mRNA_H-paniculata_contig4423.11184.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4423.11184.1
Unique NamemRNA_H-paniculata_contig4423.11184.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4423.11184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4423contigH-paniculata_contig4423:1170..3211 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size1730
Cds size1626
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4423.11184.1prot_H-paniculata_contig4423.11184.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4423 1274..3211 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930334.1494796-UTR-H-paniculata_contig4423:1169..12731622930334.1494796-UTR-H-paniculata_contig4423:1169..1273Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4423 1170..1273 +
1691481246.271669-UTR-H-paniculata_contig4423:1169..12731691481246.271669-UTR-H-paniculata_contig4423:1169..1273Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4423 1170..1273 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930334.162003-CDS-H-paniculata_contig4423:1273..15131622930334.162003-CDS-H-paniculata_contig4423:1273..1513Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4423 1274..1513 +
1691481246.2825005-CDS-H-paniculata_contig4423:1273..15131691481246.2825005-CDS-H-paniculata_contig4423:1273..1513Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4423 1274..1513 +
1622930334.1779006-CDS-H-paniculata_contig4423:1825..32111622930334.1779006-CDS-H-paniculata_contig4423:1825..3211Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4423 1826..3211 +
1691481246.293344-CDS-H-paniculata_contig4423:1825..32111691481246.293344-CDS-H-paniculata_contig4423:1825..3211Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4423 1826..3211 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4423.11184.1

>prot_H-paniculata_contig4423.11184.1 ID=prot_H-paniculata_contig4423.11184.1|Name=mRNA_H-paniculata_contig4423.11184.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=542bp
MRRDMGASRRRCGNAGTGPLLAHAAVAFVLLLLTAGTANAFDDPDLAAAL
AAATAAAAGEDNVATATVAREDKSGVLEEDAGSPDLDSVTLGVSSVNPQA
GAVRPEHEGIARSNQGSEENDAQSSSLSSSNKGMISGDASVVTSRPSDES
VEHSTNERVAFETANVVRADGNNHKMGEPHDRAGSESMRLKDETREDTLS
AGQERKDLDGELLSDKGIQQIETTEGEGRGSGKKHEGGMTEEAGQSEPAG
LPGAVEGDKGLTFHLESTTMMEDAVVDETEDSISESVAAAAAVVDTATSG
MVRVIHYISESRDVVEDGKEETVTLKAADVAEVKRPLDNDSPAAKAAGSS
VDDYQLNGEKAAKEEVVIDAKLVSVARISDSSVDSLALAGERNMAAGVVG
DALQPARNAGQKHQQQPQSLTQTVLDHEGEGNKSKNDSEPLSSSDLDREH
TNQATGDRAGDPGNFESKQQVLLHGNDPRSAATATDIDHIAAHASENART
VVEKPALDGSADPRSYTKNEERQEHQVPTAVPGVGSDGVSRR
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mRNA from alignment at H-paniculata_contig4423:1170..3211+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4423.11184.1 ID=mRNA_H-paniculata_contig4423.11184.1|Name=mRNA_H-paniculata_contig4423.11184.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2042bp|location=Sequence derived from alignment at H-paniculata_contig4423:1170..3211+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTATGACCGTTTTTTCTAGACCGGCAGTGATTTGTTGATGTTCCATTGTG
TCCCACTTCTCAAGGCAGCTAAATGAAGCCAGACTGCTCTTGTCAGAGAC
GTACATGAGGCGTGACATGGGAGCTAGTCGACGGCGGTGCGGAAACGCGG
GAACAGGTCCACTACTTGCTCACGCGGCCGTAGCCTTCGTCTTGTTGCTG
CTGACTGCCGGAACCGCGAATGCTTTCGATGATCCTGACCTTGCAGCGGC
ATTGGCAGCAGCCACGGCAGCAGCGGCAGGAGAGGACAACGTAGCTACGG
CGACGGTCGCGAGGGAAGACAAGAGCGGGGTGCTGGAGGAGGATGTAAGT
AATTCCCTGCTAACTGCGAATATATTGGCCACTGCTCTAACCGTTGGCCA
AAATGATGATAAAGATGGTGTTGACAGCACCGCAGCTACTGCTTGTACTG
CTTGTACTGCTGCTGGTGCTGATACTGATACTTTCGAATCTGCATCAGGC
TCAGCAGAACATGTCCTTGGTGATGACTTGGTTGACATTGACTCCGGGGG
GTCGGGTAATGGCGATATTGAGACGGAGGAAGTTTTTGACGCCATGCTTA
CCGCTGGTTCTGATACCCTCCCTCCTCATGCTGATCCTGGGTCGTCTTTG
GGGCAGGCCGGTTCTCCAGATTTAGATTCAGTAACCCTGGGCGTTTCCAG
TGTCAACCCTCAGGCGGGCGCTGTCCGCCCTGAGCACGAAGGCATTGCAA
GGAGCAACCAAGGGAGCGAAGAAAATGATGCTCAATCGTCGTCATTGTCA
TCATCAAACAAGGGAATGATTAGTGGTGATGCTTCTGTTGTAACATCAAG
GCCAAGTGATGAATCGGTCGAGCACTCGACGAATGAAAGGGTGGCATTCG
AAACAGCGAATGTCGTAAGAGCAGACGGAAATAACCACAAGATGGGCGAG
CCTCACGACAGGGCTGGGTCGGAATCAATGCGGTTGAAAGACGAGACTCG
CGAAGATACACTGTCAGCGGGACAGGAACGAAAAGATCTTGACGGTGAAC
TATTGAGCGACAAGGGGATACAACAAATAGAAACGACGGAGGGAGAAGGA
CGAGGAAGCGGCAAAAAGCACGAGGGCGGTATGACAGAGGAGGCGGGGCA
GTCGGAACCCGCCGGATTACCCGGTGCGGTGGAAGGGGATAAGGGGCTAA
CATTTCACCTGGAGTCAACAACCATGATGGAGGATGCAGTAGTCGACGAA
ACAGAAGACTCTATCTCAGAAAGTGTGGCAGCGGCAGCAGCGGTGGTGGA
CACTGCAACCTCGGGAATGGTTCGCGTAATACATTATATATCGGAAAGCA
GGGATGTGGTAGAGGACGGCAAGGAGGAAACGGTGACGTTGAAAGCCGCC
GACGTAGCTGAAGTCAAACGGCCGTTAGATAATGACTCACCTGCTGCTAA
GGCTGCCGGCTCCTCCGTCGATGACTACCAGCTTAATGGCGAGAAGGCCG
CCAAGGAAGAAGTGGTCATCGATGCCAAGCTCGTTTCGGTTGCACGGATT
TCTGATTCTAGTGTCGACAGCTTGGCGCTTGCCGGAGAAAGAAATATGGC
TGCTGGCGTTGTTGGTGACGCGTTGCAGCCAGCACGAAATGCTGGGCAAA
AACACCAACAGCAGCCACAATCGTTGACGCAAACAGTGCTTGACCACGAG
GGCGAGGGCAACAAGAGCAAAAACGACAGCGAACCGTTATCCTCGTCTGA
TCTCGACCGGGAACACACGAACCAGGCAACTGGCGATCGCGCCGGTGACC
CGGGCAACTTCGAATCCAAACAGCAAGTTCTCTTACACGGGAACGACCCG
CGAAGCGCGGCCACGGCTACGGATATAGACCATATTGCTGCCCATGCTTC
GGAGAATGCCAGAACTGTCGTCGAGAAGCCGGCGTTAGATGGTTCCGCTG
ACCCCAGAAGCTACACTAAGAACGAGGAACGGCAAGAACACCAAGTCCCA
ACAGCGGTGCCGGGGGTGGGAAGCGATGGTGTTAGCCGCAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig4423:1170..3211+

>mRNA_H-paniculata_contig4423.11184.1 ID=mRNA_H-paniculata_contig4423.11184.1|Name=mRNA_H-paniculata_contig4423.11184.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3252bp|location=Sequence derived from alignment at H-paniculata_contig4423:1170..3211+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGCGTGACATGGGAGCTAGTCGACGGCGGTGCGGAAACGCGGGAAC
AGGTCCACTACTTGCTCACGCGGCCGTAGCCTTCGTCTTGTTGCTGCTGA
CTGCCGGAACCGCGAATGCTTTCGATGATCCTGACCTTGCAGCGGCATTG
GCAGCAGCCACGGCAGCAGCGGCAGGAGAGGACAACGTAGCTACGGCGAC
GGTCGCGAGGGAAGACAAGAGCGGGGTGCTGGAGGAGGATATGAGGCGTG
ACATGGGAGCTAGTCGACGGCGGTGCGGAAACGCGGGAACAGGTCCACTA
CTTGCTCACGCGGCCGTAGCCTTCGTCTTGTTGCTGCTGACTGCCGGAAC
CGCGAATGCTTTCGATGATCCTGACCTTGCAGCGGCATTGGCAGCAGCCA
CGGCAGCAGCGGCAGGAGAGGACAACGTAGCTACGGCGACGGTCGCGAGG
GAAGACAAGAGCGGGGTGCTGGAGGAGGATGCCGGTTCTCCAGATTTAGA
TTCAGTAACCCTGGGCGTTTCCAGTGTCAACCCTCAGGCGGGCGCTGTCC
GCCCTGAGCACGAAGGCATTGCAAGGAGCAACCAAGGGAGCGAAGAAAAT
GATGCTCAATCGTCGTCATTGTCATCATCAAACAAGGGAATGATTAGTGG
TGATGCTTCTGTTGTAACATCAAGGCCAAGTGATGAATCGGTCGAGCACT
CGACGAATGAAAGGGTGGCATTCGAAACAGCGAATGTCGTAAGAGCAGAC
GGAAATAACCACAAGATGGGCGAGCCTCACGACAGGGCTGGGTCGGAATC
AATGCGGTTGAAAGACGAGACTCGCGAAGATACACTGTCAGCGGGACAGG
AACGAAAAGATCTTGACGGTGAACTATTGAGCGACAAGGGGATACAACAA
ATAGAAACGACGGAGGGAGAAGGACGAGGAAGCGGCAAAAAGCACGAGGG
CGGTATGACAGAGGAGGCGGGGCAGTCGGAACCCGCCGGATTACCCGGTG
CGGTGGAAGGGGATAAGGGGCTAACATTTCACCTGGAGTCAACAACCATG
ATGGAGGATGCAGTAGTCGACGAAACAGAAGACTCTATCTCAGAAAGTGT
GGCAGCGGCAGCAGCGGTGGTGGACACTGCAACCTCGGGAATGGTTCGCG
TAATACATTATATATCGGAAAGCAGGGATGTGGTAGAGGACGGCAAGGAG
GAAACGGTGACGTTGAAAGCCGCCGACGTAGCTGAAGTCAAACGGCCGTT
AGATAATGACTCACCTGCTGCTAAGGCTGCCGGCTCCTCCGTCGATGACT
ACCAGCTTAATGGCGAGAAGGCCGCCAAGGAAGAAGTGGTCATCGATGCC
AAGCTCGTTTCGGTTGCACGGATTTCTGATTCTAGTGTCGACAGCTTGGC
GCTTGCCGGAGAAAGAAATATGGCTGCTGGCGTTGTTGGTGACGCGTTGC
AGCCAGCACGAAATGCTGGGCAAAAACACCAACAGCAGCCACAATCGTTG
ACGCAAACAGTGCTTGACCACGAGGGCGAGGGCAACAAGAGCAAAAACGA
CAGCGAACCGTTATCCTCGTCTGATCTCGACCGGGAACACACGAACCAGG
CAACTGGCGATCGCGCCGGTGACCCGGGCAACTTCGAATCCAAACAGCAA
GTTCTCTTACACGGGAACGACCCGCGAAGCGCGGCCACGGCTACGGATAT
AGACCATATTGCTGCCCATGCTTCGGAGAATGCCAGAACTGTCGTCGAGA
AGCCGGCGTTAGATGGTTCCGCTGACCCCAGAAGCTACACTAAGAACGAG
GAACGGCAAGAACACCAAGTCCCAACAGCGGTGCCGGGGGTGGGAAGCGA
TGGTGTTAGCCGCAGGGCCGGTTCTCCAGATTTAGATTCAGTAACCCTGG
GCGTTTCCAGTGTCAACCCTCAGGCGGGCGCTGTCCGCCCTGAGCACGAA
GGCATTGCAAGGAGCAACCAAGGGAGCGAAGAAAATGATGCTCAATCGTC
GTCATTGTCATCATCAAACAAGGGAATGATTAGTGGTGATGCTTCTGTTG
TAACATCAAGGCCAAGTGATGAATCGGTCGAGCACTCGACGAATGAAAGG
GTGGCATTCGAAACAGCGAATGTCGTAAGAGCAGACGGAAATAACCACAA
GATGGGCGAGCCTCACGACAGGGCTGGGTCGGAATCAATGCGGTTGAAAG
ACGAGACTCGCGAAGATACACTGTCAGCGGGACAGGAACGAAAAGATCTT
GACGGTGAACTATTGAGCGACAAGGGGATACAACAAATAGAAACGACGGA
GGGAGAAGGACGAGGAAGCGGCAAAAAGCACGAGGGCGGTATGACAGAGG
AGGCGGGGCAGTCGGAACCCGCCGGATTACCCGGTGCGGTGGAAGGGGAT
AAGGGGCTAACATTTCACCTGGAGTCAACAACCATGATGGAGGATGCAGT
AGTCGACGAAACAGAAGACTCTATCTCAGAAAGTGTGGCAGCGGCAGCAG
CGGTGGTGGACACTGCAACCTCGGGAATGGTTCGCGTAATACATTATATA
TCGGAAAGCAGGGATGTGGTAGAGGACGGCAAGGAGGAAACGGTGACGTT
GAAAGCCGCCGACGTAGCTGAAGTCAAACGGCCGTTAGATAATGACTCAC
CTGCTGCTAAGGCTGCCGGCTCCTCCGTCGATGACTACCAGCTTAATGGC
GAGAAGGCCGCCAAGGAAGAAGTGGTCATCGATGCCAAGCTCGTTTCGGT
TGCACGGATTTCTGATTCTAGTGTCGACAGCTTGGCGCTTGCCGGAGAAA
GAAATATGGCTGCTGGCGTTGTTGGTGACGCGTTGCAGCCAGCACGAAAT
GCTGGGCAAAAACACCAACAGCAGCCACAATCGTTGACGCAAACAGTGCT
TGACCACGAGGGCGAGGGCAACAAGAGCAAAAACGACAGCGAACCGTTAT
CCTCGTCTGATCTCGACCGGGAACACACGAACCAGGCAACTGGCGATCGC
GCCGGTGACCCGGGCAACTTCGAATCCAAACAGCAAGTTCTCTTACACGG
GAACGACCCGCGAAGCGCGGCCACGGCTACGGATATAGACCATATTGCTG
CCCATGCTTCGGAGAATGCCAGAACTGTCGTCGAGAAGCCGGCGTTAGAT
GGTTCCGCTGACCCCAGAAGCTACACTAAGAACGAGGAACGGCAAGAACA
CCAAGTCCCAACAGCGGTGCCGGGGGTGGGAAGCGATGGTGTTAGCCGCA
GG
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