mRNA_H-paniculata_contig4410.11161.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4410.11161.1
Unique NamemRNA_H-paniculata_contig4410.11161.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4410.11161.1 vs. uniprot
Match: D7FTH4_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTH4_ECTSI)

HSP 1 Score: 434 bits (1117), Expect = 9.180e-134
Identity = 265/479 (55.32%), Postives = 316/479 (65.97%), Query Frame = 1 
Query:    1 RIKMHRKWAVIKFTSKHTAGTADISNFAVRGPPGVSMRLSLQSILSS-------APLPPPPSPLFERPSGLRALNDSTVFDAGMLSTDGGGSSXXXXXXXGLWGEGVRLERKRKEAERGKEGPQEWELVMEATFIECRHMIDYANLSVAGGRCQACLLNLDCTWCGGEHGRGCIPAAEGPIRLDDLAAGGRRQDG--SCQVGNCCPGNCNGVGRCDFFSATCSCPWLYAGSSCGELSTRGAVALSMSLSALALLMLSLACGRSSRRKQMEAVVGTLQELKRGLLSDADGSVGDDDCSVLSGRSGIGGRIALSMGARGQLAGVGAGGXXXXXXXXXXXVGG-----------------------------DVMVAFSELELSHKIGSGATGSVWRGSWRGAAVAVKVIRKPFHQAVELTGRDLEIFKREAYLMTRLRHPNIVLIMGITFAPAGHRITLDGQ--EPISISRRRQLGFEDFG 1317
            R+KM+RKWA+++F +   A   D  + +VRGPPGVSM L++Q++          AP PP P PL  +P    +L D                        G WG+    ER+R     G  G Q  ELV++A FIECR M+ YAN++ AGG CQACLLN++C+WCG + G GC+P  E P++      GGRR D   SCQ G+CCP  CNGVG CDFFSATCSC WLYAGSSC ++ST+GAVALS+SLSAL L+MLSLACGRSS+RKQ+EAV+GTLQELKRGLLSD DGS+GDDD + L+   G   R+A S+G RGQL   G G XXXXXXXXXXX                                DVMV+F ELEL   +GSGA G+VWRGSWRGAAVAVKVIR+PFHQA+EL G DLE FKREAYLMTRLRHPNIVLIMG+ FAP GHRITLDG     +S+SRRR+LGFE  G
Sbjct: 1410 RMKMNRKWAIVRFGTLDAARNVDTGSLSVRGPPGVSMALAMQNVTLKGGGGGWHAP-PPMPDPL--QPRDPLSLQDHEE--------------------RGGWGDAKWTERERSY---GDVGDQRLELVLQAVFIECRSMLLYANVTTAGGPCQACLLNMECSWCGDQDGMGCVPVEERPVKR-----GGRRGDAALSCQTGSCCPLGCNGVGECDFFSATCSCRWLYAGSSCADVSTKGAVALSLSLSALLLVMLSLACGRSSQRKQVEAVMGTLQELKRGLLSDTDGSIGDDDVN-LAPFGGKSNRMAFSIGGRGQLP-TGRGXXXXXXXXXXXXXXXXXXXXXGLSYQHMWPRDYIQDLQQNLALRDVMVSFGELELGEMVGSGAAGTVWRGSWRGAAVAVKVIRRPFHQAMELAGGDLETFKREAYLMTRLRHPNIVLIMGVAFAPPGHRITLDGDGTASMSVSRRRELGFEGLG 1855
[Close]
BLAST of mRNA_H-paniculata_contig4410.11161.1 vs. uniprot
Match: A0A6H5K8N7_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8N7_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 3.170e-46
Identity = 85/108 (78.70%), Postives = 93/108 (86.11%), Query Frame = 1 
Query: 1000 MVAFSELELSHKIGSGATGSVWRGSWRGAAVAVKVIRKPFHQAVELTGRDLEIFKREAYLMTRLRHPNIVLIMGITFAPAGHRITLDGQ--EPISISRRRQLGFEDFG 1317
            MV+F ELEL   +GSGA G+VWRGSWRGAAVAVKVIR+PFHQAVEL G DLE FKREAYLMTRLRHPNIVLIMG+ FAP GHRITLDG     +S+SRRR+LGFEDFG
Sbjct:    1 MVSFGELELGEMVGSGAAGTVWRGSWRGAAVAVKVIRRPFHQAVELAGGDLETFKREAYLMTRLRHPNIVLIMGVAFAPPGHRITLDGDGTASMSVSRRRELGFEDFG 108
[Close]
BLAST of mRNA_H-paniculata_contig4410.11161.1 vs. uniprot
Match: A0A7S2JXS2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JXS2_9STRA)

HSP 1 Score: 121 bits (303), Expect = 1.130e-25
Identity = 90/283 (31.80%), Postives = 140/283 (49.47%), Query Frame = 1 
Query:  382 IECRHMIDYANLSVAGGRCQACLLNL-DCTWCGGEHGRGCIPAAEGPIRLDDLAAGGRRQDGSCQVGNCCPGNCNGVGRCDFFSATCSCPWLYAGSSCGELSTRGAVALSMSLSALALLMLSLACGRSSRRKQMEAVVGTLQELKRGLL-SDADGSVGDDDCSVLSGRSGIGGRIALSMGARGQLAGVGAGGXXXXXXXXXXXVGGDVMVAFSELELSHKIGSGATGSVWRGSWRGAAVAVKVIRKPFHQAVELTGRDLEIFKREAYLMTRLRHPNIVLIMGI 1224
            I C  +++Y+ L   G  C  CL +  +CTW        C+  +  P   D              + +CCP +CN  G C+  S  C C W + G SC  +S  G   +   +SA  +L+++L   + +RR +  AV  TL+EL+R LL SD   SV  +D +  +  S    R ++S   + +L                     DV V   ++++  KIG GA G V+ G++R   VA+K+IR+     ++++  ++E FKREAY+M+RLRHPNI L MGI
Sbjct: 1278 IACESVLEYSTLGSLGESCTTCLSSSSECTWLQST----CVTPSS-PSERD--------------LRSCCPDSCNNRGTCNLSSGECYCGWFFVGDSCSSISDAGLYVVIGVVSAALILIMTLVYNKYNRRSRKLAVTTTLEELRRELLESDELLSVTSEDVNDYNDSSPH--RNSVSPDRQRRLVS-----PEYIQDIQKQLFMKDVSVQPQDVQIGRKIGDGAFGDVYVGNYRETTVAIKMIRQIV--LLDMSDEEVESFKREAYIMSRLRHPNIALFMGI 1532
[Close]
BLAST of mRNA_H-paniculata_contig4410.11161.1 vs. uniprot
Match: A0A7S1Z0F9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z0F9_9STRA)

HSP 1 Score: 115 bits (288), Expect = 6.880e-24
Identity = 93/299 (31.10%), Postives = 141/299 (47.16%), Query Frame = 1 
Query:  382 IECRHMIDYA-NLSVAGGRCQACLLN-LDCTW------CGGEHGRGCIPAAEGPIRLDDLAAGGRRQDGSCQVGNCCPGNCNGVGRCDFFSA--TCSCPWLYAGSSCGELSTRGAVALSMSLSALALLMLSLACGRSSRRKQMEAVVGTLQELKRGLLSDAD-GSVGDDDCSVLSGRSGIGGRIALSMGARGQLAGVGAGGXXXXXXXXXXXVGGDVMVAFSELELSHK--IGSGATGSVWRGSWRGAAVAVKVIRKPFHQAVELTGRDLEIFKREAYLMTRLRHPNIVLIMGITFAPA 1239
            I C  +I++A N+     +CQ C+ +   C W      C G H             L + +A    +  S +  NCCP  C   G C       +CSC W + G SC  +S  G + +  +  A +L +  +AC   +RR +  AV  TL++L++GLL   D    G  + + LSGR+       +S G    L                  +  D  V   E+++     IG GA G V++G WRG+ VA+K++R+     V +    LE FKREA++M+RLRHPNI L+MGI+  P+
Sbjct:  293 IACSRLIEFAENVGGEQSQCQLCIQSGAGCAWDNTLHSCVGHH-------------LIEASANSEIRRYSIE--NCCPLTCKERGSCIIAEGAPSCSCFWFFTGKSCDSISVIGTMIIVSASVAASLFVSLIACFVLTRRSRSHAVHSTLEQLRQGLLDAVDIEHTGYSEENALSGRN-----EDISQGYIKSL--------------HEQLLLKDASVPMDEIQIDADAIIGKGAFGLVYKGGWRGSTVAIKMVRREV--VVGMGAESLESFKREAFIMSRLRHPNIALLMGISLPPS 555
[Close]
BLAST of mRNA_H-paniculata_contig4410.11161.1 vs. uniprot
Match: A0A7S4V0N7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4V0N7_9STRA)

HSP 1 Score: 115 bits (288), Expect = 9.220e-24
Identity = 93/299 (31.10%), Postives = 141/299 (47.16%), Query Frame = 1 
Query:  382 IECRHMIDYA-NLSVAGGRCQACLLN-LDCTW------CGGEHGRGCIPAAEGPIRLDDLAAGGRRQDGSCQVGNCCPGNCNGVGRCDFFSA--TCSCPWLYAGSSCGELSTRGAVALSMSLSALALLMLSLACGRSSRRKQMEAVVGTLQELKRGLLSDAD-GSVGDDDCSVLSGRSGIGGRIALSMGARGQLAGVGAGGXXXXXXXXXXXVGGDVMVAFSELELSHK--IGSGATGSVWRGSWRGAAVAVKVIRKPFHQAVELTGRDLEIFKREAYLMTRLRHPNIVLIMGITFAPA 1239
            I C  +I++A N+     +CQ C+ +   C W      C G H             L + +A    +  S +  NCCP  C   G C       +CSC W + G SC  +S  G + +  +  A +L +  +AC   +RR +  AV  TL++L++GLL   D    G  + + LSGR+       +S G    L                  +  D  V   E+++     IG GA G V++G WRG+ VA+K++R+     V +    LE FKREA++M+RLRHPNI L+MGI+  P+
Sbjct: 1129 IACSRLIEFAENVGGEQSQCQLCIQSGAGCAWDNTLHSCVGHH-------------LIEASANSEIRRYSIE--NCCPLTCKERGSCIIAEGAPSCSCFWFFTGKSCDSISVIGTMIIVSASVAASLFVSLIACFVLTRRSRSHAVHSTLEQLRQGLLDAVDIEHTGYSEENALSGRN-----EDISQGYIKSL--------------HEQLLLKDASVPMDEIQIDADAIIGKGAFGLVYKGGWRGSTVAIKMVRREV--VVGMGAESLESFKREAFIMSRLRHPNIALLMGISLPPS 1391
[Close]
BLAST of mRNA_H-paniculata_contig4410.11161.1 vs. uniprot
Match: A0A7S2RKW5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RKW5_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.870e-13
Identity = 45/87 (51.72%), Postives = 63/87 (72.41%), Query Frame = 1 
Query:  994 DVMVAFSELELSHKIGSGATGSVWRGSWRGAAVAVKVIRKPFHQAVELTGRDLEIFKREAYLMTRLRHPNIVLIMGITFAPAG-HRI 1251
            DV+V F +L++  +IG GA G V+  ++R A VA+K+I+ P  + +EL   +LE F+ EAYLM+RLRHPN+VLIMG+T   AG HRI
Sbjct:   47 DVLVPFEQLQVQRRIGEGAIGVVYLATFRSAKVALKLIKTP--EYMELDEEELERFRLEAYLMSRLRHPNLVLIMGVTRFYAGQHRI 131
[Close]
BLAST of mRNA_H-paniculata_contig4410.11161.1 vs. uniprot
Match: A0A7S0C4K0_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C4K0_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 2.690e-12
Identity = 40/86 (46.51%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:  994 DVMVAFSELELSHK--IGSGATGSVWRGSWRGAAVAVKVIRKPFHQAVELTGRDLEIFKREAYLMTRLRHPNIVLIMGITFAPAGH 1245
            DV V   EL+ S +  IG GA G V++G+WRG++VA+K+IR+  +  + +   +L  FKREA++M+RLRHPNI L+MGI+ + + H
Sbjct:   19 DVSVPLEELQFSEENVIGDGAFGVVYQGTWRGSSVAIKMIRR--NVLLGMGEEELSNFKREAFIMSRLRHPNIALLMGISISDSSH 102
[Close]
BLAST of mRNA_H-paniculata_contig4410.11161.1 vs. uniprot
Match: A0A6H5K5Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5Q8_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 3.880e-12
Identity = 57/155 (36.77%), Postives = 79/155 (50.97%), Query Frame = 1 
Query:    1 RIKMHRKWAVIKFTSKHTAGTADISNFAVRGPPGVSMRLSLQSILSSA------PLPPPPSPLFER-PSGLRALNDSTVFDAGMLSTDGGGSSXXXXXXXGLWGEGVRLERKRKEAERGKEGPQEWELVMEATFIECRHMIDYANLSVAGGRCQA 444
            R+KM+RKWA+++F +   A   D  + +VRGPPGVSM L++Q++            PP P+PL  R P  L+   +  +F AG    D              W E        +E   G  G Q  EL ++A FIECR M+ YAN++ AGG CQA
Sbjct:  890 RMKMNRKWAIVRFGTLDAARNVDTGSLSVRGPPGVSMALAMQNVTLKGGGGGWHDPPPMPAPLQPRDPPSLQDDEEHLLF-AGSGQGDA------------KWTE--------RELRYGDLGDQRLELFLQAVFIECRSMLLYANVTTAGGPCQA 1023
[Close]
BLAST of mRNA_H-paniculata_contig4410.11161.1 vs. uniprot
Match: A0A7S2MHG9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MHG9_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 8.680e-12
Identity = 38/84 (45.24%), Postives = 54/84 (64.29%), Query Frame = 1 
Query:  994 DVMVAFSELELSHK--IGSGATGSVWRGSWRGAAVAVKVIRKPFHQAVELTGRDLEIFKREAYLMTRLRHPNIVLIMGITFAPA 1239
            D  V   E+ +     IG GA G V++G WRG+ VA+K++R+     V +    LE FKREA++M+RLRHPNI L+MGI+  P+
Sbjct:   20 DASVPMEEIIIEEDAIIGKGAFGLVYKGLWRGSPVAIKMVRREV--VVAMGEESLESFKREAFIMSRLRHPNIALLMGISLPPS 101
[Close]
BLAST of mRNA_H-paniculata_contig4410.11161.1 vs. uniprot
Match: Y9955_DICDI (Probable serine/threonine-protein kinase DDB_G0267514 n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Y9955_DICDI)

HSP 1 Score: 72.0 bits (175), Expect = 1.040e-9
Identity = 35/81 (43.21%), Postives = 56/81 (69.14%), Query Frame = 1 
Query:  994 DVMVAFSELELSHKIGSGATGSVWRGSWRGAAVAVKVIRKPFHQAVELTGRDLEIFKREAYLMTRLRHPNIVLIMGITFAP 1236
            D+ ++FSEL++S K+G G  G V++G WRG++VA+K I+       ++  + LE F++E  +++RLRHPNIVL+M    AP
Sbjct:  654 DIEISFSELKISSKLGEGTFGVVYKGLWRGSSVAIKQIKIN----EDVNNQVLEEFRKELTILSRLRHPNIVLLMAACTAP 730
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4410.11161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTH4_ECTSI9.180e-13455.32Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5K8N7_9PHAE3.170e-4678.70Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A7S2JXS2_9STRA1.130e-2531.80Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S1Z0F9_9STRA6.880e-2431.10Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4V0N7_9STRA9.220e-2431.10Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2RKW5_9STRA1.870e-1351.72Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S0C4K0_9STRA2.690e-1246.51Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A6H5K5Q8_9PHAE3.880e-1236.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2MHG9_9STRA8.680e-1245.24Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
Y9955_DICDI1.040e-943.21Probable serine/threonine-protein kinase DDB_G0267... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4410contigH-paniculata_contig4410:1396..15688 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score433.3
Seed ortholog evalue1.3e-118
Seed eggNOG ortholog2880.D7FTH4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons9
Model size1317
Cds size1308
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4410.11161.1prot_H-paniculata_contig4410.11161.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4410 1405..15688 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930331.1832755-UTR-H-paniculata_contig4410:1395..14041622930331.1832755-UTR-H-paniculata_contig4410:1395..1404Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4410 1396..1404 +
1691481244.9549665-UTR-H-paniculata_contig4410:1395..14041691481244.9549665-UTR-H-paniculata_contig4410:1395..1404Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4410 1396..1404 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930331.2019691-CDS-H-paniculata_contig4410:1404..18361622930331.2019691-CDS-H-paniculata_contig4410:1404..1836Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4410 1405..1836 +
1691481244.9712343-CDS-H-paniculata_contig4410:1404..18361691481244.9712343-CDS-H-paniculata_contig4410:1404..1836Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4410 1405..1836 +
1622930331.222019-CDS-H-paniculata_contig4410:7785..79171622930331.222019-CDS-H-paniculata_contig4410:7785..7917Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4410 7786..7917 +
1691481244.979936-CDS-H-paniculata_contig4410:7785..79171691481244.979936-CDS-H-paniculata_contig4410:7785..7917Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4410 7786..7917 +
1622930331.2408257-CDS-H-paniculata_contig4410:9200..92881622930331.2408257-CDS-H-paniculata_contig4410:9200..9288Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4410 9201..9288 +
1691481244.988997-CDS-H-paniculata_contig4410:9200..92881691481244.988997-CDS-H-paniculata_contig4410:9200..9288Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4410 9201..9288 +
1622930331.2613256-CDS-H-paniculata_contig4410:10175..102781622930331.2613256-CDS-H-paniculata_contig4410:10175..10278Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4410 10176..10278 +
1691481244.9984195-CDS-H-paniculata_contig4410:10175..102781691481244.9984195-CDS-H-paniculata_contig4410:10175..10278Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4410 10176..10278 +
1622930331.2845936-CDS-H-paniculata_contig4410:10633..107081622930331.2845936-CDS-H-paniculata_contig4410:10633..10708Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4410 10634..10708 +
1691481245.0086684-CDS-H-paniculata_contig4410:10633..107081691481245.0086684-CDS-H-paniculata_contig4410:10633..10708Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4410 10634..10708 +
1622930331.3067503-CDS-H-paniculata_contig4410:11508..116611622930331.3067503-CDS-H-paniculata_contig4410:11508..11661Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4410 11509..11661 +
1691481245.0194097-CDS-H-paniculata_contig4410:11508..116611691481245.0194097-CDS-H-paniculata_contig4410:11508..11661Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4410 11509..11661 +
1622930331.3264294-CDS-H-paniculata_contig4410:12004..121131622930331.3264294-CDS-H-paniculata_contig4410:12004..12113Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4410 12005..12113 +
1691481245.0297344-CDS-H-paniculata_contig4410:12004..121131691481245.0297344-CDS-H-paniculata_contig4410:12004..12113Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4410 12005..12113 +
1622930331.3407211-CDS-H-paniculata_contig4410:12929..130151622930331.3407211-CDS-H-paniculata_contig4410:12929..13015Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4410 12930..13015 +
1691481245.0401423-CDS-H-paniculata_contig4410:12929..130151691481245.0401423-CDS-H-paniculata_contig4410:12929..13015Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4410 12930..13015 +
1622930331.3628733-CDS-H-paniculata_contig4410:15558..156881622930331.3628733-CDS-H-paniculata_contig4410:15558..15688Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4410 15559..15688 +
1691481245.0505002-CDS-H-paniculata_contig4410:15558..156881691481245.0505002-CDS-H-paniculata_contig4410:15558..15688Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4410 15559..15688 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4410.11161.1

>prot_H-paniculata_contig4410.11161.1 ID=prot_H-paniculata_contig4410.11161.1|Name=mRNA_H-paniculata_contig4410.11161.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=436bp
MHRKWAVIKFTSKHTAGTADISNFAVRGPPGVSMRLSLQSILSSAPLPPP
PSPLFERPSGLRALNDSTVFDAGMLSTDGGGSSGGHDGGGGLWGEGVRLE
RKRKEAERGKEGPQEWELVMEATFIECRHMIDYANLSVAGGRCQACLLNL
DCTWCGGEHGRGCIPAAEGPIRLDDLAAGGRRQDGSCQVGNCCPGNCNGV
GRCDFFSATCSCPWLYAGSSCGELSTRGAVALSMSLSALALLMLSLACGR
SSRRKQMEAVVGTLQELKRGLLSDADGSVGDDDCSVLSGRSGIGGRIALS
MGARGQLAGVGAGGGGRGGGVASGGVGGDVMVAFSELELSHKIGSGATGS
VWRGSWRGAAVAVKVIRKPFHQAVELTGRDLEIFKREAYLMTRLRHPNIV
LIMGITFAPAGHRITLDGQEPISISRRRQLGFEDFG
back to top

mRNA from alignment at H-paniculata_contig4410:1396..15688+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4410.11161.1 ID=mRNA_H-paniculata_contig4410.11161.1|Name=mRNA_H-paniculata_contig4410.11161.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=14293bp|location=Sequence derived from alignment at H-paniculata_contig4410:1396..15688+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAATAAAGATGCATCGAAAATGGGCGGTAATCAAGTTCACCTCCAAACA
CACGGCCGGGACGGCGGATATCTCAAACTTCGCTGTGCGCGGCCCGCCTG
GAGTATCCATGCGTTTATCTCTCCAGTCCATCCTTTCGTCGGCGCCTCTA
CCGCCGCCACCGTCGCCGCTCTTCGAGCGGCCAAGTGGACTACGGGCACT
CAACGACAGCACTGTCTTTGACGCGGGAATGCTATCGACTGACGGCGGCG
GCAGCAGCGGCGGCCACGATGGGGGAGGGGGGTTGTGGGGAGAAGGTGTG
AGGTTGGAGAGGAAGAGGAAGGAAGCGGAGAGGGGGAAGGAGGGCCCGCA
GGAGTGGGAGTTGGTGATGGAGGCGACGTTTATCGAGTGCCGGCATATGA
TTGACTACGCGAATCTGTCCGTTGCTGGTGGGCGGTGTCAGGTGGGGGTT
TGTTGGTATTACTACAGGAGAAGCAAAAGCAAAAGCAAGAGCAAAAGCAA
AAGCAAAAACATTTTTTTTTGCTTTCAAACTCGTTTAAATGGAAGTGATG
ATGGGTCGGTCTCGTTTCGATGGCTGGTTTTTTGTTTTGATGAGTTGTAC
AGTGTATATATTTCCATGGTGGCTGACAACATGTAGAGAAAATGTTTTTT
AAGAACATTTTTGTCACGAATGCTCTTTTTCATCAACAATGACGGAATTG
TAATTTTTGATAAACTGAAAGGAGTTCAAATCGACCGAGGGAGAAAGAAG
AGAGAAACAACATATATATTTAAGTTCAGATTCAGATTCAGATTTAGATT
TAGATTTAGATTTAGATTTAGATAAAGATTCAGATAAAGATGGAGAGAGC
TCTATGTATGTACTACCGGTTTTAGTAGTGCAGCTGTTCAGGTTTTTGCC
GTACCAACACTTCGCTTCACACCCTCTTCAGCGCCTGGCTGCCCATCTCA
CACTCTGTCCTGGTGCAGCACTTCCGCACGTATGCACGCTGTGTCTGATC
CAGCATGTATTCTCTGTGTGTGAACGACAGCCTCTATGATAGCCGCCATG
ATGAAAGAACGCAAGACAAACGTGGAAAATATGTTCATTGGACTGCGTGT
TCATGGTTTTAGCGTTGAGTTGTTTTTTGGTGGACACCCTGTCCAACCTT
GTCTTCACACCCTCTTGAGTTCAAGGCTGCCTCTCTCGCCCTGTGCCCTG
GGTAGCACCTCCAACCGTACAAACGCGCTGTTCCTACTCGTGTGTATGAT
GCAAGGCTCTATGACAGCCGTCATGACGAAGGAGTGCAAGAAAACTTGAG
AAAGATTTTACTGTCTGGACTTTCTCTCTCTCTCTCTCTGTGGACCTGCC
CTGCTGTGTGACCGCGGCTGCCTGTCGTTGTTCCTATATGCACTGCACCG
TACTGAGCTGGCGCTTTGTCTGTCTGAGCTGTCTTTTGGACTGGACGTGA
TGGCGATGAAGAGCTGACCGTTTAGAGCTTTTTTTTTTTATTTCTAAATT
TTCTTGAGCTGAGACTACGTTGTTCGGCTGTTTTACCATGGAAAATCGTC
TTTTAGATTCCGCATTTTGAAATTACTTGAATTAGATATCGAAAAAGAGT
TCCGAAACGACAATGACCTTAACCTGTTGTTTTATTACAATGATAGCATT
TTTTTTTTTTTTTCGTTTTGTTTTGTTTTTCAAATACTTTTGTCACTCTC
CCTCCAGCGTCATATATCCACGCACCTAGCCCTCCCTCGCGTAGCAATAC
ATGTAACATAGAGTGGAACAGGTTGATGTTAATTGCGTTGCAAAGGTCGT
CACAGCACAGTAGCACTACCAGCAGGATGGTCTTGATTTTCAGTATGATG
GACTTCAAAATACCAGATATTTCTTTTCTATATTCCCATTTTTTTTTTAT
CAAATTCAATATACTGAAAATCGATAGCACTACACTGGGCATGAACTGGA
TGATGTTATCATATGCTTTTGATTTGAATATTAAAAAAAAAAACATAAAA
AATGGGTGATTCTTCTCCTCCTCCCTTGTGCCACATGTAAAGTCGATGCC
GAAGTTTTTTTTGCAAGGACACTCGAAACAATCTCCCATTTTTTTACGTT
ATTTTTTTTTTTGTGATTAGAATTCTACATGTTTTTTTTTTGGAGTTGAT
TCCGAAAAGTTCAAGGAGATTGGTGTTGTGGAAAAACATGATGATATTCA
CAAAATTGCGAATAATAATAAACGTCGTTATTCTCGTTTATGGGTTCGTA
ATTACAACCACAAATTTCATTTTTAATTTGTTTTATAATGCGTGCAACTA
CTACGTGTTTTGTTACTAGTTTAATGTTCTTTTTTGGCGTTCGGGGGAGT
TGTTTTAAATCGGACTAATATCTTAGCAATCTTAATGTCTTTAGAAATTG
CTCTTTTTTCTGTACGTTTAAATTTTCTTATTTCTTCTGTTCATCTTGAT
GATGTTATGGGTCTTATCATTCAGTACACGCGCGGCGCAAAACAAAATTG
TGGGCCGGAAAAATGTTCATATTTTAGCTCTTTTCGTCTTTTCCAATGGA
CAAATGTGAACACCCCCCCCCTCCCAAAAAAAACCCCCCGAAAAAAACGT
GAAAATGGTACGAAGTAAGCTCACCATGAGCGACCGTTAATCCTGATACA
CAAATTGGAATGAACTATGGAAAAGCGTACATGAGTCTTGTTCAGATTTT
AGCTTTTTCCAACGGTTCCAACAATGGCCTCTAAATAGGGAGGGCTTTTC
ACGTGATCGGCTGGAAATCAGACATGACCGACCGCGAAGCGATTTGTAAA
AACAGGACATCTCATATAATCCTACCACGAACCGGTTCCTGTCCCGGCCG
CGTGAACACCTCATGTGCGAAAGAAATCTGGTCTCGCGAAAAGCGTCGAA
TATTAAATATTTGGCTAGTTGACAATAACTACGCAGTTGTTCACAGGACC
GACTTTGTCGGATTTTGCTCACTGCTACAACCGGATTGCGGTAGGTTTTT
GTCATACACTAAATTTCTATAACCGGTTCCTTCGCGATCCGTTGTGTCTG
ATTCCATCCGATCCGGGGTAAAAGGTTTGTCGGAAATTCCATCGCTAGAA
CCGGTTTGCGGTAGGTTTTTGTCATACACTAAATTTCTATAACCGTTTCC
TTCGCGATCCGTTGTGTCTGATTCCATCCGATCGGGGGTAAAAGGTTTGT
CGGATTTTTCCATTGCTAGAACCGGTTTGCGGTAGGTTTTTGTCATACAC
TAAATTTCTATAACCGTTTCCTTGGCGATCCGTTGTGTCTGATTCAATCC
GAGCTGGGGTAAAAGGTTTGTCGGATTTTTCCATCGCTAGAACCGGTTTG
CGGTTGGTCATGTCTAATTTCCAGTCAGTCATGTGAAAGACCTTGCTGAA
AGTTTTAGATCTGGAGATCTGACTTGCCGAACTCAACCGGCTTTACGTTT
ATGACATAGAGGAAGTAGATACTTGGCAGGTTCAATTTAACTCGTGGTGC
TTTAGACTCTTATCAGACGTAAACTCAATGATGTCATGCCTTGATTTTAA
TACATGAATATGTGAACACGGAGCGAAACAGATTGAGGATGTTGATTTGA
CTTGCAGAGATCCGCACAGTACAATACTGCCCGTCTACTAGACTCAAAAT
TCAGTTTAATCATGGACTTGATGAAGAAGATTGGTGACCAGAAAATATCG
GATATCCCCTCCCCTTGAACGTAACGCCTCCCTCCTCCTCTCGCTGCTAT
TTATATCAGAAGTGAGTTCAATACAATATACTAAATCAAGACCACTGTAT
TGGGTACTTGTTGGTAATGGTACCGTAATGTGACGATCTTTGGTGATTTA
TGACCCGGGGATAATCACGGCATCAGCATGGGATTATCGTTTTTCTTTTT
TATTAACCTCCACCAGTATGCGTCGATGACTGGGAGCTTAGCGTACCACG
TGACGGGAACTTGCTTTGTATCATAATAAGCAAGGCTTTTTACATAACGG
GCAAAATCTGATGGAACCGATCGCGAACCGGCTTGAATCTGACAGAACCG
ATCGCGAACCGGCTTGAATCTGACAGAACCGATCGCGAACCGGCTTGAAT
CTGATGGAACCGATCGCTGACCGACTTGAATCTGACAGAACGGATCGCCG
ACCGGCTTGAATCACACAGAACTGACCGCGAACCGGTTGTACTAACGAAA
AATATGACAGAACCGACGACCGATCAGACTGAAATCTGATAGAACCAACC
GCGAACCGGTTGTATGATAGATAATGTTACAGAATCTTGCCCAGAATCGG
TTCTGGTGTTGGTTCTGGTCACGCGTAAAAGTCGTGTGTGATTTTCCGGT
CATGTATAAACGTGCCGATCATTCCGCCCGGATATGCACTTCCCGGTTGT
GCTTCAAACGAAAGTCCGGCAAAACCCTACCGAGAACCGGTTCTGGTTCT
GGTCGCGCGTAAAAAGTCATGTGTAATTTCCCGGTCGTGTATAAACGTGC
CGATCATGTGTATTTCCGGCCGTATATATACTTCCCGGTTTCGTAGTAGA
AAAAAGAAGGAATCCATCTGTATTTTTTCTCTAGCTTCCAAACGTCGCTG
TGGCCGCTAACGTGTTGCCCGTTGCTGCCAGAGCTCGACGAGCCTCCGTC
GCCATTCATCGTGAAATACTGATTATGCGGCGCTGCTTCGGTGGTTGGTT
GGCTGTGCCCTCGCCTTGTGATGGGGAGGGGGGGGACGCTATGCACGGTG
TGCTGTGTCGATTTTGTTTTGAGTATCACGATGCTAAACATTCAACATGT
ACACATTCAACGTGTACACATTCAACATGTACATATTCAACATGTACACA
TTCAACATGTACACCTTCAACACGTACACATTCAACATGTACACATTCAA
CATGTACACCTTCAACACGTACACCTTCAACATGTACACCTTCAACACGT
ACACCTTCAACATATACACATTCAACATATACACATTCAACATGTACACA
TTCAACATGTACACCTTCAACATGTACACATTCAACACGTACACCTTCAA
CATGTACACATTCAACACGTACACATTCAACACGTACATATTCAACATGT
ACACATTCAACGTGTACACATTCAACGTGTACACATTCAACATGTACATA
TTCAATATGTACACATTCAACATGTACACCTTCAACACGTACACCTTCAA
CATGTACACATTCAACATATACACATTCAACATGTACACATTCAACATGT
ACACATTCAACATGTACACATTCAACGTGTACACATTCAACACGTACACA
TTCAATATGTACACATTCAACATATACACATTCAACATGTAAACATGATA
GCATAAAGGCAATTATCAAGTATCAAGTCTCACGAGCTTACAGGTTTCAA
AGATAAAAGATCACGCCCTTGTTCACAGGACTGCGTACTATACGGTACTG
AGCTGACGTTGTTCTGAAAACAAGAGGAGGGACGGGGCTGCAAGGAGAAG
GTGCCAACGCCAACAGAGTAGATATGCACATATGTTTCGACACATAATAG
CATTGAAGACAAATGTTTAGACTTCAAGGTGTAAAGTTCCAAAGATCTCC
GGCCACGTTCACCGTTAGACTTCCCGCACATAACATGAGGCTGTTCAGGA
CCGAACCCGGTACACACGTATAATAAATCGCTCGATATTCAAATTATACA
ACCGATGCCCCGGGACACATGTATCGTGACTGGCTCGGTGTTCAATGTAC
ATAACCCGTGCCCCGGTATACGTGTAACATGACCGGTTCGTTGTTCAAAT
TATACAACCGGTGCCCGGGTATACATTTACACTTGACTGCCTATGCCAAA
AAACAGTCAGACAGAACGCAGTCAGACAGAACGAACCCTGGAACCGGTTT
TAGAAATGGAAAATCAGACACAAGCGACCGCCGACCCGCTGAAATCACAC
AGAACCGATGGCGAACCGGTTGTACAAAAGAAAAAAAAATCGCAGAACAC
CACCGAGAACCGGTTCCGCTTCTGTTCACGCGTAAAAGTCCAGTGTAACG
CCGGTCATATGAAAGGGCCTTGATAATATGCGTTGACCGCGCAAAAGTCA
TGCTCTTGAATTTTTTAGCATGTATTTTTTTTTCGTATTCGGTTGATTGA
ATCACATCATGGATTCCGATTTTTCACTGTTCGCTGTTGCTACCCATACC
TCAAGACCCTTTGGGTGCACTCACTGTATATCCCTAGTACGTTACGCTCG
GGCGACGACACGTGGTATCTCTATTTTTTGCAGGGAAGGTCCGTATATCT
ATCTGCCCGCTGTATCTTTGGAACCACGAAAAATGTCCGACATTACTAAT
TTACTTCGTTTGTTTTTTTTTCTCCTCCCCAACTGAATAGGCATGCCTGC
TAAATCTGGACTGCACTTGGTGCGGTGGGGAGCATGGGAGGGGATGCATC
CCGGCCGCCGAAGGACCCATCCGGCTAGACGACCTGGCCGCAGGCGGCAG
ACGGCAGGACGGCTCCTGTCAGGTATTTTTATGTGTATCACAGATAAGGT
CACCCACCGAAGTATCCTCATTTTTCAAAGTATTTTTGTAGCACTAAAGA
GTCATGATACAGTCACGGCTACACTGATCCATACAATTCGTACTTTTCCT
CGATTCCCCCGACTCGCTGTGTTGGCATGAAGATTCATTCGCTTTTCAGA
AGTTAGTTGATTACAGACTGGAATAAATGTTCTGAAATTACCACCACGTT
TCTTATTTATACTATTTATTGATCCTTCTGGAGCCCACACCTCGAAAATC
TGTTTTCTAGGATCTGCCTTTTGACCATGTTGATCGATCCAAATAGGCCT
TACTATATACTGGAAAATTGCAATAGGTGCTATTGTGCAGGGGAAGGAGT
TAGGGATCTCTCGTCCTGTCTAAGAAGAGCGTTCGTTGATCCGTGGGCAT
TTCGCGCTCCGCCGAAAGAACAACAGCGTTGATGGGGGCTTATCGTGATT
AGGATCACGATTGAATACTTCAGACGTCCTCCCTCCACGGAGCACAATTC
CATTCGCGAAAATCTCCCATTAGGGTCACCTAATTATATAGGAATTCGTA
TGAATAGTTCGTGCGAAGCCGAGTAGCCTCGCCTTCGATATGATCGCCTA
GGAAACAATAACTGTGGTTGCCTTAGATTGGGGTGTTTAACTGTCCACTG
TATTTGCTGTTATTATTCTTATTATTATTCTTCTTATTATTCTTCTTATT
ATTATTACTCTTCTTCTTCTTCTTCTTCTTCTTCTTATTATTTTTTTATT
TTATTTTTTTATTTATTATTATTTTTTATTTTATGGTACGTACACTTGAC
ACGAACGTTCCGCGCGTCCGTGCGCATGCGTATGCGTTTTTCCTGGAGAG
GCTCAATAGTTCCACCTATCTTTTTATGGAATGCGATGGCAGTTGGTACC
CAGTTTTTTGTTCTATGGATGATGGTTCGTGGTTCATGGTTCATGGTTGA
CACTTTGTTGTGAGCCGACGCGAGCACAACCAACGCCGGAACTATCGCTA
CTCCTATAACGTCTAACTTTCCACCCACCCTACCCCCTGTAAGCCTGCAG
CACTGTACGTTGGTAGAGCTTGACTCGGCGCCATTGGCTAGGGCCGTTTG
CGAACATACACCGGAAAGGTTTTGGGCAAACGTTGTGGGCCATCCAGGGC
GTGACGTCACCTGCTACCGTAGTGTACTTGATTTTTATATCCATGCACCA
ACTATCGCATTCGTCTACTGCAGTGGTAAAAACTCTGCTGTTCCTCGAAC
TCTAGGTGGGAAATTGCTGTCCGGGAAATTGCAACGGCGTTGGGAGGTGC
GATTTCTTCTCGGCGACGTGCTCGTGCCCGTGGCTATACGCAGGTAAAGG
GTCGAAGGATTTAGCCGCTCTTTGGAAGTAACCAACCGGCTGAACCACCT
CGAAGCGACCAAAATAGACGTAGATTTGCTAACGACCAGTCGTAAATAAT
GGCGAATAATGGCGGAGGTGTCATGAGAAAGCTACTTATACGATGCCTTT
TTTTGACGGAGTGAAGAGAGTACATTGGCGAGAAATGAAAAATATGAAGA
AGCTCTGTGATTTGGTCACAAGGGTGTCTGTGATTTAGTCACGGGTTTTT
GTTTTGGTCGCAAATTTTTGCGATTGATTATCGGACGAAGCGACCTGACG
AGGGACCAATCATGCGCCTCCTTGGACCAATCGCACAGCTTCTTCCGTTT
TTTTTTAACTCGCTAATCTCATATTTCATTTCCTTGATCAGACACCGTCT
TTTGACCGACTCTACGAACAGTTGGGTTTGCGTATCTCAAGTCCAAAAGA
AAGGCTCCATTTTTTTTTTTTTTTTTTTTGACCGATGGCGACCGTATTCT
CTTGGGTGCAGCGTAGAACCGAGACATGCAAACAGTGGACATGCCTCCGT
TAATCAATGAAAACGTTATGGAATAAGTCTCGCACAAGCTGATCAAGGCG
TCATCTGCTTTTAAACAGTTAGAACTACTGCTTCTCTCGCCCGCCCTCTT
CCCCCCACGCGTGAACATGCTACAGCTGCGGAGGATTCGAACCCTTGTGG
GATCAGCAGCCAATACTTAGTACCTGAATTTTTTTCTCTCAACAGTAGTT
CGCTTGTTTTCTTTGCCGGAAGACAGATTCTGGCGCGTTTTCAAAACAAT
CGTCGGGGAGTTGCACATATTGAGAGCAAGACAACAGATGTGCCCTCCAT
TGTAAAAGGCGTCCTTCACCTTGATTGCAGGTTCGTCGTGTGGAGAGCTG
AGCACTCGGGGGGCGGTGGCTCTGTCCATGTCATTGTCTGCACTTGCACT
CCTCATGCTCAGCCTGGCTTGTGGTCGATCCAGGTATCAGTGGATTTTTG
CTCGTGGATTTTGTTATGCCTTGAGGGGATGCACCCAAGGTGACCGAAAA
ATCCTTGCAGTTAATGCCGGATATGCCCAACTTGGGTCCTTGAAATGGAA
CTAACTGTCTCTTGAAGAGGTCTTGTAGCTTTCTCTGTACAGATTGTTGT
GACTCTTGTACTGTAGTTCAAGTCATTAAGGATCGCTGTAGAATAAATAA
ACCCATGACAATTTTCGTGCTCCCCATTTTTCGTCTTACGTGCCTTGTTT
GTTTTTTTTTCTCTTTTTTTTTTCCTTTATTTTTATTTTTATGTTTTTTC
TTTTCTCTTTTCTCTTTTTTTTTTTTTTTCTCTAACAGCCGGAGAAAGCA
GATGGAGGCCGTGGTAGGAACGCTGCAAGAGTTGAAACGCGGATTACTCT
CTGATGCTGACGGGTGAGCTGAGTCCGTATTTCGACTGCATTAGATTACC
TGTTTTGAATATTATGCGTTATAGCCTCTCTACCGCTCCGGGGCGATTCA
ACCCCATCACATTTACCATACTTATGTTCTCAATCTGACGTTCGTTAAAC
CATATCTTCAAATGTGACTCGCCTTTCACCGCTCCATATGGGAAAATGTT
GCTGAAACTATCATGGCCGCTCCCGAAGGATATCTCATCGTGGCTGAGAC
CCCTCTCTATGGCATGTTAATGTGGTCATCATCCATCATTGAGGTTCACC
CTGTATATTCTGGTAGTTGTCGACAGGTCGAAGCTACATCTATGCACGGT
AACATACGCTACTGGCTGTCGTACTGCGATTGTACTCTCTCGTATAAGTA
GTATTTATAGTCAATATCAACATGTTGGTTCCGGCCTAAGCGTTACTGTC
TGCTGGTGAACACGGTAAGTATACTTGTACACCATGCGAGGACTGAGAGC
TGTCCTCCCTTGGAGGGTAGTGATCCGCTTTCGTTCAAACAAATCGGACG
TCCGTTGTCACCCACGAGATGGACGCAGCTGTTGGGGCTTGTAATAAATA
GCCTCTCCGTACTCGTTTTAAAACAGTGTTGTAGCCACAGTTGGCAAGAT
AGGAAAGAGTGATTGTAATAGCTATCATCGGAGATCGCTCTGAGCAAAGC
TCCGTCGTCTCGAGAACTAAATGCATGGGCAAGGGTGTCACAACTACAGC
ATGAAAAACATGGGTGCTCCTTCCGTTTCCCTCAATATGGTGGTGTGTGC
GTTTATCTTGTAGCTCCGTTGGAGATGACGATTGCTCCGTACTTAGCGGA
CGATCTGGGATTGGAGGCAGGATCGCACTTTCTATGGGAGCTAGAGGGCA
ACTGGCTGGTGTAGGGGCGGGGGGTGGCGGGAGGGGCGGTGGAGTTGCGA
GCGGGGGCGTGGGCGGGTCTTATCAGCACATGTGGCCGAGGGATTACATC
CAGGATTTGCAGCAGAACTTGGCGTTAAGGTAGGCCTCGCTTTTGATTTT
TATATAGTGTATGTTGGATTTTTTGTTTTTTGTTTTTTGTTGTTGTCCCT
TTTTATTCTTTAATGTGTGTTTATATTTTCCCTGCTACATTCGGTATACT
TATTGCTGAAACATTGTACAGTAGTATACTTGGTCATGGTGCAATTCGCA
GAAAAATAGCTGTTTTTTGTTTCTTGTCTCTGCATGCCATTCTAGTTCTA
CAGTGCAAAACTGCAAGCAACGCTTCCCCCCCCCCCTCCCCGGTTCTCTC
CCGGCGCAGAGACGTGATGGTTGCCTTCAGCGAGCTGGAGCTGTCTCACA
AAATCGGTTCCGGGGCGACTGGATCAGTCTGGAGAGGCTCATGGAGAGGC
GCGGCAGTGGCCGTGAAGGTAGGTCGAAGGCTGGATTTGTTGTGAGTTAC
TCTAACAATAAAGTATCAACTCTCATTAGTCCTATTGGGTGATAGTCCTT
TTGTCAGCGGGACCCGAACTGGATGACGGAATCGGTGGATTTGATGAAAT
AATCGGGTGTGATATGAACACGTATTTGTCACTCCTGTTTTTTGCGGAAA
CTCGGTTGTCACGAGAGTTATGTCATGTTCCATACAATTTACCCGATAAA
AAAAAAGAAAAATATATGATCCGAAAATCAAGTTTTTTTCGACCCCCCAC
AAGAAACGGTCGACTCTTATCAACCTCAACTTTTTTTTTTTTAACACCAC
CCCGAATGAAGGTCGATGAAGATCAATCAATTTGGAACATGACTACGACA
GCTCGAGGACGTACTACCAAATAGACGCCCTTCCAAAACCTGTTCGAAAT
CGATCGATAGCTCACCGAAGGTCCTTCTTTGGCGCCTTCGTGGAGCGTAT
GAATTTTCTTTTGAGCATGAATAGTGATTAAATTAAAGGTCGTTTTGAAG
GTTGGTTCCACGAACAAAGCTTCTTCCATTATTTCTCTAAATAGAAAAAA
ATTATCTCCATCCAACCTGTGATCTCTTGGTCTTGTTGTATTTACTCAGT
AGTAGATGGATCCCATCGGCAAACTGTGTTTGCTGTCCAACCATTTTTTT
TCGGTCTGTTTCTTTTCTTCGTCAAAATCAAGAGTTAGTACACCCCCCCC
CCCCCGCCCCAAAAAAAAAAAGACCTTTTCGCCTCAAATGCATAGCTGCA
ACGCTTGAATATCACCCGAAAAAAAAAAAAACAGGTGATCAGGAAGCCAT
TTCATCAAGCGGTGGAGTTGACAGGTCGAGATTTGGAGATCTTCAAGCGA
GAGGCCTATCTAATGACCAGGTACACGGTTTATTATTGTCCATATTTAGA
GTGCAGACTTGGCTACGATGGGTCGATTCGGAACCGAGAAGTGCCTTGTT
TCAAGCCACAAATGGATACCGTTCAAATACTAATTAAAAGGCGAGCCGTT
TCAAAAAGCAGTAACGTTGGCTGTAACACTCCCTTATTAAGGAGAAGAAT
ATATATATATATATATATATATATATATATATATATTGGGATCTTAAATG
GTCATGTATATACCGAAGTACATTTTGCGTACATGTCCACCCCCTGCGTG
TACATGGGTAGATGATAGTCAGGTTACTAGCTTGTTACTGTAGACGGTAC
TCTAGGCAACAACATGCTTCTGAATTTGTGGTGAGAATTTACGTACACAC
ATCACTCGACCTTGGGTGAATTTTGTTTTTGTGTGGACTGTTGAAATAAG
ATGTCCCTGGAAAAAATAGCTGGCCACCATATATAGTTGGTCATCATCCA
TTTGGAGTGTATGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
TTTCTGTTGAATATATAGAAACATACATGTATGGAGAGGTACACGCCCCA
AATATGATACGCTCAAGGCACCTGGCGCGAAAATGACTGTTTCGTGGGAA
CCATGCCGAGCAAAAGAACAACGAGGGTATCTAGAGACAGGTTTTTTAAA
TATATATCATTCAAGCTTTGAAAAATCGAATAACAGTAACAAATCATTAG
AGGGGTGCCAGTGGAGTATGACTCTAACGACATGTGAAAAATAAACAGTC
GACTTCACGCGACGTTGAGCTTTCTTTCCACCCCAAACATGAAAAACAAT
GTATGTATCAGGAGCGCTGAGAGGGAAGAAGCTTAAGCCCACAACACTTT
TTACCGTTTTCCGATTCCAGACCCATGCAAAACGCATGGAGCATATAGTC
TTGTCGGTCAACCCTTTGGTTAAGCTTAAACCTTGGGTATATTGTGGGAT
AGCCGTCCAGGACCGCCTTCGGTCTCTGGGTTGTACGTGATTTGGCCGTT
TTAGCATACGGTTTTAGACTGCACCTGCAAAGTACAGAATCTCACACGTT
AAGACCCTTAATCTCATCTCCTGTCCGGTCATCGGCAAAGGTTACCCTCT
AGCCGTGTCCTACCCGAAGGCTTAGACTCGTCTACGACGTTGAGCTTGCA
CAAGTTCTCCTTTGGCACAGATGTGGATGGAATCTGTTAGGGTCACTTTC
CCCAAAAAAATCGAGGGAAAAAAAAAAAAGAGAAACCTGCGCTCACCCGG
GGATGAAAATGGCCTATCCCCGTATTTTCGGAACACAATTCACACCGAAT
TTGTGTGTTCGACCTTGCCGTACTTCACCAAATAAATTTAGTGTTTCAGA
ATAGTATTCGTAATGTGTTTTTCATGCTATGCGTAGCCAACGTGAAAAAT
TTCATGATTATTGGGGGTCGATTTCAATGTCTTGTATGGTCAATTGTTTT
TGGCGAAAATGATAAACTCTTGCCAATTTTCCCCTGTGCCTAAATACACT
TGTATATCCAGCCTAGCGTAACGGGTAGGGTAGCTCGTGAACTGAGCATG
ACTGGAAGCCTAGTCAGAGGTCTTTTAGTGGGTGCAACCCCCATACTGCC
TACTTGGTTCGGCCGAACCGGGGTGGCTCCTACCTCGCAGAGGAACAAAT
AACTCTGTTCTGTACAAGGAAATGTAGACGTACTTCGGTATGGAAGCATC
GGTTAGAGGTTTTTGCCTTAGCCGTCCGAGGTTTTAAAAAAAAAATCCAG
CCTAGCGTCACTACCCCGACATGCACAGCGCTCTCGGCGCGGCGGTTGAT
TAGGTAGGTGTCCTTCCTCTCGACAGACAATATAAATATGGTTCATAATA
TTGCTAACTATTGTAACGAACTTCGCCGCACGGCTCTACCTGCTCAAAAC
GTTGTCATGTGCCATCAATCGTGGTGCAGTCCTTGGCAAACTAATTACCG
TGTTTTGGGCTCTATGTTTTCCCATCTAAAGAGAAGCTTGTTTCGCTTGC
ATGTTGAGCGCATCGACGGTGCGCATATTTTGGCGGCGAAGAAATGGGGC
AGGGGTAGGGGGGGAGCACCAGACAGCCGCGGATAATTAATCTATTAAGT
GGCAAAAGAAAACACGCCTCACGGATAGAACTCCCCGGATTTCTTGACAC
TAACGTAGACCCTTGGTTGTGGTAATTTTGTTTTTTTAACCCCCGGAAGG
CTGAGGCAAAAACCTTTACCGATGCTTCCATACTTGAGTATTTTACCAAC
GTGGTTGTGATTATGGGCTCAAATGAAGCGTCTGACTCTAGTGCACAATG
CAAACAAACCCAAATGGAAAATGATCAATTCTCGGCGAAGTTGCGGGCAA
TATACAAGAAGATTGTATCATATATTGTGGCTGTATCTTGATAAAGGCGT
TACCTCTAGAGGGGGTCGCTCTTCGAGCATGAAAATGTTGTCAAGGCTTG
TCTTCAAAGTGAAAGCAACAAACCCTGGTGAAATATATGCTCTAAATTTT
TATTTTGTGACAGATTGCGACACCCCAACATCGTCCTTATCATGGGAATA
ACATTTGCGCCCGCGGGGCATCGAATCACACTGGACGGTCAAGAACCGAT
ATCGATCAGTCGAAGACGACAGCTGGGATTCGAAGATTTTGGT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4410:1396..15688+

>mRNA_H-paniculata_contig4410.11161.1 ID=mRNA_H-paniculata_contig4410.11161.1|Name=mRNA_H-paniculata_contig4410.11161.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2616bp|location=Sequence derived from alignment at H-paniculata_contig4410:1396..15688+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCATCGAAAATGGGCGGTAATCAAGTTCACCTCCAAACACACGGCCGG
GACGGCGGATATCTCAAACTTCGCTGTGCGCGGCCCGCCTGGAGTATCCA
TGCGTTTATCTCTCCAGTCCATCCTTTCGTCGGCGCCTCTACCGCCGCCA
CCGTCGCCGCTCTTCGAGCGGCCAAGTGGACTACGGGCACTCAACGACAG
CACTGTCTTTGACGCGGGAATGCTATCGACTGACGGCGGCGGCAGCAGCG
GCGGCCACGATGGGGGAGGGGGGTTGTGGGGAGAAGGTGTGAGGTTGGAG
AGGAAGAGGAAGGAAGCGGAGAGGGGGAAGGAGGGCCCGCAGGAGTGGGA
GTTGGTGATGGAGGCGACGTTTATCGAGTGCCGGCATATGATTGACTACG
CGAATCTGTCCGTTGCTGGTGGGCGGTGTCAGATGCATCGAAAATGGGCG
GTAATCAAGTTCACCTCCAAACACACGGCCGGGACGGCGGATATCTCAAA
CTTCGCTGTGCGCGGCCCGCCTGGAGTATCCATGCGTTTATCTCTCCAGT
CCATCCTTTCGTCGGCGCCTCTACCGCCGCCACCGTCGCCGCTCTTCGAG
CGGCCAAGTGGACTACGGGCACTCAACGACAGCACTGTCTTTGACGCGGG
AATGCTATCGACTGACGGCGGCGGCAGCAGCGGCGGCCACGATGGGGGAG
GGGGGTTGTGGGGAGAAGGTGTGAGGTTGGAGAGGAAGAGGAAGGAAGCG
GAGAGGGGGAAGGAGGGCCCGCAGGAGTGGGAGTTGGTGATGGAGGCGAC
GTTTATCGAGTGCCGGCATATGATTGACTACGCGAATCTGTCCGTTGCTG
GTGGGCGGTGTCAGGCATGCCTGCTAAATCTGGACTGCACTTGGTGCGGT
GGGGAGCATGGGAGGGGATGCATCCCGGCCGCCGAAGGACCCATCCGGCT
AGACGACCTGGCCGCAGGCGGCAGACGGCAGGACGGCTCCTGTCAGGCAT
GCCTGCTAAATCTGGACTGCACTTGGTGCGGTGGGGAGCATGGGAGGGGA
TGCATCCCGGCCGCCGAAGGACCCATCCGGCTAGACGACCTGGCCGCAGG
CGGCAGACGGCAGGACGGCTCCTGTCAGGTGGGAAATTGCTGTCCGGGAA
ATTGCAACGGCGTTGGGAGGTGCGATTTCTTCTCGGCGACGTGCTCGTGC
CCGTGGCTATACGCAGGTGGGAAATTGCTGTCCGGGAAATTGCAACGGCG
TTGGGAGGTGCGATTTCTTCTCGGCGACGTGCTCGTGCCCGTGGCTATAC
GCAGGTTCGTCGTGTGGAGAGCTGAGCACTCGGGGGGCGGTGGCTCTGTC
CATGTCATTGTCTGCACTTGCACTCCTCATGCTCAGCCTGGCTTGTGGTC
GATCCAGGTTCGTCGTGTGGAGAGCTGAGCACTCGGGGGGCGGTGGCTCT
GTCCATGTCATTGTCTGCACTTGCACTCCTCATGCTCAGCCTGGCTTGTG
GTCGATCCAGCCGGAGAAAGCAGATGGAGGCCGTGGTAGGAACGCTGCAA
GAGTTGAAACGCGGATTACTCTCTGATGCTGACGGCCGGAGAAAGCAGAT
GGAGGCCGTGGTAGGAACGCTGCAAGAGTTGAAACGCGGATTACTCTCTG
ATGCTGACGGCTCCGTTGGAGATGACGATTGCTCCGTACTTAGCGGACGA
TCTGGGATTGGAGGCAGGATCGCACTTTCTATGGGAGCTAGAGGGCAACT
GGCTGGTGTAGGGGCGGGGGGTGGCGGGAGGGGCGGTGGAGTTGCGAGCG
GGGGCGTGGGCGGCTCCGTTGGAGATGACGATTGCTCCGTACTTAGCGGA
CGATCTGGGATTGGAGGCAGGATCGCACTTTCTATGGGAGCTAGAGGGCA
ACTGGCTGGTGTAGGGGCGGGGGGTGGCGGGAGGGGCGGTGGAGTTGCGA
GCGGGGGCGTGGGCGGAGACGTGATGGTTGCCTTCAGCGAGCTGGAGCTG
TCTCACAAAATCGGTTCCGGGGCGACTGGATCAGTCTGGAGAGGCTCATG
GAGAGGCGCGGCAGTGGCCGTGAAGAGACGTGATGGTTGCCTTCAGCGAG
CTGGAGCTGTCTCACAAAATCGGTTCCGGGGCGACTGGATCAGTCTGGAG
AGGCTCATGGAGAGGCGCGGCAGTGGCCGTGAAGGTGATCAGGAAGCCAT
TTCATCAAGCGGTGGAGTTGACAGGTCGAGATTTGGAGATCTTCAAGCGA
GAGGCCTATCTAATGACCAGGTGATCAGGAAGCCATTTCATCAAGCGGTG
GAGTTGACAGGTCGAGATTTGGAGATCTTCAAGCGAGAGGCCTATCTAAT
GACCAGATTGCGACACCCCAACATCGTCCTTATCATGGGAATAACATTTG
CGCCCGCGGGGCATCGAATCACACTGGACGGTCAAGAACCGATATCGATC
AGTCGAAGACGACAGCTGGGATTCGAAGATTTTGGTATTGCGACACCCCA
ACATCGTCCTTATCATGGGAATAACATTTGCGCCCGCGGGGCATCGAATC
ACACTGGACGGTCAAGAACCGATATCGATCAGTCGAAGACGACAGCTGGG
ATTCGAAGATTTTGGT
back to top