mRNA_H-paniculata_contig4447.11232.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4447.11232.1
Unique NamemRNA_H-paniculata_contig4447.11232.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4447.11232.1 vs. uniprot
Match: D7FMG4_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMG4_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 1.190e-51
Identity = 120/264 (45.45%), Postives = 150/264 (56.82%), Query Frame = 2 
Query:   35 GKGGGVEKRAYP---RLPLTVATPAATSSRNSTPVG----VPTISRLAKGGRFSVALDNTFPPRRSGYPEEALLEEPGSTCRAMVPYRPGSNCSWRTCGDSLGVSNRGLLPLLALPPSPNPNFPA-------------GTAEGGSWVSRRAAPSKREIPSEVFPIVFQYMDAATLCSVSPVSREWRKQGNDDRYWGRLCRSRFNVTPDSFAPPPDPIKRLYQLQYGSLRAMRKGC--HQRYHSAPPAIPAQTSAQLLMGLMAAN 760
            G+G GVEKR +P   R      TP    + + +  G        S ++KGGRFS   +      R G     LL E G  CRA+VPY      S         +      PLLALPPS   + P+              ++  GS+  +  A  + +IP EVFPI FQYMDA TLC+VS VSREW+KQGNDD+YW  LCR+RFNV PD+FAPPPDPIKRLYQLQ+GS +AM +G   H  +  APP IP  TSAQLL+GL+A+N
Sbjct:   15 GRGTGVEKRWHPASTRHSGPGTTPYRREAVDDSDAGGEGSTKIFSHISKGGRFSDRGE------REGT-SIVLLPEAGPGCRALVPYTASPARS--------RLPLPAHPPLLALPPSLGCDAPSLYSSCSLSSCNSSSSSPNGSF--KGGAARRVDIPLEVFPIAFQYMDALTLCTVSSVSREWKKQGNDDQYWRHLCRARFNVIPDAFAPPPDPIKRLYQLQHGSFKAMCRGDRRHGLHSGAPPVIPRHTSAQLLVGLLASN 261
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4447.11232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMG4_ECTSI1.190e-5145.45F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4447contigH-paniculata_contig4447:1766..11467 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.5
Seed ortholog evalue1.3e-06
Seed eggNOG ortholog4792.ETI48184
Hectar predicted targeting categoryother localisation
EggNOG free text desc.A Receptor for Ubiquitination Targets
EggNOG OGs2CDWZ@1,2S60F@2759,3QFI0@4776
Ec32 ortholog descriptionF-box domain
Ec32 orthologEc-05_000820.1
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons5
Model size1736
Cds size756
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930339.1642072-UTR-H-paniculata_contig4447:1765..17781622930339.1642072-UTR-H-paniculata_contig4447:1765..1778Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4447 1766..1778 +
1691481248.0799704-UTR-H-paniculata_contig4447:1765..17781691481248.0799704-UTR-H-paniculata_contig4447:1765..1778Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4447 1766..1778 +
1622930339.269471-UTR-H-paniculata_contig4447:10500..114671622930339.269471-UTR-H-paniculata_contig4447:10500..11467Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4447 10501..11467 +
1691481248.1489623-UTR-H-paniculata_contig4447:10500..114671691481248.1489623-UTR-H-paniculata_contig4447:10500..11467Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4447 10501..11467 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930339.188803-CDS-H-paniculata_contig4447:1778..19681622930339.188803-CDS-H-paniculata_contig4447:1778..1968Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4447 1779..1968 +
1691481248.090846-CDS-H-paniculata_contig4447:1778..19681691481248.090846-CDS-H-paniculata_contig4447:1778..1968Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4447 1779..1968 +
1622930339.202721-CDS-H-paniculata_contig4447:3562..38371622930339.202721-CDS-H-paniculata_contig4447:3562..3837Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4447 3563..3837 +
1691481248.1000345-CDS-H-paniculata_contig4447:3562..38371691481248.1000345-CDS-H-paniculata_contig4447:3562..3837Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4447 3563..3837 +
1622930339.2182987-CDS-H-paniculata_contig4447:5964..60651622930339.2182987-CDS-H-paniculata_contig4447:5964..6065Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4447 5965..6065 +
1691481248.1115735-CDS-H-paniculata_contig4447:5964..60651691481248.1115735-CDS-H-paniculata_contig4447:5964..6065Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4447 5965..6065 +
1622930339.2329829-CDS-H-paniculata_contig4447:9158..92531622930339.2329829-CDS-H-paniculata_contig4447:9158..9253Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4447 9159..9253 +
1691481248.1272027-CDS-H-paniculata_contig4447:9158..92531691481248.1272027-CDS-H-paniculata_contig4447:9158..9253Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4447 9159..9253 +
1622930339.251629-CDS-H-paniculata_contig4447:10405..105001622930339.251629-CDS-H-paniculata_contig4447:10405..10500Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4447 10406..10500 +
1691481248.1385808-CDS-H-paniculata_contig4447:10405..105001691481248.1385808-CDS-H-paniculata_contig4447:10405..10500Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4447 10406..10500 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4447.11232.1prot_H-paniculata_contig4447.11232.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4447 1779..10500 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4447.11232.1

>prot_H-paniculata_contig4447.11232.1 ID=prot_H-paniculata_contig4447.11232.1|Name=mRNA_H-paniculata_contig4447.11232.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=252bp
MEYSASTGKGGGVEKRAYPRLPLTVATPAATSSRNSTPVGVPTISRLAKG
GRFSVALDNTFPPRRSGYPEEALLEEPGSTCRAMVPYRPGSNCSWRTCGD
SLGVSNRGLLPLLALPPSPNPNFPAGTAEGGSWVSRRAAPSKREIPSEVF
PIVFQYMDAATLCSVSPVSREWRKQGNDDRYWGRLCRSRFNVTPDSFAPP
PDPIKRLYQLQYGSLRAMRKGCHQRYHSAPPAIPAQTSAQLLMGLMAANA
M*
back to top

mRNA from alignment at H-paniculata_contig4447:1766..11467+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4447.11232.1 ID=mRNA_H-paniculata_contig4447.11232.1|Name=mRNA_H-paniculata_contig4447.11232.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9702bp|location=Sequence derived from alignment at H-paniculata_contig4447:1766..11467+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTTCGCGAGAGCATGGAATACTCGGCATCTACGGGGAAGGGGGGAGGAG
TTGAAAAGAGGGCGTACCCTCGACTTCCGCTTACTGTTGCTACTCCTGCT
GCAACTTCCAGCAGAAATTCGACTCCAGTGGGCGTACCAACGATCTCTCG
CTTGGCCAAGGGCGGCCGCTTTTCCGTTGCATTGGACAACACTTTTCCGC
CACGTACGTTTCGTTTTTTCGCTTTTTTCGCTTTTGCTCTTCTTTTTTTC
GTGTTTTCCATATTATGATGAAAAATGCGGAAAAAGGCGAAATTTGACCG
GTCAGTTGCCAAAGTACATATTAAAGCTTGAAACCGTCTTGCCCGATGCA
AAACCAAAGTTCCAAGGTATTTTTTCAGCGTGTGTGTACGGTAGGCATAC
TGATATTTTGTTCCTTGGTTCTATGGAGAACGGAATCCGTTCGTCTGCTT
CGGATCCATGTATGTATGTCCATGTATGTATGTAGAGCTAAATGTATTCT
CTGACCCGCCCTCAGGAAGAATGAAAATGGCGTATTCGTACGTCCTCTAC
CGGTAGGCAATATCACACGGAATTCCGGGAGGTGGGCGCGGCGAGGTTGA
AGTAGTTGCGAGAACCAGAAGTTGATTTGTGTTGCCAACGTATGTTTTGA
CCCAATCGTTCGCATTCAATCGCTGAACTTCGATGTAAAACAAATCGTAC
GAAATCTACAAGTGTAAATATAGATAGAAAGTACTGCAGTCACTATATTA
CATGAATCACTGTATGTCGATCAACTGCAGTGTGGCTCATTTTCAACAAA
ACGTTTGGTTAGTTTTGCGGAGAATATATTTATACACATGTACTTCGTCC
GTCTCATAGGTATGCTTAATTATGATTATAGAAGCACTTAAACGTCTCCG
TTTTTTTTGTGGAGTTCTGCCTGTTTTTTGGGTTGAAACCCAATTTTTTG
GTACCAATAGTTGACTTTTAACACCAAAACACACGCCGTGAAAAAGTACT
CGGCCGAAAAAGGGTCTTTTTTAGGGATTTTCGGTATTTTGCCATAACAG
TATATCGTGATAAGAGGCGCACTTATAATATCTCCGATTAAATATATATA
TATATATATATATATATATATATATATAGAATCCTCCATGTTCTCGGGTT
GAACACCAACATATTGAATCAAATTGTTTACTTTTAACATCAAAACACAC
GCCGTGAAAAATGCACGTTGTCGAAAAAGACCAAAAAGTGCTCCTCTTTT
GTCAAGTTCTATGGGGAAAAGTCCCTAGAAAGGGTCTTCTTTCGGCCAAG
TCCTTTTGTTTCACGGCGCATATTTCGGTGTTAAAAGTTGAATGTTTGAC
CCAAAAAATTGGATTTCAACCAAAAAAACTTGCAAAATTCCATTAAACAA
AAAATCTTAAATGGGGAATATGAACATACTTTTGAGAGAGAGGAAGAAAA
TAGATATATCCCATGTACGCGTACAATTATTTCTTTATTTGTGCGAGTAT
AAAGCTGTACTGTGGATTAAAAATGTGTGCCTGCGGTAGAGTTGTATCCT
GCTCTTCTAGATGCTCGTTTTCTGCTTCGATAGTTTGCTGTGTTCATCCG
CAGCTCTCACACCTTCCTCGCCAAATTGTTTTCACCTCCTTGTGTTACCT
TCGAGCCGTGCTGTAATTCCAATTGCCAATACCACTTGGATGTGTCTGTG
GCATATTTTCATTCTGCTTTGACTTTACGCTCGTTTTCGGCTCTTAACCG
TCACTGCGGTCATCTGTAACATCACCCCCGAATCCCCACACCATTAGGTC
GCAGCGGATACCCCGAAGAAGCCCTCCTTGAGGAACCCGGGTCGACCTGT
CGTGCCATGGTCCCGTACCGACCCGGATCGAATTGCTCATGGCGGACATG
TGGTGATTCACTTGGAGTTAGTAACAGAGGTCTTCTTCCCCTTTTAGCCC
TCCCCCCTTCTCCCAATCCGAATTTCCCGGCTGGAACAGCGGAGGGCGGT
TCTTGGGTGTCGCGTCGGGCTGCGCCCTCGAAGCGAGAGATTCCGTCTGA
AGTTTTTCCCATAGTGTTTCAGGTGAGGCTCTGGAGGGTGATGGGGGGGA
CTCATGCACAAGATGTGAAAGCAGCAAGCGAAAACTGTCTACACAAAAGG
AAATGATGTAGGAATTGACGATCAGCGCGTAGGAGAGCACACGGCCATTG
ATCGTATCGGGATGTCTCAGCTGGTGCAGTTAGTGTAGACCAGGGCGGTG
AGTCTGTATCTCCATCCGTTTGGAGACCATGCCCTCTAATTGATATACTA
GTAGTTTCGCTGGTAAGTGTATACAACTGCACTTTCAGGTCAGCTGCATG
ATCTTGACATGGATACGATGATGGAGTTTTTGTGTAAATTTTATGGAGCT
ACTACCTGTGGAAAGTGGCTTGGTTAATTCGTGAGGACGCCCCCCCTCCT
TTTCCCCTCGCGCGCTGTTTTTGTGATGGATTAGACTTGCACCCCCGGGA
CAAATACGAATGGAGCATTCGCAACTATCTCTATCGATTAGTATTTGTCT
TGGGTAAACATGTATTTATTCGTTTACAAGTCTATGAATGATCACTCTAC
AGATGGTCACCAGATGGTCGTATACCCGGCGAACAGTCACATACAGGTCC
TGTTTATTTTCCGGGTGGTAGTGTACAGGTTGAATACTCTATCTGCGCGA
GCTTTTCGATGCTCGATGGTATATCGAGCACACTGCATATTATTCCCATC
ATATGGACATCTTCCTCAACTCAAACATATACAGTGTTCATGCCAGATTT
CTCGTATTTATTCGTATCTTGTATTCGTGTTTGTCCAAGATGTGTAGACT
TGTCCCTCTAGGCTTACATTGATTTGCCTGGGACAACACGTTGCTGGTTT
CAGGGTACGGTCAAGCCCCATCTTTGACCGCATGTGGTGCTAGAGGTACT
CCTTGTCTGAGCCTTTTCTGGAATCAACAATCACTTGAGTTCAAGAGCAC
GTCGAATTCGGTACGAGTTGGTTTCAGTTCGATTTATTTTTCGAAGCAAC
GTGATATTCAGTAGAATTGGTGTGGCGTGGTAATTACCTACTTGACGTCG
GTGCGGTGCCCAGATTACTTTATTTCAGTATGTACATCTGCCTGGTCCTA
TCATTTACCTCATTCATCGTGTTGGTTTCATGTACTCTCTTTTCATCGCC
CCTGCCTTTTTTCCAAAGTGTCTTTTGGGATGATCAGGGCCAAGCAACGC
GTTGGTCATTGAAACCGCCCACCAATCATGTTAATTTTGCACGTATTATG
ACGTATATTTCTTTGTTGAGAAGAACCGATCCCTTGTTTAGTGGAGGCCA
GTCAAAACTGTCACCACTGCTATTTGGCCCAATATATGCTGGTTAATACC
AATAAGCACTATAGTAACACGGGTAGCTCTCTGTCCTAGGTGCACGTTGC
TGCAGCTAACATTATTTTTTTAGTTATTCAATAATCGTTTCTCATTCATA
TCTGCTAGCCTCCCTTAAAAAGCAAACATATTCGCTCATGTCCAGCCAGA
TCTGTCGTGGGTTGCGTTGATCTGGGTCAGGTTACAGGCTGCTCGAGACC
TGTTCTAGCAGGCACGCTGTCGCACGACTATGGCTGACTGTTGTTATTTG
GTGGTCATACCCTGTGGTGCCGCGATGGGAGGGGAGCCACCGCCAATTTG
AAAATCTAAACACCACCTCTGACCGAAACCTAACCTTGACCTACTCCAGC
TGCGGGCGAGGGCTTGCTCACTACTAAATTATGCCGTTATCCCTGCTGTA
TATCTTCAACGAGTCTATCCATACCCCAACGCCTACCCCCATCCTCTAGG
ACCACCCTCCTACCACGATAGAGAGGCGTTTGAATCCTGGTATTACGAAA
AAAGGCTTATACCGGTTCTAGGAGAGAACATAACCTGAACACGTAAGGTT
GAGGTAGATAGGGTGAGTAAAGCATTTATTTAGCCATAGTTGGCAGTATA
GGGAAGAGGGGTTGGTCTTCGGAAACTGCTCTGATAGGAAAAAAGTCCTC
TCGTCCTGAGGATGCGTGGTCAATGATCTAATAACTACGACATGCAAAAC
ATCAGCACGCCCCCCCCGCTCCCTACCGCTGCTGCCGTGTCTGGGATGGA
CGCGTGTTTTTGTGTGTTTTGCCGCTATGCGCTCCCTCCCTGCCCTCAGT
ATATGGACGCTGCTACCCTGTGCAGCGTGTCGCCGGTTAGTCGGGAGTGG
AGGAAGCAAGGAAATGATGACCGTTACTGGGGAAGACTCTGCCGTAGCAG
GTGCTGTCATGTATGGAGAAAGAATGGGGCATTTGGGCAAGTACCTTCGA
TAAAGAAGAATATGTCATGTAGCAAGGGGCTGAGGTCAGACTTGCCCGTG
GTCACAGCAGCAAGCGCCGTGTTTAGTGGTTGTTTTTACGGTAAGGCCCA
GGTTAGGATTATGGTGCTGAAATGGTTGAGACATTCGTTATGGACAATTA
CTGGTACATGACGGTTTTGGGCTAAGGGTGTATGTAGTATATAGTATTAT
GTACTAGCGCTGCAAGGGTTAGCGCTAGGATTGGCCGGAGTGGGGACAGC
AAGAAACCGGCAACCGTGTTGCAGGAGAAGATCCTACTGGTGCAGAAAAG
CAAATATGTATATATGTGTGTATATATTTGTTTTTTCAAGATTCCCAGAA
GAACAAGATGTAATATATTTTGATACTCATACCTTATAGTCATGTCTCAG
CTTCGTACGCTGGTTCTATTCTAACCCTAACCCTAACGTAACCCAAATGT
CACATTGCGCTCATTTGTTGGTCCTTTTTTATTTGCCAGGGTTAGATTTT
CGATTTCTACAGAGCTGTTGCAGGGGAGAGGAGAAAGGGAGCGATGGGGT
TTTCTCCGCTTGAGCAAGCATACCAGCGAGTTGTTTTTCGCGTATTCTGC
TTTGGGTTGAGATTGTCCTTATGATGCCTGGCTCTGCAATACCAGAAAAA
CATTGCCATAATACTTACTGTACGTGGGTGATCTTCATACCTAATCCCTC
TGTTTCATAATTTTGGCCCGTTACGGAATTATCCCAATGTCTCCTCGGGA
TGATGTCCGATTTCAAAACGGAATGTTGCGTCGGATTCCTTGATACATTT
ATAATACCGATCAATGTGTTGTTTTTATTATTCCTTAACACCACTTACCT
ACCAATCGAGCGTCGCCGCGGCGGCCTCTCGGTCCACTGGGACCTTTTTT
ATTCATCTGAGCGATGCCTTTTTCTTGTGCCTGTGTGCTCTACCTCAAAG
TCGTTCTTTCCCTTGGCTCTTAAAACCTGAACAAGATTCTACCTCTTGAA
CAGATTCTGCCATACCTACTCTAGTGTGTATGCTTCATAAGCGTCGTACA
GGCGTTTTACTTCCTCTACGAGGCCATCGATCGTACCGAAACGCTCCCCC
CATACCCTGCTCTTCAGAGACCCCAAAAATCCCAAATCGTTGATGTTGAG
ATCTGGCGACTGCGCAGGCTGCGTCACGAGCTTCAGGTGCCCCCCCTCCT
CGCCCTGTTCAGCGTCCCCGGCGTGGTCTTGCCCGTGTGCGGTGTCGCTC
CGTCCTGCTGCACGATACCCTCTTCGCCGTTCAGCCACCACATCTCGTTC
TCCACGGCTGGCAAGAAATCTTCGAGGTACTAATTCCGGTTCCATTCGGC
GTCGACGGTGATGTCGACGTCGTACTCCTCGCCCCTAGCGCGTCGCGCGG
TATTCCTTTGTGCCTCCTTGATGCAGACACGCCAAATTCCAATCTTTCCA
TCGAAGTTGTGTGCAGGATAGGGGCGTGAAACGGCGCAGATGAACAACAC
TCCGGGAATGTGATTCTTGTGCTGCACCTTGATCGTGCCCACTTTTTCTT
CCCCTAGGAACATGCGCACCTTTTTCCTGTCACGGATGAGGTAAAACCAC
TCCTCGTCGACGTGAATCGAGTGGAGGCCTGTTTGAACGTTTTGCGATCG
CGGCAAATCTGGTCGAGCATGAAGTCCATTCGATTCTTTTTGTAATCGAA
AGAAAGCGAGGGGGGTGATCCGTCGCTGAACCCTCGTTGCCCCCATGAGA
TTGAGCCAGCGAAAAAGCTCAAGTGCTGTCGACGGTGAGACCTACATCGG
CCCGCTTGGCGGAAAGTTGGTGAAACGTCAGCGCGCGATTGGCAGCGTTG
ATTTCTCGGATGTTGGCCTGCTTCCGCGGCGTAAAGGCCTGAAGGCCGGC
CAAGTCTCCCCTATGTTTTCAGAGAGATTGCATTCCCTTCCTCGAGTTGC
TTTTCACGCGTCCCCACAACCTCCGCGGGTAATCCTCGTTGACCCCGAAT
TCTTCATCCAACCTAGGCCCGACGCCTTGTGTAAGCGTTTCTTTGCCTGG
AGGAAGAGCAACCGCGTATCGCAGAGTAAGCGCGTTGCGACTCTCCTCGC
TCAGCTCGGAATGTTTGCCCCTCCCAGGTGAAGAGTTCCCACCGGCTGAT
GGAAATTCTATCCCAGTGGATGGGCTCTGGGCGCTCGCCATCGGGTCTCC
ACGGACTTTACACGATATAGAGAAGCTTTGTACGCGCTATTGTAATCAGT
CGGAGGGTTTGTAGTAATTGTATGCGCATCTGAGGCTCCGCGGGCAACCG
AAGGTTGTGGGAGTAGTGGGTGACTACAACGTGTTACCGAACCATACAAA
ATGAGCCAAAAACACTGCAAAGTAGCGAAAAGGTCAAACGGGATTATTCT
TGTTTTCGGAACAGAAAAATACAGAAGAAAAATACACAAAATTTTTGTGT
CATCGGAAAAGCGTCCAGGAAACATAGGCGACAAAACGTTTTGAAATCGG
AGATCGTTCCGAGAAGATGTGGAATAATTACATAACAAGCCAGACTTATG
GAACACAGGTAGTGTATCTTGGTTATCCTTTCATTATAGTCGTAGCATGT
CCGCACTCGCGAGGAAGGGCGGAGGTGAGATGGTTGTTTGGGACGAGGGA
TTGAGGTATCCCCTACGGTGCTATTATACCGCAGAACGCCCCCGGGGGTG
AACATTCTTGAAGGTCGATTTTATGTCATGACTAATGCAGATAAAGTCCA
TGTGTATTGGAAAGAGTACGTCGATCGACAATCATCTGGACAAGATCTTT
TTAATGACACACCTTTCATTGTCACTAGCACAGTAATTTATCGAGAAAAT
AGGCACTGAAAAAGTTTACTCCAGGGGCATTTTAACAGTGCCTTATGTTA
CTCGCCTAGCTTGTTGGCCGTGTGCTCGTAGTCCAAGCGTGATGTTTCGC
GATCACTACGCAGGTCGATGATTGTCACCGCCCCCCTTCTTTGCGGCTTT
CGTCTTCTTTGTCGGCGCTTTGTGTTTGGTTTCTCGCGACCAGGTTCAAC
GTGACGCCGGACTCTTTCGCACCCCCTCCAGATCCGATAAAACGACTTTA
TCAACTCCAGTACGGTTCTCTGCGAGCTATGCGCAAAGGTGGGTGGAAGG
TTTGGCCGTTTTGTTCGCTGCGAAAATGACATGGGCATGTTTCATTAGGC
TGGTTTCACGTACCGCATTTAATGTATTGATGAAAGTCACTCAATAATAT
TTATCGCTTACTGATGATCAGCCGTGCAGCCAAAGAATCATGAACAAAGT
AGGCAGGGGTAAATACGAGTGTATGGTTAGGGTAGGGCTAGGATCAAGTA
TTTTCAAACGCTTAATCTTGTTCATGGCTGCAAGGTTATCGCTTGAGGAC
GATGGTGGGAACTTTTGGCCGGCGAGATTGCTTCTTGTCGGTTTTTCGCG
TGCTCGATTAGTGTTACCGGCTTTTGTCACTACTCTGAAGGGCTCTTAAC
ACGCCACGCTGGCCCTATCGCAGCGAGGCATATGACACCCAGAGTATTGT
TTGCTGCGTCAGAGAATCGAATCGTTCGAAGAGACCGCTGAGGGAAGAGT
TACTGAGGTCCATCCGAGGTTGCGAGCAGAGTAGTCACAGGACTGTGCAA
AGGTAGAATGAATAGTGCATATCGTGGACAACGATATCGATTACCGCAGG
TAATGTTACAGAGATTATCCTGTCCCTTCGTACACACACATAGTGTCGTG
GTTCTTGTTTTGCCAGTTGCCATTTTTGTGATATCTGGAGCAGCATCGTG
AGCACGTTTTCGGCGCGTCTTTCGTCCTCCCCGTCGGAGATGATGTTATT
CATGTCTAGGCATTTTCCATTTGTCGTGAATATACGCGAAAAATGAACTG
TTAGATATCTTATGAAGTATGCAAACGAGCAGCATGTAAAACTCCATACA
TAATAGCAAATGTAGGAGCCAATCATTCATTTACAAATGACCCAATTTTT
CTTGTCGCGAAACAGAAAACATAACGCGCTCGCAAACATCTCAACCCCCT
CCCCCGCACTTAACCCCCCGGTCTTGAACAGCGCTATGGAACAACGCTAG
TTGCGAATCAACTGGGCTACAGTTGTGAAGCTCAAGGTTTTGCGGGAACT
GTTTATACCCCAAACGACCTTATATTAGTTCTAAAGTCGACTGTTGCAGC
ATTGCCCTCTTGCCCTAACGTACAACTCTACCCCCTCCGCCTGTTTTCAT
GACTGCCTCCCTCCACATTTCCTCATGGGCAATCGAACAGGGTGTCACCA
ACGGTACCACAGTGCCCCACCGGCCATTCCCGCGCAAACGTCTGCTCAGC
TCCTCATGGGACTAATGGCAGCCAATGCCATGTAAAAAGCTAACCCTGTA
CAAAGTGAAGCTAGGAGGCCAACGTTAGATTTAGATGTCAGCGCTGTGAT
GTACGGCGGATAAATGGCTTGGGCTGGGAAGGAAGCGGAGGAGGGGGAGC
GAGAGGGGGAGGGGGCCGTGGGCGGCGACCCGTCATTTGTGTTTGGCTGT
CGCAGAGATCGGTATTGAGGGCATTTTTATTTTCATTCTTAGTGTTGGCG
CTGTATACACTATACGATAAATAGGTGCCGTGTGTCGTGGTGTCGAACCG
TGAAAAGAAAGCCCTTTGTTCAGAATCAACGGAAAATATGTAACCTTTTC
TCTCTTTTGTCTACATACTCCCCCGTTTGTACCGCGCATTTTTGGTCGGA
ATCTGACGGCATTTACACCTCAGAGGGATTGGCTCAAGGCCTCTCCTCGA
GTTGTTCATAGCGTGGAGCTCGATACGCCAATAGATACTGTGCCGGTCCT
TCAGCGGCTCTGTGTAATAAAACTTTATCTCAAGTTTCCAAATGATAGAT
GAGCTTTAGCGGCTGATTAGAGGAGATAATCTAGGGCACATGATAATGTC
TCTAGTCCTTTCTCGACGGGAACGTTGGTTGAAGAGATGGATGTCTGTTG
GTGCAGTTGTTCTGAATCAGATTATGACCTTCTCTATGGCGGGGTTTGTC
GTGTACGTGACGAACAACCTAGAGTTGAGCGGATCTCGCTCGGAATTCGG
ATCAATGCATAACACAGCGGCAAACATTTGCCTGTGCGTGAAAACTGCGA
CGGGCTCAACATACGATGTACGCTGTTCATGTAAGGTGTAGCAGGAGTCG
ACCGGTCCTTAATTACATGATCGCTTTACCGTCGAGGAACCTGAAATAAC
CCCTTTTTCATTATCCATTGGACGAAAAGGCTTTGAATTGTTTATCAGCC
AGCTCGCCATCGAATTCCTTCCACCTATCATACGTTGTAAACTATAGGCA
GG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4447:1766..11467+

>mRNA_H-paniculata_contig4447.11232.1 ID=mRNA_H-paniculata_contig4447.11232.1|Name=mRNA_H-paniculata_contig4447.11232.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1512bp|location=Sequence derived from alignment at H-paniculata_contig4447:1766..11467+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAATACTCGGCATCTACGGGGAAGGGGGGAGGAGTTGAAAAGAGGGC
GTACCCTCGACTTCCGCTTACTGTTGCTACTCCTGCTGCAACTTCCAGCA
GAAATTCGACTCCAGTGGGCGTACCAACGATCTCTCGCTTGGCCAAGGGC
GGCCGCTTTTCCGTTGCATTGGACAACACTTTTCCGCCACATGGAATACT
CGGCATCTACGGGGAAGGGGGGAGGAGTTGAAAAGAGGGCGTACCCTCGA
CTTCCGCTTACTGTTGCTACTCCTGCTGCAACTTCCAGCAGAAATTCGAC
TCCAGTGGGCGTACCAACGATCTCTCGCTTGGCCAAGGGCGGCCGCTTTT
CCGTTGCATTGGACAACACTTTTCCGCCACGTCGCAGCGGATACCCCGAA
GAAGCCCTCCTTGAGGAACCCGGGTCGACCTGTCGTGCCATGGTCCCGTA
CCGACCCGGATCGAATTGCTCATGGCGGACATGTGGTGATTCACTTGGAG
TTAGTAACAGAGGTCTTCTTCCCCTTTTAGCCCTCCCCCCTTCTCCCAAT
CCGAATTTCCCGGCTGGAACAGCGGAGGGCGGTTCTTGGGTGTCGCGTCG
GGCTGCGCCCTCGAAGCGAGAGATTCCGTCTGAAGTTTTTCCCATAGTGT
TTCAGGTCGCAGCGGATACCCCGAAGAAGCCCTCCTTGAGGAACCCGGGT
CGACCTGTCGTGCCATGGTCCCGTACCGACCCGGATCGAATTGCTCATGG
CGGACATGTGGTGATTCACTTGGAGTTAGTAACAGAGGTCTTCTTCCCCT
TTTAGCCCTCCCCCCTTCTCCCAATCCGAATTTCCCGGCTGGAACAGCGG
AGGGCGGTTCTTGGGTGTCGCGTCGGGCTGCGCCCTCGAAGCGAGAGATT
CCGTCTGAAGTTTTTCCCATAGTGTTTCAGTATATGGACGCTGCTACCCT
GTGCAGCGTGTCGCCGGTTAGTCGGGAGTGGAGGAAGCAAGGAAATGATG
ACCGTTACTGGGGAAGACTCTGCCGTAGCAGTATATGGACGCTGCTACCC
TGTGCAGCGTGTCGCCGGTTAGTCGGGAGTGGAGGAAGCAAGGAAATGAT
GACCGTTACTGGGGAAGACTCTGCCGTAGCAGGTTCAACGTGACGCCGGA
CTCTTTCGCACCCCCTCCAGATCCGATAAAACGACTTTATCAACTCCAGT
ACGGTTCTCTGCGAGCTATGCGCAAAGGTTCAACGTGACGCCGGACTCTT
TCGCACCCCCTCCAGATCCGATAAAACGACTTTATCAACTCCAGTACGGT
TCTCTGCGAGCTATGCGCAAAGGGTGTCACCAACGGTACCACAGTGCCCC
ACCGGCCATTCCCGCGCAAACGTCTGCTCAGCTCCTCATGGGACTAATGG
CAGCCAATGCCATGTAAGGTGTCACCAACGGTACCACAGTGCCCCACCGG
CCATTCCCGCGCAAACGTCTGCTCAGCTCCTCATGGGACTAATGGCAGCC
AATGCCATGTAA
back to top