prot_H-paniculata_contig4422.11182.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4422.11182.1
Unique Nameprot_H-paniculata_contig4422.11182.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length84
Homology
BLAST of mRNA_H-paniculata_contig4422.11182.1 vs. uniprot
Match: A0A438D5Z5_VITVI (Copia protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438D5Z5_VITVI)

HSP 1 Score: 52.0 bits (123), Expect = 1.400e-6
Identity = 20/61 (32.79%), Postives = 41/61 (67.21%), Query Frame = 0
Query:   24 RSVHIFCDNKEALLLAGQCNYGSRSKHLTIRFVGLRDWINQRQIIFDRFSSKKQLSDISTK 84
            RS+ I+CDN  A+ +A     GSRSKH+ I+++ +R+ + +++++ +  S++  ++D  TK
Sbjct:   39 RSLSIYCDNSAAIFMAKNNKSGSRSKHIDIKYLAIRECVKEKKMVIEHISTELMIADPLTK 99          
BLAST of mRNA_H-paniculata_contig4422.11182.1 vs. uniprot
Match: A0A438FG07_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FG07_VITVI)

HSP 1 Score: 51.6 bits (122), Expect = 1.170e-5
Identity = 24/80 (30.00%), Postives = 49/80 (61.25%), Query Frame = 0
Query:    9 FHLSGILGALGWKNFRSVHI----FCDNKEALLLAGQCNYGSRSKHLTIRFVGLRDWINQRQIIFDRFSSKKQLSDISTK 84
            F L+G  GA+ W++    +I    +CDN  A+ +A     GSRSKH+ I+++ +R+ + +++++ +  S++  ++D  TK
Sbjct:  494 FILAG--GAISWRSSYGFNIPLSIYCDNSVAVFMAKNNKSGSRSKHIDIKYLAIREHVKEKKVVIEHISTELMIADPLTK 571          
BLAST of mRNA_H-paniculata_contig4422.11182.1 vs. uniprot
Match: A0A438J7E3_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438J7E3_VITVI)

HSP 1 Score: 51.6 bits (122), Expect = 1.210e-5
Identity = 20/61 (32.79%), Postives = 40/61 (65.57%), Query Frame = 0
Query:   24 RSVHIFCDNKEALLLAGQCNYGSRSKHLTIRFVGLRDWINQRQIIFDRFSSKKQLSDISTK 84
            R + I+CDN  A+ +A     GSRSKH+ I+++ +R+ + +++++ +  S+K  ++D  TK
Sbjct: 1442 RPLSIYCDNSAAVFMAKNNKSGSRSKHIDIKYLAIRERVKEKKVVIEHISTKLMITDPLTK 1502          
BLAST of mRNA_H-paniculata_contig4422.11182.1 vs. uniprot
Match: A0A438EJF0_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EJF0_VITVI)

HSP 1 Score: 51.2 bits (121), Expect = 1.370e-5
Identity = 23/79 (29.11%), Postives = 46/79 (58.23%), Query Frame = 0
Query:    9 FHLSGILGALGWKNF-------RSVHIFCDNKEALLLAGQCNYGSRSKHLTIRFVGLRDWINQRQIIFDRFSSKKQLSD 80
            F L+G  GA+ W++        +++ I+CDN  A+ LA     GSRSKH+ I+++ +R+ +   ++  +  S++  ++D
Sbjct:  174 FSLAG--GAISWRSLQVVDLISKTLRIYCDNSAAVFLAKNNKSGSRSKHIDIKYLSIREHVKSNKVAIEHISTRLMIAD 250          
BLAST of mRNA_H-paniculata_contig4422.11182.1 vs. uniprot
Match: UPI00192E893C (secreted RxLR effector protein 161-like n=3 Tax=Eucalyptus grandis TaxID=71139 RepID=UPI00192E893C)

HSP 1 Score: 50.8 bits (120), Expect = 1.540e-5
Identity = 20/61 (32.79%), Postives = 39/61 (63.93%), Query Frame = 0
Query:   24 RSVHIFCDNKEALLLAGQCNYGSRSKHLTIRFVGLRDWINQRQIIFDRFSSKKQLSDISTK 84
            R + IFCDN  A+ +A     GSRSKH+ I+++ +R+ + +++++ +  S+   ++D  TK
Sbjct:  148 RPLRIFCDNSAAVFMAKNHKSGSRSKHIDIKYLAIRERVKEKKVVIEHISTGLMIADSLTK 208          
BLAST of mRNA_H-paniculata_contig4422.11182.1 vs. uniprot
Match: A0A438I0F6_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438I0F6_VITVI)

HSP 1 Score: 51.2 bits (121), Expect = 1.600e-5
Identity = 22/83 (26.51%), Postives = 47/83 (56.63%), Query Frame = 0
Query:   16 GALGWKNFRS--------------VHIFCDNKEALLLAGQCNYGSRSKHLTIRFVGLRDWINQRQIIFDRFSSKKQLSDISTK 84
            GA+ W++ +S              + I+CDN  A+ +A     GSRSKH+ I+++ +R+ + +++++ +  S++  ++D  TK
Sbjct:  490 GAISWRSLKSFISGLRVMDSISRPLSIYCDNSVAVFMAKNNKSGSRSKHIDIKYLAIRECVKEKKVVIEHISTELMIADPLTK 572          
BLAST of mRNA_H-paniculata_contig4422.11182.1 vs. uniprot
Match: A0A438J094_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438J094_VITVI)

HSP 1 Score: 49.3 bits (116), Expect = 1.860e-5
Identity = 18/59 (30.51%), Postives = 39/59 (66.10%), Query Frame = 0
Query:   26 VHIFCDNKEALLLAGQCNYGSRSKHLTIRFVGLRDWINQRQIIFDRFSSKKQLSDISTK 84
            + I+CDN  A+ +A     GSRSKH+ I+++ +R+ + +++++ +  S++  ++D  TK
Sbjct:   51 ISIYCDNSTAVFMAKNNKSGSRSKHIDIKYLAIRERVKEKKVVIEHISTELMIADPLTK 109          
BLAST of mRNA_H-paniculata_contig4422.11182.1 vs. uniprot
Match: A0A438CYW8_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CYW8_VITVI)

HSP 1 Score: 50.8 bits (120), Expect = 2.170e-5
Identity = 19/61 (31.15%), Postives = 41/61 (67.21%), Query Frame = 0
Query:   24 RSVHIFCDNKEALLLAGQCNYGSRSKHLTIRFVGLRDWINQRQIIFDRFSSKKQLSDISTK 84
            + + I+CDN  A+ +A     GSRSKH+ I+++ +R+ + ++++I +  S++  ++D+ TK
Sbjct:  462 KPLSIYCDNSVAVFMAKNNKSGSRSKHIDIKYLAIRERVKEKKVIIEHISTELMITDLLTK 522          
BLAST of mRNA_H-paniculata_contig4422.11182.1 vs. uniprot
Match: A0A2N9I6P9_FAGSY (CCHC-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9I6P9_FAGSY)

HSP 1 Score: 50.8 bits (120), Expect = 2.200e-5
Identity = 20/61 (32.79%), Postives = 40/61 (65.57%), Query Frame = 0
Query:   24 RSVHIFCDNKEALLLAGQCNYGSRSKHLTIRFVGLRDWINQRQIIFDRFSSKKQLSDISTK 84
            R + ++CDN  A+ +A     GSRSKH+ I+++ +R+ I +++++ +  S+K  ++D  TK
Sbjct:  584 RPLRMYCDNSAAVFMAKNNKSGSRSKHIDIKYLAIRERIKEKKVVIEHVSTKLMIADPLTK 644          
BLAST of mRNA_H-paniculata_contig4422.11182.1 vs. uniprot
Match: B5U9F7_SOYBN (Gag-protease-integrase-RT-RNaseH polyprotein n=1 Tax=Glycine max TaxID=3847 RepID=B5U9F7_SOYBN)

HSP 1 Score: 50.8 bits (120), Expect = 2.260e-5
Identity = 20/61 (32.79%), Postives = 39/61 (63.93%), Query Frame = 0
Query:   24 RSVHIFCDNKEALLLAGQCNYGSRSKHLTIRFVGLRDWINQRQIIFDRFSSKKQLSDISTK 84
            R + IFCDN  A+ +A     GSRSKH+ I+++ +R+ +  ++++ +  S++  ++D  TK
Sbjct: 1241 RPLRIFCDNSAAVFMAKNNKSGSRSKHIDIKYLAIRERVKDKKVVIEHISTELMIADPLTK 1301          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4422.11182.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A438D5Z5_VITVI1.400e-632.79Copia protein n=1 Tax=Vitis vinifera TaxID=29760 R... [more]
A0A438FG07_VITVI1.170e-530.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A438J7E3_VITVI1.210e-532.79Retrovirus-related Pol polyprotein from transposon... [more]
A0A438EJF0_VITVI1.370e-529.11Retrovirus-related Pol polyprotein from transposon... [more]
UPI00192E893C1.540e-532.79secreted RxLR effector protein 161-like n=3 Tax=Eu... [more]
A0A438I0F6_VITVI1.600e-526.51Retrovirus-related Pol polyprotein from transposon... [more]
A0A438J094_VITVI1.860e-530.51Uncharacterized protein n=1 Tax=Vitis vinifera Tax... [more]
A0A438CYW8_VITVI2.170e-531.15Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N9I6P9_FAGSY2.200e-532.79CCHC-type domain-containing protein n=1 Tax=Fagus ... [more]
B5U9F7_SOYBN2.260e-532.79Gag-protease-integrase-RT-RNaseH polyprotein n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4422contigH-paniculata_contig4422:5..256 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4422.11182.1mRNA_H-paniculata_contig4422.11182.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4422 2..256 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4422.11182.1 ID=prot_H-paniculata_contig4422.11182.1|Name=mRNA_H-paniculata_contig4422.11182.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=84bp
MSTCAKQGFHLSGILGALGWKNFRSVHIFCDNKEALLLAGQCNYGSRSKH
LTIRFVGLRDWINQRQIIFDRFSSKKQLSDISTK
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