mRNA_H-paniculata_contig4384.11114.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4384.11114.1
Unique NamemRNA_H-paniculata_contig4384.11114.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4384.11114.1 vs. uniprot
Match: A0A6H5KJG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJG0_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 8.760e-30
Identity = 66/105 (62.86%), Postives = 78/105 (74.29%), Query Frame = 1 
Query:  166 GLVSLVEGQALVAAVKGLADD--GLCARNR---LSCTGIWYRVFGGTPLGIYAIGPKRRLGLIVRALPRGVGYLVVLYRRPHLAQQVVPHVERFIDTLLEGHLGR 465
            GLVS  EGQ LVAAVK L DD   +C +     L+C G+ +RVFGGTPLGIYA+GP RR+GL+VRALPR VG+LVV+YRRPHL QQVV  VE+F+D    G  GR
Sbjct:  173 GLVSSSEGQRLVAAVKSLTDDDDAICRKQEEQPLTCMGVPFRVFGGTPLGIYAVGPGRRVGLVVRALPR-VGFLVVVYRRPHLPQQVVGEVEKFVDDFWAGTQGR 276
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4384.11114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJG0_9PHAE8.760e-3062.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4384contigH-paniculata_contig4384:6724..11416 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-16_002620.1
Exons3
Model size971
Cds size468
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4384.11114.1prot_H-paniculata_contig4384.11114.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4384 6724..10913 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930325.0046017-CDS-H-paniculata_contig4384:6723..69211622930325.0046017-CDS-H-paniculata_contig4384:6723..6921Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4384 6724..6921 +
1691481242.1654456-CDS-H-paniculata_contig4384:6723..69211691481242.1654456-CDS-H-paniculata_contig4384:6723..6921Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4384 6724..6921 +
1622930325.0220711-CDS-H-paniculata_contig4384:8494..86821622930325.0220711-CDS-H-paniculata_contig4384:8494..8682Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4384 8495..8682 +
1691481242.180957-CDS-H-paniculata_contig4384:8494..86821691481242.180957-CDS-H-paniculata_contig4384:8494..8682Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4384 8495..8682 +
1622930325.0420117-CDS-H-paniculata_contig4384:10831..109131622930325.0420117-CDS-H-paniculata_contig4384:10831..10913Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4384 10832..10913 +
1691481242.1894736-CDS-H-paniculata_contig4384:10831..109131691481242.1894736-CDS-H-paniculata_contig4384:10831..10913Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4384 10832..10913 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930325.0552073-UTR-H-paniculata_contig4384:10913..114161622930325.0552073-UTR-H-paniculata_contig4384:10913..11416Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4384 10914..11416 +
1691481242.1977198-UTR-H-paniculata_contig4384:10913..114161691481242.1977198-UTR-H-paniculata_contig4384:10913..11416Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4384 10914..11416 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4384.11114.1

>prot_H-paniculata_contig4384.11114.1 ID=prot_H-paniculata_contig4384.11114.1|Name=mRNA_H-paniculata_contig4384.11114.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=156bp
QTSSADAYEAYLNGLLANSSDVNGGCVAGCILLDTQGAALYQRRIDRCLP
CRDDGGLVSLVEGQALVAAVKGLADDGLCARNRLSCTGIWYRVFGGTPLG
IYAIGPKRRLGLIVRALPRGVGYLVVLYRRPHLAQQVVPHVERFIDTLLE
GHLGR*
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mRNA from alignment at H-paniculata_contig4384:6724..11416+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4384.11114.1 ID=mRNA_H-paniculata_contig4384.11114.1|Name=mRNA_H-paniculata_contig4384.11114.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4693bp|location=Sequence derived from alignment at H-paniculata_contig4384:6724..11416+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGACTAGCTCCGCCGACGCCTATGAGGCCTACCTCAATGGGCTTCTCGC
CAACAGCAGTGATGTTAATGGCGGATGCGTCGCCGGTTGTATCCTGCTAG
ACACGCAGGGTGCCGCGTTGTACCAGAGGCGCATCGATCGATGTTTGCCA
TGCCGCGATGACGGCGGACTTGTTTCCTTGGTGGAGGGCCAAGCCTTGGT
GAGACGGGTTACTGCTGCTGCTGCTTCTGCTCCTGGCTGCTGTTGCTTTT
GCTGTTGCTTTTGCTATGGCTGTAGTCACTATTTACAATAACGTTCATAG
GTTTAAGCGCCACCTTGGGTATATATGCGATTGCTGCTTCTTTTGTGTCA
TTCCTGTTGACTGTCTTTTTTTTTATCGCTTTTTCTCATTTTTTCTTCTT
TTTTACGGTGTAGAGTGCTAGAGTACCTACTTCCCCAAATATATCTAGTA
CAGTTATGTGATGTGTGTTGAAATTTATTCAAATAAACGTCGTACTTTTC
AAAGGTCCGATGCAGGTAATCAGCATCGCAAGGTAACGTGCAATTATTAA
TTATTACGAGCATCTTCCAATCCGGTTTTACAGTTTGCTATCCGATTCGT
TTATTGGGGACTCACCCAATTTGATGGATATATCATGGTACCAGTCATTT
GCTACACTTGAGAAATTACATCTATAACTCGCTCCCATAGTCGGTCCAAC
AATTCACGGACGCGTCGACAGCCTCTCGGTCTATGTTGACTGATGGCAGA
TTTTTCTGCGGTTGCTTTGATTTGCAGTATTGATGTACTTGCACGTACTT
CTCTGAGACTGGAAGAGTATTGCGAATGTTTTGGTCGATCAACAACCAGG
GAGCACGAAGAACAGCACACACAAACACACACACACAAACACACACACAC
AAACACTACAGGATTTGTTTTTGAGTCAAGAATGAGCAAGGTGCACAGAG
AGGAAGTTCATTTCACTCACCATGTGTTTTTTTGTGCAGTTTAACTTTAA
CTGTAGTAGTACTATAGATCGAGGCACAACGGCAAGCAAGATTCATCACT
ACCACACCACAGTGGACCTCATGACTCGGTATACCCCATGTCGCTGCTCG
GCCTTCGATGGCAGTCGGGAGGGACGAGGGGGGGCTAGGGCATGTCTTTG
TATACGCATGTTGGGTGGTTCTCCCATCTGGTTACTTGATTCAGACTGAG
TGTGCGTGTGACACTGACTGTAATGGCGTAACGGTTGCGAATGTTGTAGG
AACATTCTCAGAGTTCTATATTGTTCTGATTCTTATTTCTTGTCCTGAAT
CCGGTTCGTATGTACGTAGAATCTGGTTCGGATCCATTTCTTGTTATTGA
TCGGAGGAGAGACGCGAGGGTACCACCGTGTGCCCCCCTTCTGTCACTCT
CCTTCACAGTCCCACATCTACATCATACTACAAGCTCCACAACTCTTGTC
TTTACGCTCGCGCTACAAGCCCAATCCCGTGGAAGCCTCGAGATATCGAA
CAGGGCAAAGGGTCCTACATTGTTCGTAGTTTATACACACGCAGAGACAA
ACACTCCACCACACGCGCTGCCGTGCTGACGCGGCCCTTCCCCCTGCTCT
ATTTACTCTGCCATGACCTGTTCCATTTTGATCCAGTCCTGTCAAATATG
ATCTGAATATACCAGATCAGATCTGGCTTGGCCTAAACTGACCCGAGTTG
ATCCCCTTTTGTGATTGGTCGTTTTTTTTCCTTGGTGCTTTGCAATCATT
GGGTGCACCACGACAGAACAGGTAGCAGCCGTGAAGGGACTTGCTGACGA
TGGTCTTTGTGCACGAAACCGACTCTCTTGCACCGGAATTTGGTATCGAG
TGTTTGGCGGCACACCCCTGGGGATCTACGCTATCGGACCCAAGCGACGG
CTAGGTCTCATCGTCCGAGCACTCCCTCGTGGTGTAGGCTACCTGGTTGT
GCTCTACAGGTGATACGTGCAAATAGAATGGGGGAGGAGGGGGCGGGGGT
AATCATGTTTTGCATGCGGTGGTCGTTAGACCGTTGATCACGCGTCCTCG
GGAGAACGGATTTTTTCCTGTCAGGCCATCTCTTACAGGGCAAAAAAAAA
CTCCAATCAAAAACATAAAATGCTATTTTTCGATCTGCAAAAATATGATA
ATGAAAAATTGATTCTCTCATCTCATAGGGTAAAAAAATCAGGAAGCAGT
TTATCGGAGGTTTGGTGGCGTTTTGTAGGCGGCGCAATTTCGCGAGAGAA
TTTCAAATATACCAGGCCTCGTCCAGCAGCACACAGCACATCTTCATCCT
TTGAAAGCGGACCACCATGAATGTACCATCCACCTCAATGCACATCAAGA
CGAACCCATGCGTTGAATGGGTGTGGAAGGAACTGAGGGCTCAAGGGCTC
ATCACGGTCGTCTTCGCGCTCAGCCTTCTCAACCGCCGCAAGGGTGGGAA
GAGGAAGTGCCTCTGCACCCAGAAATTGATTGCGCCTGTCCTCTTCGTCC
ATGTATTCGACAGCCGCCACTACAGCACCAAGCGCCAACGTAGTAAACGT
ATGCAATTCCTCCAGATTTGCCATAGGGCGGCCGGGCTCACACGTTGGAT
TATGTATGTGTCCTCGTGGCCTCTGCGACCAACGTGAGGGTCCCACTGTC
TGCTGTGAAAGATCAACAGTCTGAGAGGAAATCCGAGTAAAGCCTGCGTA
TCTCGTTGAATTCCCGGAAAATTGATTCTGTTGATCGACTGCCAGGGCAA
TAAAATAATTACCAGATTTTTGTAGCTGGAGGCTGTCGGTTCTCCCCAAA
CGTTTTTCTCCAGACAATTTTTCGAGTTTTTTTTTTCCCTATAAGATGAG
GAATCAAAAATCTCTCAAACGAAAAATTCAAATTTATGTTTTTGAGTGTC
TTTTTTACCCTATAAAAGATGGCCTCAGATCGATTTCCGCTGACAGCCAA
TCGATAGTTTCCAGGTTGGCAAGTGTGGCTCGAAAATATACTTGCCTAAA
CTATTCTTGTGAGGGGGTAGGCAACAATGAGAGACCATTGACTTGTCATC
CCTACAACCCTGGGACGGAGCTATACTTTTTTGCAAGGGTGATGCTGTAC
CAACTGCTATAATACTAGGTCAAAATCGTTTAATTCTTGCGTTGTAAATA
TTGCCAATATCGGATTTGGCAACCAAAATGTTGCACATTTGATCGGCGTG
TTTACTCCAAGTGGCACAGGATATATACATATATATATATATATATATTG
TTTTCATCTCCGCCGGGACACAACTGACATCAACGGTAGTGCGTATTGCA
CCTGAAGTATATTATAGTTTAGTCTACTTTATGTTTTAACTGACTACTGG
CTGAGAAGCATAATCACACGTGTATTGTACCCTAGTGTGTGCCGACTATT
CAGCATTCAGCAGATTTAATCAACCATCCAGCGCTTGAGATTGGCGGCCT
CGTGCGGGGTCTTTAGAATAATGATCCACAATCCGCGCCCTTGATCCATT
CTGTAAGTGTCTCTGTATGGAAGTTAAACGAGATCCCGAACTCGGGCGCC
ATTCCGTCTTCATCAGTGCTTGTGATCAAACCCGGAGGTTTCTCACCGAG
GTTGCCGACGTTTCTCGAGAACGGAGACCTCGCGCGGTCGAACGAAGAAA
CTGTTAATCGATCGACAGATTGATCTCCACGAGACCTTTGCAGCAGCACA
CTGTTGTTCGTTGTTGGCGCCGTAGGTGTCGAGATACTCAATCGCGTTTG
TGGACGAGTAATTCAGCAACTCGAAGATGCTCTGAGCATACGTTCGTTTT
GTGGTACGGTCCGTGTATTGTTTCCACATGAGATGATTCGAGTTTTTGGT
ACATTTGGATTTTTTTCCCCTTCCACCACTCCACCATGACTTCATAATAT
ATTTCTCAAACCGTCTTCAGTGTACACGCTGCCCGGCTGGTGAAGCTGTC
CTCGGCAATTGGCGCATGAAACAATGTCGCTCTGTTGTATGAAATGCAGT
ACAGGTCATCCCCTCGCTCATAAACCTTGTCGATGTCTTGCAACGTGGTT
GTCGTGCATGCATGCTCCCTGTGCATGGGGCCATTGCTGCTGCGTCGCGC
GAGAACAGACGCCCACATCTGGCGCAACAGGTGGTACCGCACGTGGAGAG
GTTCATTGACACCCTCCTAGAGGGCCACTTGGGCCGGTGATGTTTTGGAG
CTAGGAGGGAGGAGGAAGTTCGGGACTGGAGATTGCTGCGGGCGGAGGTT
GTGTGTGTGTGTGTGTGTGTGTCAACAATTGGGTAGATGGGAAATACATT
CAGCAGTATGTATGGCTGACTATAGAGTTCACCGACGTTTTGCTCTCGAG
GATTTTGTCGATTAGCGCTCGATCAAACACACAGAGTAAGTGTCGTCTGT
TTGATGGATTTCTGAGGGAACTTCATGGTGTGCCGTCTGTTGAATATATA
GTTTTTTGACGATACTCTTTCTGGTTTACGATTAGTTGCCCTTGCTTGCC
AACATCAACGCCTGAGTAATCTGCACATTGTCGAAAGGCCAGCAACATGT
ACTGACTGTGTAGCTCAGTTGTGTGCTACTTTCTGTACAATACATGACTA
AAGCCCATATGGGTAGGGTGGCCCGTGTACTCAGCAAATATATATGATGT
ATTTGAAGGGTTTTACTGGGTGCGGGTCTTATTCTTGACCTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig4384:6724..11416+

>mRNA_H-paniculata_contig4384.11114.1 ID=mRNA_H-paniculata_contig4384.11114.1|Name=mRNA_H-paniculata_contig4384.11114.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at H-paniculata_contig4384:6724..11416+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGACTAGCTCCGCCGACGCCTATGAGGCCTACCTCAATGGGCTTCTCGC
CAACAGCAGTGATGTTAATGGCGGATGCGTCGCCGGTTGTATCCTGCTAG
ACACGCAGGGTGCCGCGTTGTACCAGAGGCGCATCGATCGATGTTTGCCA
TGCCGCGATGACGGCGGACTTGTTTCCTTGGTGGAGGGCCAAGCCTTGCA
GACTAGCTCCGCCGACGCCTATGAGGCCTACCTCAATGGGCTTCTCGCCA
ACAGCAGTGATGTTAATGGCGGATGCGTCGCCGGTTGTATCCTGCTAGAC
ACGCAGGGTGCCGCGTTGTACCAGAGGCGCATCGATCGATGTTTGCCATG
CCGCGATGACGGCGGACTTGTTTCCTTGGTGGAGGGCCAAGCCTTGGTAG
CAGCCGTGAAGGGACTTGCTGACGATGGTCTTTGTGCACGAAACCGACTC
TCTTGCACCGGAATTTGGTATCGAGTGTTTGGCGGCACACCCCTGGGGAT
CTACGCTATCGGACCCAAGCGACGGCTAGGTCTCATCGTCCGAGCACTCC
CTCGTGGTGTAGGCTACCTGGTTGTGCTCTACAGGTAGCAGCCGTGAAGG
GACTTGCTGACGATGGTCTTTGTGCACGAAACCGACTCTCTTGCACCGGA
ATTTGGTATCGAGTGTTTGGCGGCACACCCCTGGGGATCTACGCTATCGG
ACCCAAGCGACGGCTAGGTCTCATCGTCCGAGCACTCCCTCGTGGTGTAG
GCTACCTGGTTGTGCTCTACAGACGCCCACATCTGGCGCAACAGGTGGTA
CCGCACGTGGAGAGGTTCATTGACACCCTCCTAGAGGGCCACTTGGGCCG
GTGAACGCCCACATCTGGCGCAACAGGTGGTACCGCACGTGGAGAGGTTC
ATTGACACCCTCCTAGAGGGCCACTTGGGCCGGTGA
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