEEYTGKPFRQFCAENGI 117
            K GVC  C  G + ++P +  +  R   PLEL+HTD+ GP+ + S GG ++ I F+DDY RMC VY LR KS  +   K+F+  V   +G  +K+LRSD+G EYT   F ++C++ G+
Sbjct:  404 KEGVCEGCVYGKSHREPFENEKPWRAKNPLELIHTDVCGPMQNESIGGNKYFITFIDDYSRMCWVYFLRNKSSVISVFKKFKVFVELQSGFNLKKLRSDRGGEYTSHEFLEYCSDLGM 521          
BLAST of mRNA_H-paniculata_contig44679.11267.1 vs. uniprot
Match: A0A4Y1R3A1_PRUDU (BURP domain-containing protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R3A1_PRUDU)

HSP 1 Score: 106 bits (265), Expect = 1.940e-24
Identity = 50/118 (42.37%), Postives = 74/118 (62.71%), Query Frame = 0
Query:    1 KLGVCSACEKGNASKQPVKKHREERTTEPLELVHTDIAGPV-DRSFGGCRFAIIFVDDYRRMCKVYTLRQKSEALWALKQFERDVARANGLRIKRLRSDQGEEYTGKPFRQFCAENGI 117
            K GVC  C  G + ++P +  +  R   PLEL+HTD+ GP+ + S GG ++ I F+DDY RMC VY LR KS  +   K+F+  V   +G  +K+LRSD+G EYT   F ++C++ G+
Sbjct:   96 KEGVCEGCVYGKSHREPFENEKPWRAKNPLELIHTDVCGPMQNESIGGNKYFITFIDDYSRMCWVYFLRNKSSVISVFKKFKVFVELQSGFNLKKLRSDRGGEYTSHEFLEYCSDLGM 213          
BLAST of mRNA_H-paniculata_contig44679.11267.1 vs. uniprot
Match: K8YS61_NANGC (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YS61_NANGC)

HSP 1 Score: 100 bits (250), Expect = 4.960e-24
Identity = 57/124 (45.97%), Postives = 75/124 (60.48%), Query Frame = 0
Query:    1 KLGVCSACEKGNASKQPVKKHREERTTEPLELVHTDIAGPVD-RSFGGCRFAIIFVDDYRRMCKVYTLRQKSEALWALKQFERDVA------RANGLRIKRLRSDQGEEYTGKPFRQFCAENGI 117
            K GVC+ CE+   +K+       ER  EPLELVHTD+ GPV+  S GG R+AI F DDY R   VY ++ KS++L  LK++ +D+       + N LR   LRSD G EYTG  F+ FC  +GI
Sbjct:   33 KPGVCATCERAKHTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSDSLDCLKRYIQDMNISFRDHKVNTLRG--LRSDNGGEYTGVDFKNFCKNHGI 154          
BLAST of mRNA_H-paniculata_contig44679.11267.1 vs. uniprot
Match: A0A6N2K750_SALVM (Integrase catalytic domain-containing protein n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2K750_SALVM)

HSP 1 Score: 104 bits (260), Expect = 9.150e-24
Identity = 52/115 (45.22%), Postives = 72/115 (62.61%), Query Frame = 0
Query:    4 VCSACEKGNASKQPVKKHREERTTEPLELVHTDIAGPVDR-SFGGCRFAIIFVDDYRRMCKVYTLRQKSEALWALKQFERDVARANGLRIKRLRSDQGEEYTGKPFRQFCAENGI 117
            VC  C  G   ++   K    R++ PL+LVHTD+ GP+   S GG R+ I F+DDY R+C VY LR KS AL   K+++  V   +G ++K++RSD+G EYT   F +FCAE GI
Sbjct:   19 VCEGCVTGKHHREKFDKGEAWRSSYPLQLVHTDLCGPMQHESNGGNRYFITFIDDYSRVCWVYFLRNKSNALTVFKKYKALVELQSGFKVKKMRSDRGGEYTSSEFERFCAEMGI 133          
BLAST of mRNA_H-paniculata_contig44679.11267.1 vs. uniprot
Match: A0A6D2HJM6_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HJM6_9BRAS)

HSP 1 Score: 104 bits (260), Expect = 9.350e-24
Identity = 51/115 (44.35%), Postives = 71/115 (61.74%), Query Frame = 0
Query:    4 VCSACEKGNASKQPVKKHREERTTEPLELVHTDIAGPV-DRSFGGCRFAIIFVDDYRRMCKVYTLRQKSEALWALKQFERDVARANGLRIKRLRSDQGEEYTGKPFRQFCAENGI 117
             C AC  G  S++   K  + +T E LE+VHTD+ GP+ ++S  G R+ ++F+DDY  MC VY L+QKSE     K+F+  V + +G  IK LRSD G E+T   F +FC E GI
Sbjct:  489 ACKACNLGKQSRKSFPKESQTKTKEKLEIVHTDVCGPMQNQSIDGSRYYVLFLDDYTHMCWVYFLKQKSETFLKFKKFKAMVEKQSGCVIKTLRSDGGGEFTSHEFNRFCEEEGI 603          
BLAST of mRNA_H-paniculata_contig44679.11267.1 vs. uniprot
Match: W7TGQ6_9STRA (Retrotransposon unclassified n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGQ6_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.810e-23
Identity = 58/124 (46.77%), Postives = 74/124 (59.68%), Query Frame = 0
Query:    1 KLGVCSACEKGNASKQPVKKHREERTTEPLELVHTDIAGPVD-RSFGGCRFAIIFVDDYRRMCKVYTLRQKSEALWALKQFERDVA------RANGLRIKRLRSDQGEEYTGKPFRQFCAENGI 117
            K GVC  CE+   +K+       ER  EPLELVHTD+ GPV+  S GG R+AI F DDY R   VY ++ KSE+L  LK++ +D+       + N LR   LRSD G EYTG  F+ FC  +GI
Sbjct:   53 KPGVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMNISFRDHKVNTLRG--LRSDNGGEYTGIDFKNFCKNHGI 174          
BLAST of mRNA_H-paniculata_contig44679.11267.1 vs. uniprot
Match: A0A2I0V7V6_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0V7V6_9ASPA)

HSP 1 Score: 97.1 bits (240), Expect = 2.100e-23
Identity = 45/115 (39.13%), Postives = 69/115 (60.00%), Query Frame = 0
Query:    4 VCSACEKGNASKQPVKKHREERTTEPLELVHTDIAGPV-DRSFGGCRFAIIFVDDYRRMCKVYTLRQKSEALWALKQFERDVARANGLRIKRLRSDQGEEYTGKPFRQFCAENGI 117
            +C  C  G   ++        R  +PL+L+HTD+ GP+   SFG  R+ + F+DDY R   VY L++KSEA    K+F+    + +G  IK +RSD+G E+T K F+++C E+GI
Sbjct:   19 ICEGCVFGKQPRKSFPNEASFRAKKPLQLIHTDVCGPIAPASFGKHRYFLTFIDDYSRKIWVYFLKEKSEAFTMFKKFKASTEKESGFLIKSIRSDRGGEFTSKAFKEYCEEHGI 133          
BLAST of mRNA_H-paniculata_contig44679.11267.1 vs. uniprot
Match: A0A0S7KIZ2_9TELE (POLX (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7KIZ2_9TELE)

HSP 1 Score: 99.0 bits (245), Expect = 4.210e-23
Identity = 47/117 (40.17%), Postives = 69/117 (58.97%), Query Frame = 0
Query:    2 LGVCSACEKGNASKQPVKKHREERTTEPLELVHTDIAGPVD-RSFGGCRFAIIFVDDYRRMCKVYTLRQKSEALWALKQFERDVARANGLRIKRLRSDQGEEYTGKPFRQFCAENGI 117
            L  C AC  G  ++QP K   E R+   L+L+H+D+ GP+   S GG ++ + F+DD+ R CKVY ++ KSE L   K+FER  +   G ++ RLRSD G EY    F+++    GI
Sbjct:   85 LPFCEACVDGKLTRQPCKAVGEIRSKRKLQLIHSDVCGPMQTESIGGSKYFVTFIDDFSRCCKVYFMKHKSEVLSKFKEFERTFSNECGHKVARLRSDNGGEYISSEFQEYLKAQGI 201          
BLAST of mRNA_H-paniculata_contig44679.11267.1 vs. uniprot
Match: W7SYS1_9STRA (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7SYS1_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 4.650e-23
Identity = 54/122 (44.26%), Postives = 73/122 (59.84%), Query Frame = 0
Query:    1 KLGVCSACEKGNASKQPVKKHREERTTEPLELVHTDIAGPVD-RSFGGCRFAIIFVDDYRRMCKVYTLRQKSEALWALKQFERDVARAN-GLRIKRL---RSDQGEEYTGKPFRQFCAENGI 117
            K GVC  CE+   +K+       ER  EPLELVHTD+ GPV+  S GG R+AI F DDY R   VY ++ KSE+L  LK++ + ++  +   ++K L   RSD   EYTG  F+ FC  +GI
Sbjct:   15 KPGVCGTCERAKHTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIKGISVLHRDSKVKTLIGLRSDNDGEYTGVDFKNFCKNHGI 136          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44679.11267.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A3BY51_HIBSY2.280e-2547.83Histone acetyltransferase n=2 Tax=Hibiscus syriacu... [more]
A0A4Y1REW6_PRUDU1.930e-2442.37Transposable element protein n=1 Tax=Prunus dulcis... [more]
A0A4Y1R3A1_PRUDU1.940e-2442.37BURP domain-containing protein n=1 Tax=Prunus dulc... [more]
K8YS61_NANGC4.960e-2445.97Retrovirus-related pol polyprotein from transposon... [more]
A0A6N2K750_SALVM9.150e-2445.22Integrase catalytic domain-containing protein n=1 ... [more]
A0A6D2HJM6_9BRAS9.350e-2444.35Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
W7TGQ6_9STRA1.810e-2346.77Retrotransposon unclassified n=1 Tax=Nannochlorops... [more]
A0A2I0V7V6_9ASPA2.100e-2339.13Retrovirus-related Pol polyprotein from transposon... [more]
A0A0S7KIZ2_9TELE4.210e-2340.17POLX (Fragment) n=1 Tax=Poeciliopsis prolifica Tax... [more]
W7SYS1_9STRA4.650e-2344.26Retrovirus-related pol polyprotein from transposon... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 19..117
e-value: 2.7E-16
score: 61.4
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 27..117
e-value: 7.0E-14
score: 52.0
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 25..117
score: 13.206
NoneNo IPR availablePANTHERPTHR11439:SF250coord: 3..117
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 3..117
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 24..117

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig44679contigH-paniculata_contig44679:1253..1603 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig44679.11267.1mRNA_H-paniculata_contig44679.11267.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig44679 1253..1603 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig44679.11267.1 ID=prot_H-paniculata_contig44679.11267.1|Name=mRNA_H-paniculata_contig44679.11267.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
KLGVCSACEKGNASKQPVKKHREERTTEPLELVHTDIAGPVDRSFGGCRF
AIIFVDDYRRMCKVYTLRQKSEALWALKQFERDVARANGLRIKRLRSDQG
EEYTGKPFRQFCAENGI
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR001584Integrase_cat-core
IPR039537Retrotran_Ty1/copia-like
IPR012337RNaseH-like_sf