mRNA_H-paniculata_contig44673.11265.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig44673.11265.1
Unique NamemRNA_H-paniculata_contig44673.11265.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44673.11265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig44673contigH-paniculata_contig44673:103..774 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size465
Cds size417
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig44673.11265.1prot_H-paniculata_contig44673.11265.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig44673 103..728 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930343.6198304-CDS-H-paniculata_contig44673:102..3861622930343.6198304-CDS-H-paniculata_contig44673:102..386Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44673 103..386 +
1691481250.1006434-CDS-H-paniculata_contig44673:102..3861691481250.1006434-CDS-H-paniculata_contig44673:102..386Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44673 103..386 +
1622930343.6375504-CDS-H-paniculata_contig44673:595..7281622930343.6375504-CDS-H-paniculata_contig44673:595..728Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44673 596..728 +
1691481250.1134212-CDS-H-paniculata_contig44673:595..7281691481250.1134212-CDS-H-paniculata_contig44673:595..728Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44673 596..728 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930343.655537-UTR-H-paniculata_contig44673:728..7741622930343.655537-UTR-H-paniculata_contig44673:728..774Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig44673 729..774 +
1691481250.1276076-UTR-H-paniculata_contig44673:728..7741691481250.1276076-UTR-H-paniculata_contig44673:728..774Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig44673 729..774 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig44673.11265.1

>prot_H-paniculata_contig44673.11265.1 ID=prot_H-paniculata_contig44673.11265.1|Name=mRNA_H-paniculata_contig44673.11265.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=139bp
VLATTSGNPRTTPSDEHINRDGERERGEGQRVEAGVSRSREPSRGGRRRR
PVCAICGVCGHAAFECNVSETEENFGIQCWNCARGTTRRQTTRHRSYVVP
LPQRARGIECRRARRHGGFNLDCGRSHAHHLLQCILCT*
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mRNA from alignment at H-paniculata_contig44673:103..774+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig44673.11265.1 ID=mRNA_H-paniculata_contig44673.11265.1|Name=mRNA_H-paniculata_contig44673.11265.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=672bp|location=Sequence derived from alignment at H-paniculata_contig44673:103..774+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTACTGGCCACCACAAGCGGAAACCCGAGAACAACCCCCTCTGACGAGCA
CATAAATCGTGACGGCGAACGAGAGCGCGGTGAGGGCCAAAGGGTGGAAG
CAGGCGTTTCGCGGTCGAGAGAGCCATCAAGAGGAGGACGGCGACGACGA
CCGGTTTGCGCCATTTGCGGCGTGTGCGGCCATGCCGCTTTCGAGTGTAA
CGTTTCTGAAACGGAGGAAAACTTTGGCATCCAATGCTGGAATTGCGCAA
GGGGAACCACTCGGCGGCAAACGACACGGCACAGGTGAACACGTGGGCTA
CGTAGAAGAGCATAATATAGCCTTGCACCCAGTACCCCAACGTCACTTTA
TACCCCGATGGTTGCTTGATGCCGTTGCCTGTGCGCCGCGATGGATGAGG
TCATCTAAATCACACGAACACTGGATAATTAATTCAGGCTGCACCGGGCA
TCACCTGACCCCGCAACGCAATCTCTTCCAAATTTTTCGCCAGGTCGTAC
GTAGTCCCACTGCCACAGCGGGCAAGGGGAATTGAATGTAGAAGGGCAAG
GAGACATGGTGGGTTTAATTTGGACTGCGGAAGGAGCCATGCGCATCATC
TTCTGCAATGTATTTTATGTACCTGAAGCATCAGACAGTATTTTATCGGT
GGAGCGGATGGTGAGCCAAGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig44673:103..774+

>mRNA_H-paniculata_contig44673.11265.1 ID=mRNA_H-paniculata_contig44673.11265.1|Name=mRNA_H-paniculata_contig44673.11265.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at H-paniculata_contig44673:103..774+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTACTGGCCACCACAAGCGGAAACCCGAGAACAACCCCCTCTGACGAGCA
CATAAATCGTGACGGCGAACGAGAGCGCGGTGAGGGCCAAAGGGTGGAAG
CAGGCGTTTCGCGGTCGAGAGAGCCATCAAGAGGAGGACGGCGACGACGA
CCGGTTTGCGCCATTTGCGGCGTGTGCGGCCATGCCGCTTTCGAGTGTAA
CGTTTCTGAAACGGAGGAAAACTTTGGCATCCAATGCTGGAATTGCGCAA
GGGGAACCACTCGGCGGCAAACGACACGGCACAGGTACTGGCCACCACAA
GCGGAAACCCGAGAACAACCCCCTCTGACGAGCACATAAATCGTGACGGC
GAACGAGAGCGCGGTGAGGGCCAAAGGGTGGAAGCAGGCGTTTCGCGGTC
GAGAGAGCCATCAAGAGGAGGACGGCGACGACGACCGGTTTGCGCCATTT
GCGGCGTGTGCGGCCATGCCGCTTTCGAGTGTAACGTTTCTGAAACGGAG
GAAAACTTTGGCATCCAATGCTGGAATTGCGCAAGGGGAACCACTCGGCG
GCAAACGACACGGCACAGGTCGTACGTAGTCCCACTGCCACAGCGGGCAA
GGGGAATTGAATGTAGAAGGGCAAGGAGACATGGTGGGTTTAATTTGGAC
TGCGGAAGGAGCCATGCGCATCATCTTCTGCAATGTATTTTATGTACCTG
AGTCGTACGTAGTCCCACTGCCACAGCGGGCAAGGGGAATTGAATGTAGA
AGGGCAAGGAGACATGGTGGGTTTAATTTGGACTGCGGAAGGAGCCATGC
GCATCATCTTCTGCAATGTATTTTATGTACCTGA
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