mRNA_H-paniculata_contig44123.11166.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig44123.11166.1
Unique NamemRNA_H-paniculata_contig44123.11166.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig44123.11166.1 vs. uniprot
Match: D8LFD9_ECTSI (UBP-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFD9_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 1.670e-17
Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    1 LHCETCRIAHNLWICMVCGHIGCGRYTEEHAARHFHLFRHSY 126
            L CETCRIAHNLWICMVCGHIGCGRYT EHA+RHF L  H+Y
Sbjct:  669 LCCETCRIAHNLWICMVCGHIGCGRYTGEHASRHFRLSGHTY 710
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BLAST of mRNA_H-paniculata_contig44123.11166.1 vs. uniprot
Match: A0A835YX21_9STRA (UBP-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX21_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.420e-13
Identity = 29/40 (72.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    7 CETCRIAHNLWICMVCGHIGCGRYTEEHAARHFHLFRHSY 126
            CE CRIAHNLW+CMVCGHIGCGRYT EHA  H     H+Y
Sbjct:  345 CEACRIAHNLWVCMVCGHIGCGRYTAEHAKAHHAQTGHTY 384
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BLAST of mRNA_H-paniculata_contig44123.11166.1 vs. uniprot
Match: I2CRA4_NANGC (Brca1-associated protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRA4_NANGC)

HSP 1 Score: 69.3 bits (168), Expect = 1.040e-12
Identity = 27/42 (64.29%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 LHCETCRIAHNLWICMVCGHIGCGRYTEEHAARHFHLFRHSY 126
            L C TC I  NLWIC++CGH+GCGRYT EHA RHFH   H +
Sbjct:  224 LTCYTCNIPENLWICLLCGHVGCGRYTAEHAKRHFHCCGHIF 265
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BLAST of mRNA_H-paniculata_contig44123.11166.1 vs. uniprot
Match: W7TMC1_9STRA (Brca1-associated protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TMC1_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.260e-12
Identity = 27/42 (64.29%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 LHCETCRIAHNLWICMVCGHIGCGRYTEEHAARHFHLFRHSY 126
            L C TC I  NLWIC++CGH+GCGRYT EHA RHFH   H +
Sbjct:  587 LTCYTCNIPENLWICLLCGHVGCGRYTAEHAKRHFHCCGHIF 628
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BLAST of mRNA_H-paniculata_contig44123.11166.1 vs. uniprot
Match: A0A061RRD2_9CHLO (BRCA1-associated protein n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RRD2_9CHLO)

HSP 1 Score: 64.7 bits (156), Expect = 5.080e-11
Identity = 25/41 (60.98%), Postives = 28/41 (68.29%), Query Frame = 1 
Query:    4 HCETCRIAHNLWICMVCGHIGCGRYTEEHAARHFHLFRHSY 126
            HC TC    NLWIC++CGH+GCGRY E HAA HF    H Y
Sbjct:  242 HCATCGSRENLWICLICGHVGCGRYMEAHAADHFRESGHCY 282
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BLAST of mRNA_H-paniculata_contig44123.11166.1 vs. uniprot
Match: A0A2G8LIG2_STIJA (Putative BRCA1-associated protein-like n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LIG2_STIJA)

HSP 1 Score: 64.7 bits (156), Expect = 5.350e-11
Identity = 26/40 (65.00%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:    7 CETCRIAHNLWICMVCGHIGCGRYTEEHAARHFHLFRHSY 126
            C  CR   NLWIC+VCGHIGCGRY E HA RHF   +H+Y
Sbjct:  337 CFECRSQENLWICLVCGHIGCGRYVETHAFRHFEETQHTY 376
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BLAST of mRNA_H-paniculata_contig44123.11166.1 vs. uniprot
Match: A0A2G8JIS8_STIJA (Putative BRCA1-associated protein-like n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8JIS8_STIJA)

HSP 1 Score: 64.7 bits (156), Expect = 5.350e-11
Identity = 26/40 (65.00%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:    7 CETCRIAHNLWICMVCGHIGCGRYTEEHAARHFHLFRHSY 126
            C  CR   NLWIC+VCGHIGCGRY E HA RHF   +H+Y
Sbjct:  351 CFECRSQENLWICLVCGHIGCGRYVETHAFRHFEETQHTY 390
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BLAST of mRNA_H-paniculata_contig44123.11166.1 vs. uniprot
Match: A0A8C4WUR0_EPTBU (BRCA1 associated protein n=2 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4WUR0_EPTBU)

HSP 1 Score: 63.9 bits (154), Expect = 1.000e-10
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:    4 HCETCRIAHNLWICMVCGHIGCGRYTEEHAARHFHLFRHSY 126
            HC  C +  NLWIC+VCGHIGCGRY   HA +HF   +H+Y
Sbjct:  322 HCFVCGVQENLWICLVCGHIGCGRYESRHAHQHFEETQHTY 362
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BLAST of mRNA_H-paniculata_contig44123.11166.1 vs. uniprot
Match: A0A1V9Z771_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z771_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.360e-10
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:    7 CETCRIAHNLWICMVCGHIGCGRYTEEHAARHFHLFRHSY 126
            CE C    +LWIC++CGHIGCGRY+ EHA RH+    H+Y
Sbjct: 1056 CEVCETTEHLWICLICGHIGCGRYSNEHAKRHYQETLHTY 1095
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BLAST of mRNA_H-paniculata_contig44123.11166.1 vs. uniprot
Match: UPI001591D6A9 (BRCA1-associated protein-like n=1 Tax=Zootoca vivipara TaxID=8524 RepID=UPI001591D6A9)

HSP 1 Score: 60.8 bits (146), Expect = 2.210e-10
Identity = 22/40 (55.00%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:    7 CETCRIAHNLWICMVCGHIGCGRYTEEHAARHFHLFRHSY 126
            C  C +  NLWIC++CGHIGCGRY   HA +HF   +H+Y
Sbjct:   99 CFECGVQENLWICLICGHIGCGRYVSRHAYKHFEETQHTY 138
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44123.11166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFD9_ECTSI1.670e-1783.33UBP-type domain-containing protein n=2 Tax=Ectocar... [more]
A0A835YX21_9STRA1.420e-1372.50UBP-type domain-containing protein n=1 Tax=Tribone... [more]
I2CRA4_NANGC1.040e-1264.29Brca1-associated protein (Fragment) n=1 Tax=Nannoc... [more]
W7TMC1_9STRA1.260e-1264.29Brca1-associated protein n=1 Tax=Nannochloropsis g... [more]
A0A061RRD2_9CHLO5.080e-1160.98BRCA1-associated protein n=2 Tax=Tetraselmis sp. G... [more]
A0A2G8LIG2_STIJA5.350e-1165.00Putative BRCA1-associated protein-like n=1 Tax=Sti... [more]
A0A2G8JIS8_STIJA5.350e-1165.00Putative BRCA1-associated protein-like n=1 Tax=Sti... [more]
A0A8C4WUR0_EPTBU1.000e-1058.54BRCA1 associated protein n=2 Tax=Eptatretus burger... [more]
A0A1V9Z771_9STRA1.360e-1057.50Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
UPI001591D6A92.210e-1055.00BRCA1-associated protein-like n=1 Tax=Zootoca vivi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig44123contigH-paniculata_contig44123:918..1049 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.0
Seed ortholog evalue2e-14
Seed eggNOG ortholog2880.D8LFD9
KEGG koko:K00413,ko:K10632,ko:K11407
KEGG Pathwayko00190,ko01100,ko02020,ko04014,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,ko05034,ko05165,ko05203,map00190,map01100,map02020,map04014,map04260,map04714,map04932,map05010,map05012,map05016,map05034,map05165,map05203
KEGG ModuleM00151,M00152
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000151,GO:0000165,GO:0003674,GO:0003824,GO:0004842,GO:0005048,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005829,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0008139,GO:0008150,GO:0008152,GO:0008270,GO:0009636,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010646,GO:0010648,GO:0012505,GO:0016020,GO:0016310,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0023014,GO:0023051,GO:0023052,GO:0023057,GO:0031090,GO:0031965,GO:0031967,GO:0031975,GO:0032182,GO:0032446,GO:0032991,GO:0033218,GO:0035556,GO:0036211,GO:0042221,GO:0042277,GO:0042493,GO:0042802,GO:0043130,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045471,GO:0046677,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0061630,GO:0061659,GO:0065007,GO:0070647,GO:0071704,GO:0097305,GO:0140096,GO:1901564,GO:1901700,GO:1902494,GO:1990234
EggNOG free text desc.nuclear localization sequence binding
EggNOG OGsKOG0804@1,KOG0804@2759
EC2.3.2.27,3.5.1.98
COG Functional cat.GO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03019,ko03036,ko04121,ko04131
Exons1
Model size132
Cds size132
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930331.7237945-CDS-H-paniculata_contig44123:917..10491622930331.7237945-CDS-H-paniculata_contig44123:917..1049Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44123 918..1049 -
1691481245.1466794-CDS-H-paniculata_contig44123:917..10491691481245.1466794-CDS-H-paniculata_contig44123:917..1049Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44123 918..1049 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig44123.11166.1prot_H-paniculata_contig44123.11166.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig44123 918..1049 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig44123.11166.1

>prot_H-paniculata_contig44123.11166.1 ID=prot_H-paniculata_contig44123.11166.1|Name=mRNA_H-paniculata_contig44123.11166.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=44bp
LHCETCRIAHNLWICMVCGHIGCGRYTEEHAARHFHLFRHSYR*
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mRNA from alignment at H-paniculata_contig44123:918..1049-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig44123.11166.1 ID=mRNA_H-paniculata_contig44123.11166.1|Name=mRNA_H-paniculata_contig44123.11166.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=132bp|location=Sequence derived from alignment at H-paniculata_contig44123:918..1049- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCACTGCGAAACGTGCCGCATTGCGCACAACTTGTGGATTTGCATGGT
GTGTGGGCACATTGGCTGTGGCCGTTACACCGAAGAGCACGCGGCGCGGC
ACTTCCATCTCTTCCGACACAGTTACAGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig44123:918..1049-

>mRNA_H-paniculata_contig44123.11166.1 ID=mRNA_H-paniculata_contig44123.11166.1|Name=mRNA_H-paniculata_contig44123.11166.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=264bp|location=Sequence derived from alignment at H-paniculata_contig44123:918..1049- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCACTGCGAAACGTGCCGCATTGCGCACAACTTGTGGATTTGCATGGT
GTGTGGGCACATTGGCTGTGGCCGTTACACCGAAGAGCACGCGGCGCGGC
ACTTCCATCTCTTCCGACACAGTTACAGGTGACTTCACTGCGAAACGTGC
CGCATTGCGCACAACTTGTGGATTTGCATGGTGTGTGGGCACATTGGCTG
TGGCCGTTACACCGAAGAGCACGCGGCGCGGCACTTCCATCTCTTCCGAC
ACAGTTACAGGTGA
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