prot_H-paniculata_contig44560.11248.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig44560.11248.1
Unique Name	prot_H-paniculata_contig44560.11248.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	45

Homology

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BLAST of mRNA_H-paniculata_contig44560.11248.1 vs. uniprot
Match: D8LDD4_ECTSI (PDZ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDD4_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 2.250e-9
Identity = 23/38 (60.53%), Postives = 29/38 (76.32%), Query Frame = 0

Query:    1 QLSNCNGAGQCGTCVVDVEKSDGWDERPNWEGDKLKVR 38
            +++NCNG GQCGTCVV V +++GWD R  WE  KLK R
Sbjct:  198 KMTNCNGGGQCGTCVVQVVEAEGWDPRSEWEAGKLKGR 235

[Close]

BLAST of mRNA_H-paniculata_contig44560.11248.1 vs. uniprot
Match: A0A836CP36_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP36_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 3.410e-5
Identity = 21/37 (56.76%), Postives = 26/37 (70.27%), Query Frame = 0

Query:    2 LSNCNGAGQCGTCVVDVEKSDGWDERPNWEGDKLKVR 38
            ++NCNGAGQCGTCV  V    GW  R ++E +KLK R
Sbjct:  178 MTNCNGAGQCGTCVTKVV-GQGWSPRSDYEANKLKGR 213

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig44560.11248.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig44560.11248.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LDD4_ECTSI	2.250e-9	60.53	PDZ domain-containing protein n=2 Tax=Ectocarpus T...	[more]
A0A836CP36_9STRA	3.410e-5	56.76	2Fe-2S ferredoxin-type domain-containing protein n...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 4..36 e-value: 4.0E-5 score: 23.5
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	54292	2Fe-2S ferredoxin-like	coord: 3..36

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig44560	contig	H-paniculata_contig44560:1355..1489 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig44560.11248.1	mRNA_H-paniculata_contig44560.11248.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig44560 1355..1489 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig44560.11248.1 ID=prot_H-paniculata_contig44560.11248.1|Name=mRNA_H-paniculata_contig44560.11248.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=45bp
QLSNCNGAGQCGTCVVDVEKSDGWDERPNWEGDKLKVRIAICDR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001041	2Fe-2S_ferredoxin-type
IPR036010	2Fe-2S_ferredoxin-like_sf