|
|
Homology
BLAST of mRNA_H-paniculata_contig4388.11122.1 vs. uniprot
Match: A0A6H5L6E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6E1_9PHAE) HSP 1 Score: 260 bits (664), Expect = 8.020e-75 Identity = 151/288 (52.43%), Postives = 197/288 (68.40%), Query Frame = 1
Query: 7 SNAFVQSRGVWNAARVAPLLSVEGLCRTAEACAAGMEDGHPLFLRLHACRALDLLSRHATKLSREGGPYGLPGAAGRAMCFARVGAAVRAAVSAAPALAAACEENSAHVVVETMTQLVKQLPAHAVGNGGARILIQMAMGMWVRHPTHGFIVEVVEDLLIALPRVPQALPHMLDTVVPCLPEVFERVRLGEIRLESVAQGALALLREVAKR---AGEFVGD-------GATSTCGGVASAEAGCCGGTSLIAVGESLLAGLRGAGPLLLQTDSHALMQEGCSTLKAFV 840
S+ FV +RG+W AR A LLS EG+CR+AEAC+ M +G PL LRLHACRAL +L +++ +++R GG +G+ AG+A+ +RVG A RAAV+AAP LAA EE +AH ETMTQLVK PA AV GG +L+Q++M +W R+P+ +VE VEDLL+AL RVPQA+P M +T+VP EVFER R GE L++VA+G L+LLRE+ R AG VG G T + GG ++A C L SL AGLR A PLLL+TDSH+L+Q+GCSTL+ FV
Sbjct: 586 SSPFVHARGLWATARFASLLSAEGVCRSAEACSLAMGEGRPLCLRLHACRALRVLGQYSARIARRGGFFGIKRGAGKALLGSRVGTAARAAVTAAPGLAACFEEGTAHFAPETMTQLVKAFPAEAVAGGGDLVLMQLSMSLWRRYPSDPLVVEAVEDLLLALTRVPQAVPRMTETLVPLFQEVFERRRAGEEELQAVAEGCLSLLRELTTRLAAAGGGVGGVHSRGGAGRTDSGGGFSAAATRCDSSARL-----SLWAGLRAAFPLLLETDSHSLVQDGCSTLQEFV 868
BLAST of mRNA_H-paniculata_contig4388.11122.1 vs. uniprot
Match: D7G8B3_ECTSI (Importin N-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8B3_ECTSI) HSP 1 Score: 254 bits (650), Expect = 6.150e-73 Identity = 148/290 (51.03%), Postives = 193/290 (66.55%), Query Frame = 1
Query: 7 SNAFVQSRGVWNAARVAPLLSVEGLCRTAEACAAGMEDGHPLFLRLHACRALDLLSRHATKLSREGGPYGLPGAAGRAMCFARVGAAVRAAVSAAPALAAACEENSAHVVVETMTQLVKQLPAHAVGNGGARILIQMAMGMWVRHPTHGFIVEVVEDLLIALPRVPQALPHMLDTVVPCLPEVFERVRLGEIRLESVAQGALALLREVAKRAGEFVGDGATSTCGGVASAEAGCCGGTSLIAVGE------------SLLAGLRGAGPLLLQTDSHALMQEGCSTLKAFV 840
S+ FV +RG+W AR A LLS EG+CR+AEAC+ M +G PL LRLHACRAL +L +++ +++R GG +G+ AG+A+ +RVGAA RAAV+AAP LAA CEE +AH ETMTQLVK PA AV GG +L+Q++M +W R+P+ +VE VEDL++AL RVPQA+P M +T+VP EVFER+R GE L++VA+G L+LLRE+ R G GGV G G T SL AGLR A PLLL+TDSH+L+Q+GCSTL+ FV
Sbjct: 660 SSPFVHARGLWATARFASLLSAEGVCRSAEACSLAMGEGRPLCLRLHACRALRVLGQYSARIARRGGFFGIKRGAGKALLGSRVGAAARAAVTAAPGLAACCEEGTAHFAPETMTQLVKAFPAEAVAAGGDLVLMQLSMSLWRRYPSDPLVVEAVEDLMLALTRVPQAVPRMTETLVPLFREVFERLRTGEEELQTVAEGCLSLLRELTTRLAAAGG-----VVGGVH--PRGAAGRTXXXXXXXXXXXXXDSSARLSLWAGLRAAFPLLLETDSHSLVQDGCSTLQEFV 942
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 258.1 |
| Seed ortholog evalue | 5.5e-66 |
| Seed eggNOG ortholog | 2880.D7G8B3 |
| Preferred name | IPO9 |
| KEGG rclass | RC00002,RC00017 |
| KEGG ko | ko:K00876,ko:K20224 |
| KEGG TC | 1.I.1 |
| KEGG Reaction | R00513,R00516,R00517,R00962,R00964,R00967,R00968,R00970,R01548,R01549,R01880,R02091,R02096,R02097,R02327,R02332,R02371,R02372,R08232 |
| KEGG Pathway | ko00240,ko00983,ko01100,map00240,map00983,map01100 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0005829,GO:0006606,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008536,GO:0008565,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0017016,GO:0017038,GO:0017076,GO:0019001,GO:0019899,GO:0022613,GO:0031224,GO:0031267,GO:0031647,GO:0031967,GO:0031975,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033036,GO:0033365,GO:0034504,GO:0034613,GO:0035639,GO:0036094,GO:0042254,GO:0042393,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0050821,GO:0051020,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061608,GO:0065007,GO:0065008,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0097159,GO:0097367,GO:0140104,GO:0140142,GO:1901265,GO:1901363 |
| EggNOG free text desc. | Ran GTPase binding |
| EggNOG OGs | COG5657@1,KOG2274@2759 |
| Ec32 ortholog description | Armadillo-type fold |
| Ec32 ortholog | Ec-19_003830.1 |
| EC | 2.7.1.48 |
| COG Functional cat. | D |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01000,ko03009 |
| Exons | 6 |
| Model size | 961 |
| Cds size | 960 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4388.11122.1 >prot_H-paniculata_contig4388.11122.1 ID=prot_H-paniculata_contig4388.11122.1|Name=mRNA_H-paniculata_contig4388.11122.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=320bp
GASNAFVQSRGVWNAARVAPLLSVEGLCRTAEACAAGMEDGHPLFLRLHA
CRALDLLSRHATKLSREGGPYGLPGAAGRAMCFARVGAAVRAAVSAAPAL
AAACEENSAHVVVETMTQLVKQLPAHAVGNGGARILIQMAMGMWVRHPTH
GFIVEVVEDLLIALPRVPQALPHMLDTVVPCLPEVFERVRLGEIRLESVA
QGALALLREVAKRAGEFVGDGATSTCGGVASAEAGCCGGTSLIAVGESLL
AGLRGAGPLLLQTDSHALMQEGCSTLKAFVITLSNISTTPSTNAVNTHRA
ALQGNFLAGSPGGIVCLADT back to topmRNA from alignment at H-paniculata_contig4388:974..5571+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig4388.11122.1 ID=mRNA_H-paniculata_contig4388.11122.1|Name=mRNA_H-paniculata_contig4388.11122.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4598bp|location=Sequence derived from alignment at H-paniculata_contig4388:974..5571+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGCAAGCAATGCCTTCGTCCAGTCGCGAGGTGTGTGGAACGCCGCTCG
CGTCGCGCCCCTTCTGTCGGTAGAGGGGTTGTGCAGGACGGCGGAAGCGT
GTGCAGCGGGCATGGAGGATGGGCATCCCCTGTTTTTGAGACTACATGCT
TGTCGTGCTCTGGATTTGCTCAGTCGGTGTGTGTGTGAGAGAGAGAGAGA
CACAGAGAGAGTCAGTGTAGATGTTCATTTTTCTTGTTTTTTTAACGATC
TCGCTGTCCTTGTACATTTTTGTATCTTATACAAGAAGGTTGTTTGTGAC
GGTTTGGCTTTTGGTGTTGTGTCGGCGATGAAACGGAGGTGGTTTGCTGT
GAATGACTCTAAACCGCCTTCTCGTACCGTTTTATTTTTGTCTTGTTTTT
CAATCACAAGAAAGTCAATCATGCGTGGGTTGTACTTGAATTCACTTGTT
GAAAAAATGCGGTTGTCGCACAGCAGATGAGACTACGGCAGAACCACCGA
CAGGGGAGCAAAGCAGTTGGTAGACACAAAGGTATTTAGCTCGGTTAGGA
AAGCGTACACCTCGAATTTCCCCCGCCTTTCCTGCCACTCCTATTTGTTC
ATCAGGGCATATGGGGGTTCGTGCGGTGTACACTATCCTGTGAGCCTGTT
TCCCCGGTCGAAGGATTCACGACATATTCACACATCTGCTGAACTGGTTG
CCACGCCCTAGAGCCAAACAAGTTGTGACCGTACTTCATCAGGGGTGCAT
GATCGGATTATACCCCAGAAGGTGTATTAACACACGAAGCGACATGTTTG
CTGTGCGTTGCGCGATGTTTTGTACGTGCTCGGGAAGGTTAAAGTCCTGT
GCGGTACTTGGGGTACAGTCACGTCTGCCGAATGTGGAACAATTGCTTAC
CCGGGATCCCCAAAACCCCATGGCAGACTCTGGTTGGCGGAACAACGCAA
GGATGGATGGTGTTTATTAGCTACTTAGTATCATCCTTGTGACTTGGCGG
AGTCTGGCCTGCGAAAACCCGGCAGGCCCCATTCCGGCATTGTAGGAATG
CGAGGTCAATGATCGAGGCGTTACGGCAGGCACTTTCATGAGTTTCAACA
TTCCGTTCTCGTCACTTGCTCGGTTTGTGGATCGGTCACTCAGCAGCGTA
CTTTTTAGTTGGCTGAGCGTGCACCCCTATTTGATCGATGGTTTTTGGCA
TGTTTCAGTTCGTTCTTGAATGTATTTCAAACCGTATTTTCATGTTGTCG
ATTCTGTCTGTCTGTCTGTCTTGTTGTTGAAGCTGTCTTGCCCACCCCGC
CCTCCCCCGCTCCGCGCCCGTGCGGTGAGCGTAACATTTCGAATCATATT
CCGCAACGTGGAAACATGTGGCAACGTTGAAAAGAGCGATTGACTAGTCA
TCGGAGATCGCTTTGATAGGAACGAAGCTTCTGTCTCTCGTGGGCGAATC
GTCAACGGTAACACAACTAGGGCATGCCGAGAATGAGTACACCCTTTGTT
GGTCTAATTTTGCTGATGAGTGTATATAACTGGAGGTGAGCTCCCCCCCC
TCCCCGACCTTTCCTCCCTCCCTCTACCGAATCAACTCCCCGTGTGTCCC
TCGATAAATAGGCACGCTACAAAATTGTCTAGGGAAGGCGGACCGTACGG
ATTGCCGGGGGCAGCGGGGAGGGCCATGTGCTTCGCTAGGGTAGGCGCGG
CGGTCCGTGCGGCTGTTAGCGCTGCCCCCGCTCTAGCCGCCGCTTGCGAG
GAGAACTCGGCGCACGTGGTAGTGGAGACCATGACACAGGTTAGTGAGGG
ATGTTAGGAGAGGGGGCGTTTGGATGAAAAACTCGCGTGCGTGGTATGTC
CAATGGCCAAGGAAAAACAGGAAGGAAGGACAGAGGGGGGGGGTGGGAGG
TGTTGAATGTATCACTTCGATTTCTGTCTCCTTCTACCCCACACACATAT
TGTAATGCGATCTATTTCTTGTCTCTCGCATCTTCTCTTGTATCGGATTT
GTTTGTGTTCTTGTTCCTTGTTTTTTTGTCTGCTGTCCATTATTTACTGC
TCTTGCGTCCATTGATTTTCGATGCTTTATCCTACGCTCTTGTTTTCACG
CAGCTCGTGAAGCAACTTCCGGCGCATGCAGTCGGAAACGGCGGCGCACG
AATCTTGATCCAGATGGCTATGGGGATGTGGGTGCGGCATCCTACTCACG
GCTTCATTGTCGAGGTGAACTCTAAATCTTTGGGGCTGGGTACTGGTACA
CGAAATATGGCATTACAGCATGGGCCCACTGATGATAAATCACGCAATAA
CAACTTGAGACTCATTTTGTCCTCACCGATAGGAATTCCTGCCTAAGAAA
CGGGGTTCATGTTGTGGCGCCATACTAACCCCTATATATGTAGAAAATAG
AGCTACTTGTTGTTCTCGCCAAGACAAGGTTTTAGCCTCACCCGAAACAA
GAGTGTCTTATCGTCGGGCCCGTGTTGTAGTAGTGGCTCAGGGATTTTCT
ATATCACAGTATTTTTTTTAGTTCACGTACGTCTTCGGAAAGTGAATCGA
CTGATTATTGTACCGAGACCCTGCATTAATCATCTTCCATTTAGCGCCAC
ACACCTGTAGAGAGGCAGGTGAGGACAATAATACTTGTGAACGCTGTCAG
TATGTTATCCTCAAAACCTTACCTACAGTAGTACTCGGTACGTCGGTCGT
CACAGTATTTACACTAAACCTACTTATTCTGCTGTTTTTTTCTTTCGCTC
GGTGGGATAAATGGATGATACCAGCAGGGTAAAGAATTTCGAACATTTTC
ATAGGGCTGTCATGGAATAGTTTTTCAACATCCTGCAGGTATTTCGAGAA
CACTGGGTGTGTTATATGCCCTCTTCTTACCTTCGGGTTGATGAAATACA
AGCCAAAAATGCTGACTGAAAACATCCCCATAATACTGGTGATCGGCTGT
CGAATCCTGATACCCTGGGAAGCCTGGCAGACTCTCTCAGCTGTCCGTCC
CGTCACATTGTTTCTGAGACGGCCCAAATGTCCGCTGGTCCACGAGTGGA
AAAAACCCGGGGCAATCAGAGAAATCTGAATATTTAACTACGTCCCCTAC
AACATTCGAGTTTTTCTGATTTCAACATGTGAAATTTATAATATTCAGGT
CAAAAATGGAAATTGGCGTTTTTTTCTTCATTTTGTCATATTTTCATACT
TTGACACCCCATTTAATTACTTGGTAAAGTACATGTGTACGGTAGTAGTA
GTAGCAGTAGTAAGTTGTACCCTAGTGTATTTTTTTCATTGTGGTTTTGG
GAAAGCAAAAACTTTTTTTGCTGTGACGCAGGACGTCTGTTTTTTTTTGG
CCTTGTGTCTGTTGTGTCAAATTGCGTCGTAAGGTACAGCAGTTTACAAG
CTGCAGTTGCTGTTTACGCAAGTGCGTCCGTCTTTTTCCCTTTTCCTCTA
CCCGTCGCTTTGTCTGTTCATGTGTCTGTTTCATTGACTCTGCCTAAACA
TGCTAACTGTCTGTCTGTACGTATGTATGTATGTGTGTGTTCGTGACAAA
TAATATTTTCAAAACCAAAAGGTGGTGGAGGACTTGCTGATCGCCTTGCC
CCGAGTCCCACAAGCTCTGCCTCATATGCTCGACACCGTGGTTCCTTGTT
TACCAGAGGTGAGGCATTAGTCGTCGTTTGAGAGCTGAACTGTTGTTGCT
CTTGTTGCTGCTTACTGTTGATGATTGTTGTTGTGGTGGTGCTCATTTGT
CACCTGTACACCTAGCGAGCAATTTTTCATAAATGGGAAAGTATGGAGGA
CACAGGGGGGTAGCCATTTCTGTACTATGTCATGCTTTACTGCATCATGC
TAAATGGTCCGAATCCTCCCCTTAGCCCTCCCGCCTCCCTCTGGCCCACC
CATCCACCCTACATCCCTTCGCCCCACCCTCCTTGCCGCCCGGTCACCCC
GTCGCGACTTCACAGGTATTTGAGCGAGTAAGGTTGGGAGAGATCCGACT
GGAATCGGTAGCCCAGGGCGCGCTCGCGTTGCTGCGAGAGGTGGCTAAAC
GCGCTGGTGAGTTTGTGGGCGATGGGGCCACAAGCACATGTGGTGGCGTC
GCATCGGCGGAAGCTGGATGTTGCGGAGGGACTAGCTTGATCGCTGTGGG
GGAGTCCCTGTTGGCGGGGCTGAGGGGGGCCGGCCCTTTGCTGCTGCAGA
CTGACTCACACGCGCTGATGCAGGTATACGCGGGGATGAGTGCAGGGTGT
TTGGGGCAATGGATCTATTTGTGGTAGTGCACGTTTTCCTTATGTACAAT
ACAGACGTGGTATTTCAAAATCTCTTGTCTTCTCGAGGTGGGTTCGAATT
GCTCACTGCTCACAGCGTCACACTATGCAAACCCCAATCACCACAACGAT
GCCCACCCATCTCCACCCCCCCAACGTATTTTTCAAATAAACGTTAGGAG
GGGTGCAGCACGCTGAAAGCCTTCGTCATTACACTCAGCAATATCTCCAC
CACCCCGTCCACCAACGCCGTCAACACCCACCGCGCTGCACTACAAGGCA
ACTTCCTCGCAGGATCTCCGGGGGGCATTGTTTGCCTCGCCGACACCA back to topCoding sequence (CDS) from alignment at H-paniculata_contig4388:974..5571+ >mRNA_H-paniculata_contig4388.11122.1 ID=mRNA_H-paniculata_contig4388.11122.1|Name=mRNA_H-paniculata_contig4388.11122.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1920bp|location=Sequence derived from alignment at H-paniculata_contig4388:974..5571+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGCAAGCAATGCCTTCGTCCAGTCGCGAGGTGTGTGGAACGCCGCTCG
CGTCGCGCCCCTTCTGTCGGTAGAGGGGTTGTGCAGGACGGCGGAAGCGT
GTGCAGCGGGCATGGAGGATGGGCATCCCCTGTTTTTGAGACTACATGCT
TGTCGTGCTCTGGATTTGCTCAGTCGGGGGCAAGCAATGCCTTCGTCCAG
TCGCGAGGTGTGTGGAACGCCGCTCGCGTCGCGCCCCTTCTGTCGGTAGA
GGGGTTGTGCAGGACGGCGGAAGCGTGTGCAGCGGGCATGGAGGATGGGC
ATCCCCTGTTTTTGAGACTACATGCTTGTCGTGCTCTGGATTTGCTCAGT
CGGCACGCTACAAAATTGTCTAGGGAAGGCGGACCGTACGGATTGCCGGG
GGCAGCGGGGAGGGCCATGTGCTTCGCTAGGGTAGGCGCGGCGGTCCGTG
CGGCTGTTAGCGCTGCCCCCGCTCTAGCCGCCGCTTGCGAGGAGAACTCG
GCGCACGTGGTAGTGGAGACCATGACACAGGCACGCTACAAAATTGTCTA
GGGAAGGCGGACCGTACGGATTGCCGGGGGCAGCGGGGAGGGCCATGTGC
TTCGCTAGGGTAGGCGCGGCGGTCCGTGCGGCTGTTAGCGCTGCCCCCGC
TCTAGCCGCCGCTTGCGAGGAGAACTCGGCGCACGTGGTAGTGGAGACCA
TGACACAGCTCGTGAAGCAACTTCCGGCGCATGCAGTCGGAAACGGCGGC
GCACGAATCTTGATCCAGATGGCTATGGGGATGTGGGTGCGGCATCCTAC
TCACGGCTTCATTGTCGAGCTCGTGAAGCAACTTCCGGCGCATGCAGTCG
GAAACGGCGGCGCACGAATCTTGATCCAGATGGCTATGGGGATGTGGGTG
CGGCATCCTACTCACGGCTTCATTGTCGAGGTGGTGGAGGACTTGCTGAT
CGCCTTGCCCCGAGTCCCACAAGCTCTGCCTCATATGCTCGACACCGTGG
TTCCTTGTTTACCAGAGGTGGTGGAGGACTTGCTGATCGCCTTGCCCCGA
GTCCCACAAGCTCTGCCTCATATGCTCGACACCGTGGTTCCTTGTTTACC
AGAGGTATTTGAGCGAGTAAGGTTGGGAGAGATCCGACTGGAATCGGTAG
CCCAGGGCGCGCTCGCGTTGCTGCGAGAGGTGGCTAAACGCGCTGGTGAG
TTTGTGGGCGATGGGGCCACAAGCACATGTGGTGGCGTCGCATCGGCGGA
AGCTGGATGTTGCGGAGGGACTAGCTTGATCGCTGTGGGGGAGTCCCTGT
TGGCGGGGCTGAGGGGGGCCGGCCCTTTGCTGCTGCAGACTGACTCACAC
GCGCTGATGCAGGTATTTGAGCGAGTAAGGTTGGGAGAGATCCGACTGGA
ATCGGTAGCCCAGGGCGCGCTCGCGTTGCTGCGAGAGGTGGCTAAACGCG
CTGGTGAGTTTGTGGGCGATGGGGCCACAAGCACATGTGGTGGCGTCGCA
TCGGCGGAAGCTGGATGTTGCGGAGGGACTAGCTTGATCGCTGTGGGGGA
GTCCCTGTTGGCGGGGCTGAGGGGGGCCGGCCCTTTGCTGCTGCAGACTG
ACTCACACGCGCTGATGCAGGAGGGGTGCAGCACGCTGAAAGCCTTCGTC
ATTACACTCAGCAATATCTCCACCACCCCGTCCACCAACGCCGTCAACAC
CCACCGCGCTGCACTACAAGGCAACTTCCTCGCAGGATCTCCGGGGGGCA
TTGTTTGCCTCGCCGACACCGAGGGGTGCAGCACGCTGAAAGCCTTCGTC
ATTACACTCAGCAATATCTCCACCACCCCGTCCACCAACGCCGTCAACAC
CCACCGCGCTGCACTACAAGGCAACTTCCTCGCAGGATCTCCGGGGGGCA
TTGTTTGCCTCGCCGACACC back to top
|